FFCP PHASE1:Hg19::chr3:157160431..157160467,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:157160431..157160467,+ | |||
|coexpression_cluster_id=C549 | |||
|description=CAGE_peak_at_chr3:157160431..157160467,+ | |||
|id=chr3:157160431..157160467,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.45e-31!180;CL:0000057!1.40e-27!75;CL:0000048!9.06e-27!430;CL:0000723!1.47e-25!436;CL:0000034!5.27e-24!444;CL:0002371!2.37e-20!591;CL:0000144!6.78e-20!625;CL:0000222!6.66e-17!119;CL:0000548!7.09e-16!679;CL:0000004!7.09e-16!679;CL:0000255!7.09e-16!679;CL:0000012!1.76e-15!682;CL:0000680!3.81e-15!57;CL:0000056!3.81e-15!57;CL:0000355!3.81e-15!57;CL:0000187!1.86e-13!54;CL:0002320!8.98e-13!365;CL:0000183!9.10e-13!59;CL:0000393!1.47e-11!60;CL:0000211!1.47e-11!60;CL:0000134!2.62e-11!358;CL:0000003!1.45e-10!722;CL:0000192!2.76e-09!42;CL:0000514!2.76e-09!42;CL:0000219!4.63e-09!390;CL:0002334!9.14e-09!12;CL:0002494!1.89e-08!16;CL:0002057!1.80e-07!42;CL:0000359!2.47e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.98e-08;12!CL:0000135;2.63e-07;3!CL:0000388;2.63e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.91e-18,427;CL:0000723,7.68e-18,433;CL:0000057,1.31e-17,76;CL:0000034,4.62e-17,441;CL:0002320,6.78e-11,361;CL:0000134,2.14e-10,354;CL:0000219,2.04e-08,386;CL:0002334,5.87e-08,12;CL:0000135,2.63e-07,3;CL:0000388,2.63e-07,3;CL:0000222,8.43e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!4.62e-15!79;UBERON:0007798!4.62e-15!79;UBERON:0004535!5.11e-15!110;UBERON:0002204!2.66e-14!167;UBERON:0001009!4.56e-14!113;UBERON:0000914!5.90e-14!83;UBERON:0002329!5.90e-14!83;UBERON:0003077!5.90e-14!83;UBERON:0003059!5.90e-14!83;UBERON:0007282!5.90e-14!83;UBERON:0009618!5.90e-14!83;UBERON:0007285!5.90e-14!83;UBERON:0004872!7.09e-14!84;UBERON:0000055!8.53e-14!69;UBERON:0001134!3.22e-13!61;UBERON:0002036!3.22e-13!61;UBERON:0003082!3.22e-13!61;UBERON:0002384!6.46e-13!375;UBERON:0004290!1.01e-12!70;UBERON:0002385!2.32e-12!63;UBERON:0001015!2.32e-12!63;UBERON:0000383!2.32e-12!63;UBERON:0001637!2.64e-12!42;UBERON:0003509!2.64e-12!42;UBERON:0004572!2.64e-12!42;UBERON:0000486!4.57e-11!82;UBERON:0001981!4.44e-10!60;UBERON:0007500!4.44e-10!60;UBERON:0004537!4.44e-10!60;UBERON:0006965!4.44e-10!60;UBERON:0000926!1.16e-08!448;UBERON:0004120!1.16e-08!448;UBERON:0006603!1.16e-08!448;UBERON:0003914!2.66e-08!118;UBERON:0004573!3.92e-08!33;UBERON:0004571!3.92e-08!33;UBERON:0000490!4.25e-08!138;UBERON:0005256!4.76e-08!143;UBERON:0003081!2.84e-07!216;UBERON:0000948!5.93e-07!24;UBERON:0005498!5.93e-07!24;UBERON:0004140!5.93e-07!24;UBERON:0009881!5.93e-07!24;UBERON:0004141!5.93e-07!24;UBERON:0003084!5.93e-07!24;UBERON:0007005!5.93e-07!24;UBERON:0004139!5.93e-07!24;UBERON:0004291!5.93e-07!24;UBERON:0001473!6.84e-07!8;UBERON:0004536!6.84e-07!8;UBERON:0006558!6.84e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.25e-07;9!UBERON:0000042;1.25e-07;9!UBERON:0007846;2.63e-07;3!UBERON:0000043;2.63e-07;3!UBERON:0007845;2.63e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,5.97e-11,315;UBERON:0004120,5.97e-11,315;UBERON:0006603,5.97e-11,315;UBERON:0002384,1.05e-10,371;UBERON:0002204,3.76e-09,167;UBERON:0004872,3.67e-08,83;UBERON:0004535,6.61e-08,109;UBERON:0000055,1.11e-07,68;UBERON:0001009,1.72e-07,112;UBERON:0007846,2.63e-07,3;UBERON:0000043,2.63e-07,3;UBERON:0007845,2.63e-07,3 | |||
|phase1_expression=3.63356758541113,10.7050261945492,2.96004248601539,2.00146596706261,0.446961094427288,2.61701557230111,0,1.26343974685366,0,0,0,0,0,0.37129905888014,0.331397375727916,0.672325146451775,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0,0,0,0,0.145398238779565,0.755751887377619,0,0.929716147622738,0.411167888021826,1.23882548358041,0,0.256160706529101,0.709446689665756,1.72372840368309,1.93645405075148,1.35426486594342,0.564727018627814,0.272906150057846,0.449446968890169,0.918251677112708,1.28371610830437,2.55734850319616,0,0,0,4.93355705668593,1.70215567407342,1.86846674698672,0.75374599577023,2.08593167368081,0.434377689410233,3.02699751316684,4.05105399586321,6.32924774881769,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.511450247374121,1.0843174571537,0.50133791063589,0.144846518960824,0,0,0,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,2.26123176769604,1.67799774483962,0.825354125820202,0.835979866147242,0.775250277507987,0.71153252537342,0.33472061276467,0,0,1.22031028774085,1.47065232138347,4.0507097394088,0.17859945656816,0,0.225222960966644,0,0,0,0,0,0,6.46063537203914,2.40597972162702,2.25095607382472,6.59724227722272,0.709336764396714,0.560677600142307,2.1349799145941,0.74000264525148,1.24484414159907,2.96363478553314,1.47115712802113,0,0,3.98346434117454,0,0,0.896692083310806,1.17434498643765,0.485618833104395,0.280901613404497,0.61246251376468,0.61417158655884,0.516628905878827,1.18800285728205,1.7308685049499,2.73048408581408,2.15585442544872,0,0.625592599359821,0.277064115484183,0.877955241761676,2.45190236639216,0.300476117813194,2.04177929688038,0,1.2813443329114,6.14602513362729,0.300091096084402,1.23663035086127,1.54584324027377,0.930584281657949,0,0.389748020644795,0,1.93304787148829,0.80823028409406,1.06502877754984,0.503760491138201,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,7.89425477654364,2.88751792667834,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0.8231480226628,1.47008711385542,0,0,0,0,0,0.171567810298526,0,0,0,0,2.93227474779292,0,0,0,0.234817388471643,1.15493158208859,5.09284063834272,5.13686211033415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0.387815147273333,0,0,0,0,0.771622122786426,0,0,0.142977993658148,0,0.823240336780769,0.65147236858747,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0.239624855491583,0,0,1.73737568001095,2.4657158706046,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,1.10422342547226,0.500170521059677,2.17012018959788,0,0.178428988797162,0.157702415033935,0,0.902838299183157,0,2.0694614258501,0,0,1.82455590382974,0.195801157462741,0,0,0,0,0,0,0,1.73675465473144,0.61384789315225,0.841980283299221,2.69092213436972,0.511707249066704,3.37793234401576,1.48418066444991,1.23367755042124,3.01854933032316,0.164254312027618,1.03850885836724,1.04589340613963,0,0,0,1.14814448164607,2.36718518408732,0.131124414959424,0,0.0770153371044148,0,0,0,0,0.850468526382578,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0.261435451024901,0,0.328014645699706,0.325378394664303,0,0,0,0,0,1.6068392984416,0.96670718292122,1.23238893691716,2.14905144616581,1.10269257987624,1.50388342815583,3.33538396002726,0.93749290157711,0.178064071293475,0,0,0,0,0,2.83331112147576,0,1.84820148105653,0.532306030317022,0,0.18532421910392,1.14499909393593,0,0.632758849437452,0.762520775695299,0.511795582622668,0.42793898803392,0.95460974377781,0.78494864019923,0.179872457583315,2.47083326762449,1.41374882814824,0.404364963146632,0,0.842516912477962,0,5.60541026151954,0,0,1.41405431953713,1.13008116620243,0,0.66343897524122,1.75380354101505,0,1.9676842561399,0.202910376962704,0.30982349809975,1.12678241012897,0.286822704408103,1.17898849215745,0.7133421029625,0.709522128141196,6.75544432952525,13.1717957183961,1.13841952129715,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0,0,0,0,0,1.24415835064723,0.0898683511473268,0,0,0.493217028184668,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32930774541437,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0,0,0,0,0,0,0,0.543616824294456,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0.415440338029185,0,0,0,0,0,0,0,0,0.191915197319445,0.714695326373367,0,0,1.08599920350743,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0.941063278792687,0,0,0.298509605773748,2.80455971816669,2.21922344601045,0.757612021100357,2.76724691927833,1.77962244319307,9.61128287267079,6.80539156934576,0.621748802331122,1.03498604992744,0.477890301491107,4.94783423379965,0,3.7323558705677,6.11435943483388,0.521745061811734,0,1.52322084867518,0,0.727394636810238,0.859284456339908,6.03243887842042,2.3885753321917,0.400027764663154,1.71697852591396,0.336749488765919,0,0,0,0.260994291965212,0,0,0,0,0,0.438568099157414,0.176689145945881,0.38582807654183,0.168942440653073,0,0,0,0,0,0,0,0.982829546539238,0.245772908753719,0,0,0,0,0.567515953566836,0,0,0,0,0,0.157265941855896,0,0,0,0,0,3.81605220784102,0,0,1.76337971845342,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1441462864015,0,0,0,0.20170506870352,0,0,0.327543835020193,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0.170426809518315,0,0.4582137370881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86919826156599,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,4.09194519983426,12.0165663444169,9.95041092884715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215166616178029,0,0,0.213454691755431,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:157160431..157160467,+ | |||
}} |
Latest revision as of 17:34, 29 July 2015
Short description: | p@chr3:157160431..157160467, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:157160431..157160467, + |
Coexpression cluster: | C549_mesenchymal_Fibroblast_Synoviocyte_Hair_Smooth_Preadipocyte_Adipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.91e-18 | 427 |
somatic stem cell | 7.68e-18 | 433 |
fibroblast | 1.31e-17 | 76 |
stem cell | 4.62e-17 | 441 |
connective tissue cell | 6.78e-11 | 361 |
mesenchymal cell | 2.14e-10 | 354 |
motile cell | 2.04e-08 | 386 |
preadipocyte | 5.87e-08 | 12 |
fibrocyte | 2.63e-07 | 3 |
tendon cell | 2.63e-07 | 3 |
mesodermal cell | 8.43e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 5.97e-11 | 315 |
mesoderm-derived structure | 5.97e-11 | 315 |
presumptive mesoderm | 5.97e-11 | 315 |
connective tissue | 1.05e-10 | 371 |
musculoskeletal system | 3.76e-09 | 167 |
splanchnic layer of lateral plate mesoderm | 3.67e-08 | 83 |
cardiovascular system | 6.61e-08 | 109 |
vessel | 1.11e-07 | 68 |
circulatory system | 1.72e-07 | 112 |
dense regular connective tissue | 2.63e-07 | 3 |
tendon | 2.63e-07 | 3 |
regular connective tissue | 2.63e-07 | 3 |