FFCP PHASE1:Hg19::chr3:98518647..98518667,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:98518647..98518667,- | |||
|coexpression_cluster_id=C504 | |coexpression_cluster_id=C504 | ||
|description=CAGE_peak_at_chr3:98518647..98518667,- | |description=CAGE_peak_at_chr3:98518647..98518667,- | ||
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|ontology_enrichment_celltype=CL:0000055!7.65e-16!180;CL:0002321!8.47e-16!248;CL:0000220!1.77e-15!246;CL:0000548!2.94e-12!679;CL:0000004!2.94e-12!679;CL:0000255!2.94e-12!679;CL:0000680!5.10e-12!57;CL:0000056!5.10e-12!57;CL:0000355!5.10e-12!57;CL:0000012!7.62e-12!682;CL:0000187!2.41e-10!54;CL:0000144!2.48e-10!625;CL:0000393!6.46e-10!60;CL:0000211!6.46e-10!60;CL:0000192!2.22e-09!42;CL:0000514!2.22e-09!42;CL:0002371!3.44e-09!591;CL:0000183!3.77e-09!59;CL:0000359!1.60e-08!32;CL:0000003!4.17e-08!722;CL:0000221!6.73e-07!71 | |ontology_enrichment_celltype=CL:0000055!7.65e-16!180;CL:0002321!8.47e-16!248;CL:0000220!1.77e-15!246;CL:0000548!2.94e-12!679;CL:0000004!2.94e-12!679;CL:0000255!2.94e-12!679;CL:0000680!5.10e-12!57;CL:0000056!5.10e-12!57;CL:0000355!5.10e-12!57;CL:0000012!7.62e-12!682;CL:0000187!2.41e-10!54;CL:0000144!2.48e-10!625;CL:0000393!6.46e-10!60;CL:0000211!6.46e-10!60;CL:0000192!2.22e-09!42;CL:0000514!2.22e-09!42;CL:0002371!3.44e-09!591;CL:0000183!3.77e-09!59;CL:0000359!1.60e-08!32;CL:0000003!4.17e-08!722;CL:0000221!6.73e-07!71 | ||
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|ontology_enrichment_celltype_v019_2=CL:0000569,3.40e-10,4;CL:0000011,3.40e-10,4;CL:0002539,2.75e-09,10;CL:0000064,3.33e-09,3;CL:0000067,3.33e-09,3;CL:0005012,3.33e-09,3;CL:0002304,3.33e-09,3 | |||
|ontology_enrichment_development_v019=CL:0000011;2.12e-10;4 | |ontology_enrichment_development_v019=CL:0000011;2.12e-10;4 | ||
|ontology_enrichment_disease=DOID:2394!4.84e-12!14;DOID:120!1.13e-09!27;DOID:193!1.86e-08!29 | |ontology_enrichment_disease=DOID:2394!4.84e-12!14;DOID:120!1.13e-09!27;DOID:193!1.86e-08!29 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.07e-29;14!DOID:120;2.68e-16;27!DOID:193;6.24e-15;29!DOID:0060084;6.66e-10;3!DOID:127;6.66e-10;3!DOID:0060072;1.71e-07;4 | |ontology_enrichment_disease_v019=DOID:2394;1.07e-29;14!DOID:120;2.68e-16;27!DOID:193;6.24e-15;29!DOID:0060084;6.66e-10;3!DOID:127;6.66e-10;3!DOID:0060072;1.71e-07;4 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,3.83e-30,14;DOID:120,1.50e-16,27;DOID:193,3.66e-15,29;DOID:0060084,6.97e-10,3;DOID:127,6.97e-10,3;DOID:0060072,1.77e-07,4 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000992;4.81e-15;13!UBERON:0002118;2.38e-13;5!UBERON:0007625;1.92e-11;11!UBERON:0000488;3.53e-11;4!UBERON:0002119;6.47e-11;4!UBERON:0004237;2.59e-09;10!UBERON:0004695;2.59e-09;10!UBERON:0002111;2.59e-09;10!UBERON:0004178;2.59e-09;10!UBERON:0001778;5.28e-09;3!UBERON:0001775;5.28e-09;3!UBERON:0000991;1.24e-08;21!UBERON:0004573;1.45e-08;33!UBERON:0004571;1.45e-08;33!UBERON:0003134;3.96e-08;33!UBERON:0001135;6.74e-08;15!UBERON:0002203;1.93e-07;6!UBERON:0001768;1.93e-07;6!UBERON:0002200;1.93e-07;6!UBERON:0000947;7.27e-07;21!UBERON:0010191;7.27e-07;21 | |ontology_enrichment_uberon_v019=UBERON:0000992;4.81e-15;13!UBERON:0002118;2.38e-13;5!UBERON:0007625;1.92e-11;11!UBERON:0000488;3.53e-11;4!UBERON:0002119;6.47e-11;4!UBERON:0004237;2.59e-09;10!UBERON:0004695;2.59e-09;10!UBERON:0002111;2.59e-09;10!UBERON:0004178;2.59e-09;10!UBERON:0001778;5.28e-09;3!UBERON:0001775;5.28e-09;3!UBERON:0000991;1.24e-08;21!UBERON:0004573;1.45e-08;33!UBERON:0004571;1.45e-08;33!UBERON:0003134;3.96e-08;33!UBERON:0001135;6.74e-08;15!UBERON:0002203;1.93e-07;6!UBERON:0001768;1.93e-07;6!UBERON:0002200;1.93e-07;6!UBERON:0000947;7.27e-07;21!UBERON:0010191;7.27e-07;21 | ||
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| ||
|short_description=p@chr3:98518647..98518667,- | |short_description=p@chr3:98518647..98518667,- | ||
}} | }} |
Latest revision as of 00:07, 30 July 2015
Short description: | p@chr3:98518647..98518667, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:98518647..98518667, - |
Coexpression cluster: | C504_leiomyoma_Lens_Ciliary_mesenchymal_Smooth_Mesothelial_Renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac mesenchymal cell | 3.40e-10 | 4 |
migratory trunk neural crest cell | 3.40e-10 | 4 |
aortic smooth muscle cell | 2.75e-09 | 10 |
ciliated cell | 3.33e-09 | 3 |
ciliated epithelial cell | 3.33e-09 | 3 |
multi-ciliated epithelial cell | 3.33e-09 | 3 |
non-pigmented ciliary epithelial cell | 3.33e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
female gonad | 1.28e-15 | 13 |
right ovary | 1.24e-13 | 5 |
pigment epithelium of eye | 1.17e-11 | 11 |
left ovary | 1.70e-11 | 4 |
atypical epithelium | 2.83e-11 | 4 |
blood vessel smooth muscle | 2.75e-09 | 10 |
arterial system smooth muscle | 2.75e-09 | 10 |
artery smooth muscle tissue | 2.75e-09 | 10 |
aorta smooth muscle tissue | 2.75e-09 | 10 |
ciliary epithelium | 3.33e-09 | 3 |
ciliary body | 3.33e-09 | 3 |
gonad | 5.79e-09 | 21 |
indifferent external genitalia | 5.79e-09 | 21 |
indifferent gonad | 5.79e-09 | 21 |
gonad primordium | 5.79e-09 | 21 |
systemic artery | 6.30e-09 | 33 |
systemic arterial system | 6.30e-09 | 33 |
external genitalia | 1.78e-08 | 22 |
female organism | 1.96e-08 | 41 |
female reproductive organ | 2.94e-08 | 37 |
female reproductive system | 2.94e-08 | 37 |
smooth muscle tissue | 6.27e-08 | 15 |
artery | 1.30e-07 | 42 |
arterial blood vessel | 1.30e-07 | 42 |
arterial system | 1.30e-07 | 42 |
vasculature of eye | 1.68e-07 | 6 |
uvea | 1.68e-07 | 6 |
vasculature of head | 1.68e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.83e-30 | 14 |
female reproductive organ cancer | 1.50e-16 | 27 |
reproductive organ cancer | 3.66e-15 | 29 |
cell type benign neoplasm | 6.97e-10 | 3 |
leiomyoma | 6.97e-10 | 3 |
benign neoplasm | 1.77e-07 | 4 |