FFCP PHASE1:Hg19::chr3:111480425..111480456,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:111480425..111480456,+ | |||
|description=CAGE_peak_at_chr3:111480425..111480456,+ | |description=CAGE_peak_at_chr3:111480425..111480456,+ | ||
|id=chr3:111480425..111480456,+ | |id=chr3:111480425..111480456,+ | ||
|ontology_enrichment_celltype=CL:0002594;3.45e-27;4!CL:0000359;2.95e-16;32!CL:0000192;8.66e-09;43!CL:0002589;2.66e-07;2!CL:0002593;4.17e-07;2 | |ontology_enrichment_celltype=CL:0000359!1.21e-14!32;CL:0000192!2.31e-14!42;CL:0000514!2.31e-14!42;CL:0000187!1.50e-13!54;CL:0000680!2.33e-12!57;CL:0000056!2.33e-12!57;CL:0000355!2.33e-12!57;CL:0000183!1.23e-11!59;CL:0000393!2.70e-11!60;CL:0000211!2.70e-11!60;CL:0002057!2.12e-09!42;CL:0000860!2.32e-08!45;CL:0000048!4.21e-07!430;CL:0002594!5.19e-07!4;CL:0000723!5.50e-07!436 | ||
| | |ontology_enrichment_celltype_v019=CL:0002594;3.45e-27;4!CL:0000359;2.95e-16;32!CL:0000192;8.66e-09;43!CL:0002589;2.66e-07;2!CL:0002593;4.17e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002594,2.89e-27,4;CL:0000359,1.97e-17,32;CL:0000192,7.96e-13,43;CL:0000514,7.96e-13,43;CL:0000187,6.82e-10,55;CL:0000680,2.39e-09,58;CL:0000056,2.39e-09,58;CL:0000355,2.39e-09,58;CL:0000393,7.41e-09,61;CL:0000211,7.41e-09,61;CL:0002589,2.91e-07,2;CL:0002593,5.60e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000514;8.66e-09;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001310;3.45e-27;4!UBERON:0010260;1.91e-12;9!UBERON:0001637;5.68e-12;42!UBERON:0003509;5.68e-12;42!UBERON:0004572;5.68e-12;42!UBERON:0004573;1.56e-08;33!UBERON:0004571;1.56e-08;33!UBERON:0001529;2.66e-07;2!UBERON:0007204;2.66e-07;2!UBERON:0002456;4.17e-07;2 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.08e-15!167;UBERON:0002385!2.37e-11!63;UBERON:0001015!2.37e-11!63;UBERON:0000383!2.37e-11!63;UBERON:0001637!4.40e-11!42;UBERON:0003509!4.40e-11!42;UBERON:0004572!4.40e-11!42;UBERON:0001134!5.75e-11!61;UBERON:0002036!5.75e-11!61;UBERON:0003082!5.75e-11!61;UBERON:0000914!7.36e-11!83;UBERON:0002329!7.36e-11!83;UBERON:0003077!7.36e-11!83;UBERON:0003059!7.36e-11!83;UBERON:0007282!7.36e-11!83;UBERON:0009618!7.36e-11!83;UBERON:0007285!7.36e-11!83;UBERON:0000926!7.24e-10!448;UBERON:0004120!7.24e-10!448;UBERON:0006603!7.24e-10!448;UBERON:0004573!1.14e-09!33;UBERON:0004571!1.14e-09!33;UBERON:0004290!2.08e-09!70;UBERON:0001981!1.02e-08!60;UBERON:0007500!1.02e-08!60;UBERON:0004537!1.02e-08!60;UBERON:0006965!1.02e-08!60;UBERON:0003081!5.48e-08!216;UBERON:0000486!1.77e-07!82;UBERON:0002049!2.32e-07!79;UBERON:0007798!2.32e-07!79;UBERON:0001310!5.19e-07!4;UBERON:0005256!6.03e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001310;3.45e-27;4!UBERON:0010260;1.91e-12;9!UBERON:0001637;5.68e-12;42!UBERON:0003509;5.68e-12;42!UBERON:0004572;5.68e-12;42!UBERON:0004573;1.56e-08;33!UBERON:0004571;1.56e-08;33!UBERON:0001529;2.66e-07;2!UBERON:0007204;2.66e-07;2!UBERON:0002456;4.17e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001310,2.89e-27,4;UBERON:0001637,3.65e-17,42;UBERON:0003509,3.65e-17,42;UBERON:0004572,3.65e-17,42;UBERON:0010260,1.77e-12,9;UBERON:0007500,5.59e-12,59;UBERON:0001981,5.59e-12,59;UBERON:0004537,5.59e-12,59;UBERON:0006965,5.59e-12,59;UBERON:0000055,2.80e-10,68;UBERON:0002329,9.52e-10,71;UBERON:0003059,9.52e-10,71;UBERON:0007282,9.52e-10,71;UBERON:0004290,9.52e-10,71;UBERON:0009618,9.52e-10,71;UBERON:0003077,1.34e-09,72;UBERON:0007285,1.34e-09,72;UBERON:0003081,1.84e-09,203;UBERON:0007524,1.86e-09,73;UBERON:0004573,6.83e-09,33;UBERON:0004571,6.83e-09,33;UBERON:0002049,7.56e-09,78;UBERON:0007798,7.56e-09,78;UBERON:0007503,8.56e-09,78;UBERON:0001134,1.05e-08,62;UBERON:0002036,1.05e-08,62;UBERON:0003082,1.05e-08,62;UBERON:0002204,1.78e-08,167;UBERON:0002385,2.07e-08,64;UBERON:0001015,2.07e-08,64;UBERON:0000383,2.07e-08,64;UBERON:0004872,2.92e-08,83;UBERON:0000486,3.28e-08,83;UBERON:0001529,2.91e-07,2;UBERON:0007204,2.91e-07,2;UBERON:0002456,5.60e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.783556884599516,0,0,0.218441372130172,0,0,0.331397375727916,0,3.01347264011988,0,1.46379839637152,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0,0,0,0.154816123316076,0,0,1.10926203050036,0,0,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0.464858073811369,0.411167888021826,0.619412741790207,0.28769239232215,0,0.47296445977717,1.72372840368309,1.93645405075148,0,0,0,0.449446968890169,1.83650335422542,0.962787081228281,0.639337125799041,0,0,0,0.580418477257168,0,1.24564449799115,0.75374599577023,0,0.65156653411535,0,0.736555271975129,0.316462387440884,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0.263504357079378,0,0,0,0.97364218096405,0.696518949197069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0.25326102332916,7.28250494472703,0.573673241497627,0,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0.438977620880838,0.30648779579902,0.150238058906597,0,0,0.213557388818567,0.211931901159562,0,0.103052529238439,0,0.18611685633159,0,0,0,0.368199594569197,0.161646056818812,0,0.201504196455281,0.67824236924195,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0.982827216677626,0,0,0,0,0,0,0,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321707842287215,0,0,0.177561725313127,0.0821271560138091,0,0,0,0.200506470303285,0,0.229628896329213,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.580024309752732,0,0.15350367472613,0,0.214840489736547,0,0,0.267096106940212,0,0,0.127612712494584,0,0.464845549297286,0.94443704049192,0,0,0.532306030317022,0.869932992075073,2.03856641014312,0.143124886741991,0,0.632758849437452,0,0,0,0,0.78494864019923,0,0,0.235624804691373,0.202182481573316,0,0,0.48763373908959,0.487426979262569,1.05650146756755,0,0.141405431953713,0,0,0.66343897524122,0.876901770507525,0.578775534266688,0,2.23201414658974,1.54911749049875,0.563391205064483,0.143411352204052,0.0982490410131212,2.49669736036875,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.593929361665277,0.307160702099232,0,0,0.222617410045812,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0.139423744278603,0.153900517007594,0.113942055847001,0,0.0897576444097721,0,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0.783939179315021,0.435296032902013,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0.77380195455795,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0.544017803369474,0,0.612691153526923,0.327872630709804,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,2.51567901752575,0.889811221596536,0,0.453692771289717,0,0.147855149989634,0,0,0.155262956876259,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0.664324201566815,1.14495775979091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0,0.462102664601353,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0.371995018166751,0.462175628631418,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.783556884599516,0,0,0.218441372130172,0,0,0.331397375727916,0,3.01347264011988,0,1.46379839637152,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0,0,0,0.154816123316076,0,0,1.10926203050036,0,0,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0.464858073811369,0.411167888021826,0.619412741790207,0.28769239232215,0,0.47296445977717,1.72372840368309,1.93645405075148,0,0,0,0.449446968890169,1.83650335422542,0.962787081228281,0.639337125799041,0,0,0,0.580418477257168,0,1.24564449799115,0.75374599577023,0,0.65156653411535,0,0.736555271975129,0.316462387440884,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0.263504357079378,0,0,0,0.97364218096405,0.696518949197069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0.25326102332916,7.28250494472703,0.573673241497627,0,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0.438977620880838,0.30648779579902,0.150238058906597,0,0,0.213557388818567,0.211931901159562,0,0.103052529238439,0,0.18611685633159,0,0,0,0.368199594569197,0.161646056818812,0,0.201504196455281,0.67824236924195,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0.982827216677626,0,0,0,0,0,0,0,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321707842287215,0,0,0.177561725313127,0.0821271560138091,0,0,0,0.200506470303285,0,0.229628896329213,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.580024309752732,0,0.15350367472613,0,0.214840489736547,0,0,0.267096106940212,0,0,0.127612712494584,0,0.464845549297286,0.94443704049192,0,0,0.532306030317022,0.869932992075073,2.03856641014312,0.143124886741991,0,0.632758849437452,0,0,0,0,0.78494864019923,0,0,0.235624804691373,0.202182481573316,0,0,0.48763373908959,0.487426979262569,1.05650146756755,0,0.141405431953713,0,0,0.66343897524122,0.876901770507525,0.578775534266688,0,2.23201414658974,1.54911749049875,0.563391205064483,0.143411352204052,0.0982490410131212,2.49669736036875,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.593929361665277,0.307160702099232,0,0,0.222617410045812,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0.139423744278603,0.153900517007594,0.113942055847001,0,0.0897576444097721,0,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0.783939179315021,0.435296032902013,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0.77380195455795,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0.544017803369474,0,0.612691153526923,0.327872630709804,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,2.51567901752575,0.889811221596536,0,0.453692771289717,0,0.147855149989634,0,0,0.155262956876259,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0.664324201566815,1.14495775979091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0,0.462102664601353,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0.371995018166751,0.462175628631418,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:111480425..111480456,+ | |short_description=p@chr3:111480425..111480456,+ | ||
}} | }} |
Latest revision as of 14:11, 29 July 2015
Short description: | p@chr3:111480425..111480456, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:111480425..111480456, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the umbilical artery | 2.89e-27 | 4 |
vascular associated smooth muscle cell | 1.97e-17 | 32 |
smooth muscle cell | 7.96e-13 | 43 |
smooth muscle myoblast | 7.96e-13 | 43 |
muscle cell | 6.82e-10 | 55 |
muscle precursor cell | 2.39e-09 | 58 |
myoblast | 2.39e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.39e-09 | 58 |
electrically responsive cell | 7.41e-09 | 61 |
electrically active cell | 7.41e-09 | 61 |
smooth muscle cell of the brachiocephalic vasculature | 2.91e-07 | 2 |
smooth muscle cell of the internal thoracic artery | 5.60e-07 | 2 |