FFCP PHASE1:Hg19::chr2:175411895..175411908,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=26bp_to_ENST00000442996,uc002uiw.2_5end | |association_with_transcript=26bp_to_ENST00000442996,uc002uiw.2_5end | ||
|cluster_id=chr2:175411895..175411908,+ | |||
|coexpression_cluster_id=C4146 | |||
|description=CAGE_peak_2_at_ENST00000442996_5end,CAGE_peak_2_at_uc002uiw.2_5end | |description=CAGE_peak_2_at_ENST00000442996_5end,CAGE_peak_2_at_uc002uiw.2_5end | ||
|id=chr2:175411895..175411908,+ | |id=chr2:175411895..175411908,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002563;3.53e-14;4!CL:0002253;5.95e-13;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.65e-14,4;CL:0002253,4.17e-13,2 | |||
|ontology_enrichment_development_v019=UBERON:0003124;3.82e-07;1 | |||
|ontology_enrichment_disease=DOID:14566!1.31e-26!239;DOID:162!3.17e-25!235;DOID:0050687!1.46e-22!143;DOID:305!3.83e-14!106;DOID:0050686!7.93e-13!137;DOID:8692!5.79e-10!31;DOID:299!1.49e-09!25;DOID:3095!3.06e-08!22;DOID:2994!3.06e-08!22;DOID:1036!1.28e-07!8;DOID:1240!2.68e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:1036;2.33e-17;8!DOID:4468;4.29e-12;2!DOID:3119;2.16e-10;14!DOID:299;2.29e-10;25!DOID:8692;4.52e-08;31!DOID:0050619;1.45e-07;1!DOID:1357;1.45e-07;1!DOID:1799;1.91e-07;1!DOID:10165;1.91e-07;1!DOID:1798;1.91e-07;1!DOID:3371;3.82e-07;1!DOID:4549;3.82e-07;1!DOID:5861;3.82e-07;1!DOID:6496;3.82e-07;1!DOID:5409;5.38e-07;4!DOID:0060085;7.08e-07;1!DOID:3165;7.08e-07;1!DOID:0060121;7.08e-07;1!DOID:2438;7.08e-07;1!DOID:4418;7.08e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.38e-17,235;DOID:1036,3.54e-17,8;DOID:14566,4.26e-17,239;DOID:0050686,1.57e-15,137;DOID:0050687,2.19e-13,143;DOID:4468,2.72e-12,2;DOID:305,1.13e-10,106;DOID:299,1.68e-10,25;DOID:3119,1.94e-10,14;DOID:8692,6.04e-08,31;DOID:0050619,1.46e-07,1;DOID:1357,1.46e-07,1;DOID:1799,1.98e-07,1;DOID:10165,1.98e-07,1;DOID:1798,1.98e-07,1;DOID:3371,3.82e-07,1;DOID:4549,3.82e-07,1;DOID:5861,3.82e-07,1;DOID:6496,3.82e-07,1;DOID:5409,5.96e-07,4;DOID:0060085,7.73e-07,1;DOID:3165,7.73e-07,1;DOID:0060121,7.73e-07,1;DOID:2438,7.73e-07,1;DOID:4418,7.73e-07,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001242;3.53e-14;4!UBERON:0001262;3.53e-14;4!UBERON:0004786;3.53e-14;4!UBERON:0004808;3.53e-14;4!UBERON:0001277;3.53e-14;4!UBERON:0000485;2.68e-08;7!UBERON:0003929;2.68e-08;7!UBERON:0001764;1.45e-07;1!UBERON:0001825;1.45e-07;1!UBERON:0003350;2.60e-07;8!UBERON:0001052;6.89e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,2.65e-14,4;UBERON:0001262,2.65e-14,4;UBERON:0004786,2.65e-14,4;UBERON:0004808,2.65e-14,4;UBERON:0001277,2.65e-14,4;UBERON:0001764,1.46e-07,1;UBERON:0001825,1.46e-07,1;UBERON:0003350,2.27e-07,8;UBERON:0001052,5.79e-07,4 | |||
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| ||
|short_description=p2@ENST00000442996,p2@uc002uiw.2 | |short_description=p2@ENST00000442996,p2@uc002uiw.2 | ||
}} | }} |
Latest revision as of 02:38, 29 July 2015
Short description: | p2@ENST00000442996, p2@uc002uiw.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ENST00000442996_5end, CAGE_peak_2_at_uc002uiw.2_5end |
Coexpression cluster: | C4146_maxillary_small_smallcell_lung_Prostate_gastric_pancreatic |
Association with transcript: | 26bp_to_ENST00000442996, uc002uiw.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.65e-14 | 4 |
epithelial cell of large intestine | 4.17e-13 | 2 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 2.65e-14 | 4 |
wall of intestine | 2.65e-14 | 4 |
gastrointestinal system mucosa | 2.65e-14 | 4 |
gastrointestinal system epithelium | 2.65e-14 | 4 |
intestinal epithelium | 2.65e-14 | 4 |
maxillary sinus | 1.46e-07 | 1 |
paranasal sinus | 1.46e-07 | 1 |
epithelium of mucosa | 2.27e-07 | 8 |
rectum | 5.79e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.38e-17 | 235 |
chronic leukemia | 3.54e-17 | 8 |
disease of cellular proliferation | 4.26e-17 | 239 |
organ system cancer | 1.57e-15 | 137 |
cell type cancer | 2.19e-13 | 143 |
clear cell adenocarcinoma | 2.72e-12 | 2 |
carcinoma | 1.13e-10 | 106 |
adenocarcinoma | 1.68e-10 | 25 |
gastrointestinal system cancer | 1.94e-10 | 14 |
myeloid leukemia | 6.04e-08 | 31 |
paranasal sinus cancer | 1.46e-07 | 1 |
maxillary sinus cancer | 1.46e-07 | 1 |
islet cell tumor | 1.98e-07 | 1 |
endocrine pancreas cancer | 1.98e-07 | 1 |
pancreatic endocrine carcinoma | 1.98e-07 | 1 |
chondrosarcoma | 3.82e-07 | 1 |
extraosseous chondrosarcoma | 3.82e-07 | 1 |
myxoid chondrosarcoma | 3.82e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 3.82e-07 | 1 |
lung small cell carcinoma | 5.96e-07 | 4 |
organ system benign neoplasm | 7.73e-07 | 1 |
skin benign neoplasm | 7.73e-07 | 1 |
integumentary system benign neoplasm | 7.73e-07 | 1 |
dermis tumor | 7.73e-07 | 1 |
cutaneous fibrous histiocytoma | 7.73e-07 | 1 |