FFCP PHASE1:Hg19::chr3:157160368..157160384,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:157160368..157160384,+ to FFCP PHASE1:Hg19::chr3:157160368..157160384,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:157160368..157160384,+ | |||
|coexpression_cluster_id=C549 | |||
|description=CAGE_peak_at_chr3:157160368..157160384,+ | |||
|id=chr3:157160368..157160384,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.16e-24!180;CL:0000048!3.29e-23!430;CL:0000723!2.99e-22!436;CL:0000034!5.10e-21!444;CL:0002371!1.80e-16!591;CL:0000144!5.12e-16!625;CL:0000057!1.79e-15!75;CL:0000222!3.15e-15!119;CL:0000680!3.61e-15!57;CL:0000056!3.61e-15!57;CL:0000355!3.61e-15!57;CL:0000187!2.96e-13!54;CL:0000548!4.39e-12!679;CL:0000004!4.39e-12!679;CL:0000255!4.39e-12!679;CL:0000183!4.63e-12!59;CL:0000393!8.54e-12!60;CL:0000211!8.54e-12!60;CL:0000012!8.56e-12!682;CL:0002320!1.90e-09!365;CL:0000192!3.15e-09!42;CL:0000514!3.15e-09!42;CL:0000003!1.08e-08!722;CL:0000134!1.30e-08!358;CL:0000359!4.29e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000135;5.02e-11;3!CL:0000388;5.02e-11;3!CL:0002561;2.25e-08;2!CL:0002494;3.94e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,2.84e-11,3;CL:0000388,2.84e-11,3;CL:0000048,6.13e-10,427;CL:0000723,1.23e-09,433;CL:0000034,3.01e-09,441;CL:0002561,2.14e-08,2;CL:0000057,2.80e-07,76;CL:0002494,3.80e-07,16 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.00e-14!83;UBERON:0002329!1.00e-14!83;UBERON:0003077!1.00e-14!83;UBERON:0003059!1.00e-14!83;UBERON:0007282!1.00e-14!83;UBERON:0009618!1.00e-14!83;UBERON:0007285!1.00e-14!83;UBERON:0001134!3.53e-14!61;UBERON:0002036!3.53e-14!61;UBERON:0003082!3.53e-14!61;UBERON:0004290!3.67e-14!70;UBERON:0004535!5.44e-14!110;UBERON:0001009!7.18e-14!113;UBERON:0002204!9.24e-14!167;UBERON:0000055!2.05e-13!69;UBERON:0002385!2.38e-13!63;UBERON:0001015!2.38e-13!63;UBERON:0000383!2.38e-13!63;UBERON:0002049!3.91e-13!79;UBERON:0007798!3.91e-13!79;UBERON:0004872!4.40e-13!84;UBERON:0000486!3.37e-12!82;UBERON:0001637!1.02e-10!42;UBERON:0003509!1.02e-10!42;UBERON:0004572!1.02e-10!42;UBERON:0001981!4.27e-10!60;UBERON:0007500!4.27e-10!60;UBERON:0004537!4.27e-10!60;UBERON:0006965!4.27e-10!60;UBERON:0002384!8.22e-09!375;UBERON:0000926!1.12e-08!448;UBERON:0004120!1.12e-08!448;UBERON:0006603!1.12e-08!448;UBERON:0004573!2.70e-08!33;UBERON:0004571!2.70e-08!33;UBERON:0005256!1.53e-07!143;UBERON:0000947!3.00e-07!21;UBERON:0010191!3.00e-07!21;UBERON:0000490!3.60e-07!138;UBERON:0003081!4.13e-07!216;UBERON:0003914!4.89e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;5.02e-11;3!UBERON:0000043;5.02e-11;3!UBERON:0007845;5.02e-11;3!UBERON:0005933;2.25e-08;2!UBERON:0005942;2.25e-08;2!UBERON:0005932;2.25e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,2.84e-11,3;UBERON:0000043,2.84e-11,3;UBERON:0007845,2.84e-11,3;UBERON:0005933,2.14e-08,2;UBERON:0005942,2.14e-08,2;UBERON:0005932,2.14e-08,2;UBERON:0000948,1.01e-07,24;UBERON:0005498,1.01e-07,24;UBERON:0004140,1.01e-07,24;UBERON:0009881,1.01e-07,24;UBERON:0004141,1.01e-07,24;UBERON:0003084,1.01e-07,24;UBERON:0007005,1.01e-07,24;UBERON:0004139,1.01e-07,24;UBERON:0004291,1.01e-07,24;UBERON:0004872,1.46e-07,83 | |||
|phase1_expression=0.363356758541113,3.42560838225573,0.986680828671798,2.00146596706261,0.446961094427288,3.48935409640147,0,0,0,0,0,0,0,0.495065411840187,0.662794751455832,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0.822335776043652,0.619412741790207,0.575384784644301,0.256160706529101,0.47296445977717,0.689491361473237,1.29096936716765,0,0.188242339542605,0.272906150057846,0.224723484445085,0.918251677112708,0.320929027076094,0,0,0,0,2.32167390902867,0,1.86846674698672,0.251248665256743,0,0,2.42159801053347,1.10483290796269,3.16462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.12786256184353,0.361439152384566,0,1.01392563272577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13061588384802,0,1.6507082516404,0.626984899610432,0.516833518338658,0.35576626268671,0.33472061276467,0,0,0.976248230192678,0.367663080345869,1.62028389576352,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,2.65924074495618,0.397227542439656,3.72887606973458,0.354668382198357,1.68203280042692,0,1.2333377420858,0.311211035399766,2.15537075311501,0.490385709340376,0.302714855289863,0,0.70296429550139,0.312160076830321,0,0.298897361103602,0.352303495931295,0.971237666208789,0,0,0.859840221182376,0.619954687054593,0,0.494533858557114,0,0.718618141816238,0.168336113954066,0,0.277064115484183,0,1.22595118319608,0,1.36118619792025,0,0.640672166455702,1.05965950579781,0,0.618315175430633,1.28820270022815,1.11670113798954,0,0.292311015483596,0,0.644349290496095,0.646584227275248,0,0,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,7.42988684851167,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651616610620649,0,0,0,0,1.01056513432752,4.1668696131895,2.28304982681518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,3.57656445851882,0.845302752556,0.26593811658487,0,0,0,0.532844358032199,0.142977993658148,0,0,0,0,0.791951872933429,0.602878754119172,0,0.099972991182057,1.2162378064119,0,0,0,0,0,1.15825045334063,1.84928690295345,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0.36807447515742,0,0.542530047399471,0,0.356857977594324,0,0,0.601892199455438,2.27407504055985,1.03473071292505,0.664225598535437,0.184369168541703,1.04260337361699,0,0,0,0,0,0,0,0,1.73675465473144,0,0.561320188866147,2.05022638809122,0,0.804269605718038,0,0.308419387605311,1.24293207719189,0.164254312027618,0.519254429183621,0.348631135379878,0,0,0,0.68888668898764,1.27463817604702,0.262248829918848,0,0,0,0,0,0,0.340187410553031,0.431831832204279,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,3.21367859688319,0.96670718292122,0.616194468458578,1.38153307253517,0,1.18162269355101,0.725083469571143,0.596586391912706,0.0890320356467374,0,0,0,0,0,0.62962469366128,0,2.15623506123262,0.532306030317022,0,0,0.429374660225974,0,0,0.571890581771475,0.255897791311334,1.28381696410176,0.95460974377781,0.78494864019923,0.179872457583315,0.274537029736055,1.06031162111118,0,0,0,0,2.92456187557541,0,0,0.565621727814851,0,0.551365343546124,0,0.876901770507525,0.578775534266688,0,0.608731130888112,0,0.281695602532241,0.286822704408103,0.589494246078727,1.07001315444375,0.354761064070598,4.43326034125095,12.1839110395164,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86623752597084,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,0,0,1.43574604915363,0,0.429226048136571,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,1.41159491818903,0,0,0.447764408660622,0.934853239388898,1.66441758450784,0.568209015825267,2.0125432140206,1.77962244319307,4.80564143633539,7.86400803568843,0.15543720058278,0.73927574994817,0.159296767163702,1.34940933649081,0,0.414706207840855,0.265841714557995,0,0.150257608997218,0,0,0.727394636810238,0.429642228169954,0.928067519756987,0.796191777397232,0,0.686791410365586,0.673498977531838,0,0,0,0.260994291965212,0,0,0.734210113519403,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0.245772908753719,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0.679708458751268,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85997509083376,3.69740502905135,3.46101249699031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.363356758541113,3.42560838225573,0.986680828671798,2.00146596706261,0.446961094427288,3.48935409640147,0,0,0,0,0,0,0,0.495065411840187,0.662794751455832,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0.822335776043652,0.619412741790207,0.575384784644301,0.256160706529101,0.47296445977717,0.689491361473237,1.29096936716765,0,0.188242339542605,0.272906150057846,0.224723484445085,0.918251677112708,0.320929027076094,0,0,0,0,2.32167390902867,0,1.86846674698672,0.251248665256743,0,0,2.42159801053347,1.10483290796269,3.16462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0.12786256184353,0.361439152384566,0,1.01392563272577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13061588384802,0,1.6507082516404,0.626984899610432,0.516833518338658,0.35576626268671,0.33472061276467,0,0,0.976248230192678,0.367663080345869,1.62028389576352,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,2.65924074495618,0.397227542439656,3.72887606973458,0.354668382198357,1.68203280042692,0,1.2333377420858,0.311211035399766,2.15537075311501,0.490385709340376,0.302714855289863,0,0.70296429550139,0.312160076830321,0,0.298897361103602,0.352303495931295,0.971237666208789,0,0,0.859840221182376,0.619954687054593,0,0.494533858557114,0,0.718618141816238,0.168336113954066,0,0.277064115484183,0,1.22595118319608,0,1.36118619792025,0,0.640672166455702,1.05965950579781,0,0.618315175430633,1.28820270022815,1.11670113798954,0,0.292311015483596,0,0.644349290496095,0.646584227275248,0,0,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,7.42988684851167,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651616610620649,0,0,0,0,1.01056513432752,4.1668696131895,2.28304982681518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,3.57656445851882,0.845302752556,0.26593811658487,0,0,0,0.532844358032199,0.142977993658148,0,0,0,0,0.791951872933429,0.602878754119172,0,0.099972991182057,1.2162378064119,0,0,0,0,0,1.15825045334063,1.84928690295345,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0.36807447515742,0,0.542530047399471,0,0.356857977594324,0,0,0.601892199455438,2.27407504055985,1.03473071292505,0.664225598535437,0.184369168541703,1.04260337361699,0,0,0,0,0,0,0,0,1.73675465473144,0,0.561320188866147,2.05022638809122,0,0.804269605718038,0,0.308419387605311,1.24293207719189,0.164254312027618,0.519254429183621,0.348631135379878,0,0,0,0.68888668898764,1.27463817604702,0.262248829918848,0,0,0,0,0,0,0.340187410553031,0.431831832204279,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,3.21367859688319,0.96670718292122,0.616194468458578,1.38153307253517,0,1.18162269355101,0.725083469571143,0.596586391912706,0.0890320356467374,0,0,0,0,0,0.62962469366128,0,2.15623506123262,0.532306030317022,0,0,0.429374660225974,0,0,0.571890581771475,0.255897791311334,1.28381696410176,0.95460974377781,0.78494864019923,0.179872457583315,0.274537029736055,1.06031162111118,0,0,0,0,2.92456187557541,0,0,0.565621727814851,0,0.551365343546124,0,0.876901770507525,0.578775534266688,0,0.608731130888112,0,0.281695602532241,0.286822704408103,0.589494246078727,1.07001315444375,0.354761064070598,4.43326034125095,12.1839110395164,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86623752597084,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,0,0,1.43574604915363,0,0.429226048136571,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,1.41159491818903,0,0,0.447764408660622,0.934853239388898,1.66441758450784,0.568209015825267,2.0125432140206,1.77962244319307,4.80564143633539,7.86400803568843,0.15543720058278,0.73927574994817,0.159296767163702,1.34940933649081,0,0.414706207840855,0.265841714557995,0,0.150257608997218,0,0,0.727394636810238,0.429642228169954,0.928067519756987,0.796191777397232,0,0.686791410365586,0.673498977531838,0,0,0,0.260994291965212,0,0,0.734210113519403,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0.245772908753719,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0.679708458751268,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85997509083376,3.69740502905135,3.46101249699031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:157160368..157160384,+ | |||
}} | }} |
Latest revision as of 17:34, 29 July 2015
Short description: | p@chr3:157160368..157160384, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:157160368..157160384, + |
Coexpression cluster: | C549_mesenchymal_Fibroblast_Synoviocyte_Hair_Smooth_Preadipocyte_Adipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 2.84e-11 | 3 |
tendon cell | 2.84e-11 | 3 |
multi fate stem cell | 6.13e-10 | 427 |
somatic stem cell | 1.23e-09 | 433 |
stem cell | 3.01e-09 | 441 |
outer root sheath cell | 2.14e-08 | 2 |
fibroblast | 2.80e-07 | 76 |
cardiocyte | 3.80e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 2.84e-11 | 3 |
tendon | 2.84e-11 | 3 |
regular connective tissue | 2.84e-11 | 3 |
hair root sheath | 2.14e-08 | 2 |
hair outer root sheath | 2.14e-08 | 2 |
bulb of hair follicle | 2.14e-08 | 2 |
heart | 1.01e-07 | 24 |
primitive heart tube | 1.01e-07 | 24 |
primary heart field | 1.01e-07 | 24 |
anterior lateral plate mesoderm | 1.01e-07 | 24 |
heart tube | 1.01e-07 | 24 |
heart primordium | 1.01e-07 | 24 |
cardiac mesoderm | 1.01e-07 | 24 |
cardiogenic plate | 1.01e-07 | 24 |
heart rudiment | 1.01e-07 | 24 |
splanchnic layer of lateral plate mesoderm | 1.46e-07 | 83 |