FFCP PHASE1:Hg19::chr2:186298833..186298844,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:186298833..186298844,+ | |||
|coexpression_cluster_id=C362 | |||
|description=CAGE_peak_at_chr2:186298833..186298844,+ | |description=CAGE_peak_at_chr2:186298833..186298844,+ | ||
|id=chr2:186298833..186298844,+ | |id=chr2:186298833..186298844,+ | ||
|ontology_enrichment_celltype=CL:0002076!9.17e-17!43;CL:0000223!2.70e-14!59;CL:0002159!6.24e-13!13;CL:0000066!1.26e-12!254;CL:0002368!2.44e-12!13;CL:0000220!5.04e-12!246;CL:0002166!5.16e-12!3;CL:0002621!6.16e-12!3;CL:0002321!7.48e-12!248;CL:0000221!3.63e-09!71;CL:0002327!9.79e-09!4;CL:0002077!1.70e-08!33;CL:0000243!1.87e-08!15;CL:0000125!1.87e-08!15;CL:0000030!1.87e-08!15;CL:0000339!1.87e-08!15;CL:0002549!1.71e-07!2;CL:0000095!1.84e-07!17;CL:0000123!1.84e-07!17;CL:0000362!2.34e-07!8;CL:0000312!5.74e-07!5 | |ontology_enrichment_celltype=CL:0002076!9.17e-17!43;CL:0000223!2.70e-14!59;CL:0002159!6.24e-13!13;CL:0000066!1.26e-12!254;CL:0002368!2.44e-12!13;CL:0000220!5.04e-12!246;CL:0002166!5.16e-12!3;CL:0002621!6.16e-12!3;CL:0002321!7.48e-12!248;CL:0000221!3.63e-09!71;CL:0002327!9.79e-09!4;CL:0002077!1.70e-08!33;CL:0000243!1.87e-08!15;CL:0000125!1.87e-08!15;CL:0000030!1.87e-08!15;CL:0000339!1.87e-08!15;CL:0002549!1.71e-07!2;CL:0000095!1.84e-07!17;CL:0000123!1.84e-07!17;CL:0000362!2.34e-07!8;CL:0000312!5.74e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002159;1.02e-32;14!CL:0002166;4.60e-30;3!CL:0002621;8.25e-30;3!CL:0002327;1.05e-21;4!CL:0000312;2.39e-17;5!CL:0000362;6.14e-17;9!CL:0000240;1.46e-14;6!CL:0000311;1.46e-14;6!CL:0000079;1.46e-14;6!CL:0000237;1.46e-14;6!CL:0002076;5.69e-13;42!CL:0002368;5.38e-12;13!CL:0002077;5.83e-12;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.21e-32,14;CL:0002166,4.60e-30,3;CL:0002621,7.50e-30,3;CL:0002327,1.02e-21,4;CL:0000312,2.91e-17,5;CL:0000362,7.10e-17,9;CL:0000240,1.73e-14,6;CL:0000311,1.73e-14,6;CL:0000079,1.73e-14,6;CL:0000237,1.73e-14,6;CL:0000036,1.73e-14,6;CL:0000357,1.73e-14,6;CL:0000114,1.73e-14,6;CL:0002076,1.09e-13,42;CL:0002077,4.58e-13,34;CL:0000066,3.32e-12,253;CL:0002368,5.23e-12,13;CL:0000223,1.21e-09,58 | |||
|ontology_enrichment_development_v019=CL:0000357;1.46e-14;6!CL:0000114;1.46e-14;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!6.16e-12!3;UBERON:0005284!1.08e-10!5;UBERON:0002200!7.61e-10!11;UBERON:0006876!7.61e-10!11;UBERON:0001708!4.25e-09!4;UBERON:0001704!4.25e-09!4;UBERON:0001911!9.79e-09!4;UBERON:0005333!9.79e-09!4;UBERON:0008425!9.79e-09!4;UBERON:0005311!9.79e-09!4;UBERON:0004121!2.40e-08!169;UBERON:0000924!5.19e-08!173;UBERON:0006601!5.19e-08!173;UBERON:0003947!1.71e-07!2;UBERON:0005629!1.71e-07!2;UBERON:0005358!1.71e-07!2;UBERON:0001886!1.71e-07!2;UBERON:0004086!1.71e-07!2;UBERON:0005282!1.71e-07!2;UBERON:0005281!1.71e-07!2;UBERON:0000076!2.34e-07!8 | |ontology_enrichment_uberon=UBERON:0001949!6.16e-12!3;UBERON:0005284!1.08e-10!5;UBERON:0002200!7.61e-10!11;UBERON:0006876!7.61e-10!11;UBERON:0001708!4.25e-09!4;UBERON:0001704!4.25e-09!4;UBERON:0001911!9.79e-09!4;UBERON:0005333!9.79e-09!4;UBERON:0008425!9.79e-09!4;UBERON:0005311!9.79e-09!4;UBERON:0004121!2.40e-08!169;UBERON:0000924!5.19e-08!173;UBERON:0006601!5.19e-08!173;UBERON:0003947!1.71e-07!2;UBERON:0005629!1.71e-07!2;UBERON:0005358!1.71e-07!2;UBERON:0001886!1.71e-07!2;UBERON:0004086!1.71e-07!2;UBERON:0005282!1.71e-07!2;UBERON:0005281!1.71e-07!2;UBERON:0000076!2.34e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;8.25e-30;3!UBERON:0001708;1.01e-22;4!UBERON:0008895;1.01e-22;4!UBERON:0001911;1.05e-21;4!UBERON:0010371;2.13e-18;31!UBERON:0011159;2.63e-18;5!UBERON:0003929;3.88e-13;7!UBERON:0003350;1.46e-11;8!UBERON:0001828;1.46e-11;8!UBERON:0001003;2.95e-10;15!UBERON:0007376;2.95e-10;15!UBERON:0011137;1.29e-08;11!UBERON:0010323;1.29e-08;11!UBERON:0000486;7.12e-08;12!UBERON:0003729;2.65e-07;13!UBERON:0004807;3.24e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,7.50e-30,3;UBERON:0001708,1.01e-22,4;UBERON:0008895,1.01e-22,4;UBERON:0001911,1.02e-21,4;UBERON:0005333,1.02e-21,4;UBERON:0008425,1.02e-21,4;UBERON:0005311,1.02e-21,4;UBERON:0000076,6.01e-19,8;UBERON:0011159,2.63e-18,5;UBERON:0010188,2.35e-15,6;UBERON:0002539,2.35e-15,6;UBERON:0008816,2.35e-15,6;UBERON:0003350,1.40e-11,8;UBERON:0001828,1.40e-11,8;UBERON:0001003,3.21e-10,15;UBERON:0007376,3.21e-10,15;UBERON:0007383,3.21e-10,15;UBERON:0003102,4.92e-10,99;UBERON:0010371,3.33e-09,104;UBERON:0010323,1.30e-08,11;UBERON:0000033,8.87e-08,56;UBERON:0005085,1.74e-07,31;UBERON:0003729,2.59e-07,13;UBERON:0000153,5.94e-07,62;UBERON:0007811,5.94e-07,62;UBERON:0011137,7.27e-07,14 | |||
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| ||
|short_description=p@chr2:186298833..186298844,+ | |short_description=p@chr2:186298833..186298844,+ | ||
}} | }} |
Latest revision as of 04:06, 29 July 2015
Short description: | p@chr2:186298833..186298844, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:186298833..186298844, + |
Coexpression cluster: | C362_Small_Mallassezderived_Urothelial_Gingival_Prostate_Keratinocyte_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 1.21e-32 | 14 |
epithelial cell of Malassez | 4.60e-30 | 3 |
gingival epithelial cell | 7.50e-30 | 3 |
mammary gland epithelial cell | 1.02e-21 | 4 |
keratinocyte | 2.91e-17 | 5 |
epidermal cell | 7.10e-17 | 9 |
stratified squamous epithelial cell | 1.73e-14 | 6 |
keratin accumulating cell | 1.73e-14 | 6 |
stratified epithelial cell | 1.73e-14 | 6 |
keratinizing barrier epithelial cell | 1.73e-14 | 6 |
epithelial fate stem cell | 1.73e-14 | 6 |
stratified epithelial stem cell | 1.73e-14 | 6 |
surface ectodermal cell | 1.73e-14 | 6 |
endo-epithelial cell | 1.09e-13 | 42 |
ecto-epithelial cell | 4.58e-13 | 34 |
epithelial cell | 3.32e-12 | 253 |
respiratory epithelial cell | 5.23e-12 | 13 |
endodermal cell | 1.21e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 7.50e-30 | 3 |
jaw skeleton | 1.01e-22 | 4 |
splanchnocranium | 1.01e-22 | 4 |
mammary gland | 1.02e-21 | 4 |
mammary bud | 1.02e-21 | 4 |
mammary ridge | 1.02e-21 | 4 |
mammary placode | 1.02e-21 | 4 |
external ectoderm | 6.01e-19 | 8 |
primary subdivision of cranial skeletal system | 2.63e-18 | 5 |
protuberance | 2.35e-15 | 6 |
pharyngeal arch | 2.35e-15 | 6 |
embryonic head | 2.35e-15 | 6 |
epithelium of mucosa | 1.40e-11 | 8 |
gingiva | 1.40e-11 | 8 |
skin epidermis | 3.21e-10 | 15 |
outer epithelium | 3.21e-10 | 15 |
enveloping layer of ectoderm | 3.21e-10 | 15 |
surface structure | 4.92e-10 | 99 |
ecto-epithelium | 3.33e-09 | 104 |
cranial skeletal system | 1.30e-08 | 11 |
head | 8.87e-08 | 56 |
ectodermal placode | 1.74e-07 | 31 |
mouth mucosa | 2.59e-07 | 13 |
anterior region of body | 5.94e-07 | 62 |
craniocervical region | 5.94e-07 | 62 |
axial skeletal system | 7.27e-07 | 14 |