FFCP PHASE1:Hg19::chr21:39705298..39705316,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-12bp_to_ENST00000414189_5end | |||
|cluster_id=chr21:39705298..39705316,- | |||
|coexpression_cluster_id=C2632 | |||
|description=CAGE_peak_1_at_ENST00000414189_5end | |||
|id=chr21:39705298..39705316,- | |||
|ontology_enrichment_celltype=CL:0000515!5.68e-16!4;CL:0000188!5.95e-15!9;CL:0000035!6.33e-14!20;CL:0000062!1.86e-12!11;CL:0000375!1.86e-12!11;CL:0000335!1.86e-12!11;CL:0000153!2.09e-11!9;CL:0000447!2.09e-11!9;CL:0000594!2.60e-11!3;CL:0000499!1.03e-10!27;CL:0002602!6.33e-09!2;CL:0000055!1.94e-07!180;CL:0000327!3.36e-07!14;CL:0002540!5.37e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000153;7.36e-19;9!CL:0000447;7.36e-19;9!CL:0002540;9.06e-17;6!CL:0000135;2.10e-15;3!CL:0000388;2.10e-15;3!CL:0000214;2.42e-15;3!CL:0000499;3.17e-13;28!CL:0000228;1.19e-11;1!CL:0002372;1.19e-11;1!CL:0000327;2.02e-11;15!CL:0000188;5.20e-11;9!CL:0000062;5.67e-11;9!CL:0002092;2.74e-10;10!CL:0000138;9.99e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,6.71e-19,9;CL:0000447,6.71e-19,9;CL:0002540,9.06e-17,6;CL:0000135,2.10e-15,3;CL:0000388,2.10e-15,3;CL:0000214,2.42e-15,3;CL:0000499,3.03e-13,28;CL:0000228,1.19e-11,1;CL:0002372,1.19e-11,1;CL:0000327,1.91e-11,15;CL:0000188,5.20e-11,9;CL:0002092,2.74e-10,10;CL:0000062,4.94e-09,11;CL:0000375,4.94e-09,11;CL:0000335,4.94e-09,11;CL:0000058,9.33e-08,6;CL:0000138,9.33e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000335;4.48e-09;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004905!1.71e-13!5;UBERON:0000982!1.71e-13!5;UBERON:0004770!1.71e-13!5;UBERON:0009568!6.33e-09!2;UBERON:0002216!6.33e-09!2;UBERON:0002209!6.33e-09!2;UBERON:0002213!6.33e-09!2;UBERON:0004267!6.33e-09!2;UBERON:0006444!6.33e-09!2;UBERON:0001995!6.33e-09!2;UBERON:0004715!6.33e-09!2;UBERON:0001468!6.33e-09!2;UBERON:0001130!6.33e-09!2;UBERON:0001066!6.33e-09!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;2.10e-15;3!UBERON:0000043;2.10e-15;3!UBERON:0007845;2.10e-15;3!UBERON:0006915;2.42e-15;3!UBERON:0007616;2.42e-15;3!UBERON:0002217;2.42e-15;3!UBERON:0002018;2.42e-15;3!UBERON:0002371;2.03e-14;12!UBERON:0004905;1.40e-12;8!UBERON:0000982;1.40e-12;8!UBERON:0004770;1.40e-12;8!UBERON:0007195;1.55e-11;1!UBERON:0002204;5.67e-11;70!UBERON:0004765;4.31e-10;26!UBERON:0001434;9.85e-10;36!UBERON:0001474;1.10e-09;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,2.10e-15,3;UBERON:0000043,2.10e-15,3;UBERON:0007845,2.10e-15,3;UBERON:0006915,2.42e-15,3;UBERON:0007616,2.42e-15,3;UBERON:0002217,2.42e-15,3;UBERON:0002018,2.42e-15,3;UBERON:0004905,1.32e-12,8;UBERON:0000982,1.32e-12,8;UBERON:0004770,1.32e-12,8;UBERON:0007195,1.63e-11,1;UBERON:0002204,2.71e-07,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.37129905888014,0.994192127183747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,1.50401373190767,1.59331170856906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85273810081437,0.289562613335158,0.410952645100767,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,3.92612773501248,0.500170521059677,0,0,0,0,0,3.00946099727719,4.5481500811197,1.03473071292505,0.664225598535437,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532685175939381,0.739144404124282,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57681657680851,0,0,0,0.107420244868274,0.145016693914229,0.0852266274161009,4.71869788927708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.06658324714394,32.9294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3641803165053,31.4459877190719,18.6860356535273,0,0.151230923763239,0.15543720058278,0,0,0,0,0,0,0,0.300515217994437,0,0,0,0,0.464033759878494,0,0,0.343395705182793,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,20.8317210173381,30.5035914896736,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80903090341985,0,0,0,0.12729431655633,9.09527350311987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@ENST00000414189 | |||
}} |
Latest revision as of 17:52, 28 July 2015
Short description: | p1@ENST00000414189 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000414189_5end |
Coexpression cluster: | C2632_Synoviocyte_mesenchymal_tenocyte_thyroid_Nucleus_Skeletal_Myoblast |
Association with transcript: | -12bp_to_ENST00000414189_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 6.71e-19 | 9 |
carbohydrate secreting cell | 6.71e-19 | 9 |
mesenchymal stem cell of the bone marrow | 9.06e-17 | 6 |
fibrocyte | 2.10e-15 | 3 |
tendon cell | 2.10e-15 | 3 |
synovial cell | 2.42e-15 | 3 |
stromal cell | 3.03e-13 | 28 |
multinucleate cell | 1.19e-11 | 1 |
myotube | 1.19e-11 | 1 |
extracellular matrix secreting cell | 1.91e-11 | 15 |
cell of skeletal muscle | 5.20e-11 | 9 |
bone marrow cell | 2.74e-10 | 10 |
osteoblast | 4.94e-09 | 11 |
osteoprogenitor cell | 4.94e-09 | 11 |
mesenchyme condensation cell | 4.94e-09 | 11 |
chondroblast | 9.33e-08 | 6 |
chondrocyte | 9.33e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 2.10e-15 | 3 |
tendon | 2.10e-15 | 3 |
regular connective tissue | 2.10e-15 | 3 |
stratified squamous epithelium | 2.42e-15 | 3 |
layer of synovial tissue | 2.42e-15 | 3 |
synovial joint | 2.42e-15 | 3 |
synovial membrane of synovial joint | 2.42e-15 | 3 |
articulation | 1.32e-12 | 8 |
skeletal joint | 1.32e-12 | 8 |
articular system | 1.32e-12 | 8 |
stroma of bone marrow | 1.63e-11 | 1 |
musculoskeletal system | 2.71e-07 | 167 |