FFCP PHASE1:Hg19::chr4:127876558..127876592,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000515428_5end | |association_with_transcript=0bp_to_ENST00000515428_5end | ||
|cluster_id=chr4:127876558..127876592,- | |||
|coexpression_cluster_id=C2775 | |||
|description=CAGE_peak_1_at_ENST00000515428_5end | |description=CAGE_peak_1_at_ENST00000515428_5end | ||
|id=chr4:127876558..127876592,- | |id=chr4:127876558..127876592,- | ||
|ontology_enrichment_celltype=CL:0002620!2.62e-18!23;CL:0000346!1.35e-07!3;CL:1000428!1.35e-07!3 | |ontology_enrichment_celltype=CL:0002620!2.62e-18!23;CL:0000346!1.35e-07!3;CL:1000428!1.35e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.03e-34;23!CL:0000346;2.83e-18;3!CL:1000428;2.83e-18;3!CL:0002559;3.50e-11;5!CL:0002551;1.02e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,8.83e-35,23;CL:0000346,2.83e-18,3;CL:1000428,2.83e-18,3;CL:0002559,3.50e-11,5;CL:0002551,9.35e-10,6;CL:0000057,6.50e-09,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!2.46e-11!5;DOID:450!2.46e-11!5;DOID:66!2.46e-11!5;DOID:423!2.46e-11!5;DOID:0080000!2.46e-11!5;DOID:11722!2.46e-11!5;DOID:1036!2.95e-07!8 | |ontology_enrichment_disease=DOID:17!2.46e-11!5;DOID:450!2.46e-11!5;DOID:66!2.46e-11!5;DOID:423!2.46e-11!5;DOID:0080000!2.46e-11!5;DOID:11722!2.46e-11!5;DOID:1036!2.95e-07!8 | ||
|ontology_enrichment_disease_v019=DOID:17;2.88e-19;5!DOID:450;2.88e-19;5!DOID:66;2.88e-19;5!DOID:423;2.88e-19;5!DOID:0080000;2.88e-19;5!DOID:11722;2.88e-19;5!DOID:1036;5.18e-19;8!DOID:0060085;2.51e-07;1!DOID:3165;2.51e-07;1!DOID:0060121;2.51e-07;1!DOID:2438;2.51e-07;1!DOID:4418;2.51e-07;1!DOID:5662;5.18e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.02e-19,5;DOID:450,3.02e-19,5;DOID:66,3.02e-19,5;DOID:423,3.02e-19,5;DOID:0080000,3.02e-19,5;DOID:11722,3.02e-19,5;DOID:1036,5.38e-19,8;DOID:0060085,2.67e-07,1;DOID:3165,2.67e-07,1;DOID:0060121,2.67e-07,1;DOID:2438,2.67e-07,1;DOID:4418,2.67e-07,1;DOID:5662,7.40e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002616!3.40e-17!59;UBERON:0002097!4.20e-17!40;UBERON:0001893!2.74e-16!34;UBERON:0000955!7.53e-16!69;UBERON:0006238!7.53e-16!69;UBERON:0001869!1.05e-15!32;UBERON:0002791!4.90e-15!33;UBERON:0001049!5.28e-15!57;UBERON:0005068!5.28e-15!57;UBERON:0006241!5.28e-15!57;UBERON:0007135!5.28e-15!57;UBERON:0002199!1.54e-14!45;UBERON:0002416!1.54e-14!45;UBERON:0002020!2.15e-14!34;UBERON:0003528!2.15e-14!34;UBERON:0001017!2.56e-14!82;UBERON:0005743!2.77e-13!86;UBERON:0002780!1.08e-12!41;UBERON:0001890!1.08e-12!41;UBERON:0006240!1.08e-12!41;UBERON:0000956!1.32e-12!25;UBERON:0000203!1.32e-12!25;UBERON:0000073!2.16e-12!94;UBERON:0001016!2.16e-12!94;UBERON:0003080!2.81e-12!42;UBERON:0001950!3.85e-10!20;UBERON:0002619!5.00e-09!22;UBERON:0002067!7.53e-09!9;UBERON:0004016!7.53e-09!9;UBERON:0010083!7.53e-09!9;UBERON:0007023!3.97e-08!115;UBERON:0002346!4.25e-08!90;UBERON:0003075!8.08e-08!86;UBERON:0007284!8.08e-08!86;UBERON:0000033!1.23e-07!123;UBERON:0000412!1.35e-07!3;UBERON:0001992!1.35e-07!3;UBERON:0000200!2.09e-07!6;UBERON:0003056!4.92e-07!61;UBERON:0000924!5.10e-07!173;UBERON:0006601!5.10e-07!173;UBERON:0000153!6.02e-07!129;UBERON:0007811!6.02e-07!129;UBERON:0004121!9.63e-07!169 | |ontology_enrichment_uberon=UBERON:0002616!3.40e-17!59;UBERON:0002097!4.20e-17!40;UBERON:0001893!2.74e-16!34;UBERON:0000955!7.53e-16!69;UBERON:0006238!7.53e-16!69;UBERON:0001869!1.05e-15!32;UBERON:0002791!4.90e-15!33;UBERON:0001049!5.28e-15!57;UBERON:0005068!5.28e-15!57;UBERON:0006241!5.28e-15!57;UBERON:0007135!5.28e-15!57;UBERON:0002199!1.54e-14!45;UBERON:0002416!1.54e-14!45;UBERON:0002020!2.15e-14!34;UBERON:0003528!2.15e-14!34;UBERON:0001017!2.56e-14!82;UBERON:0005743!2.77e-13!86;UBERON:0002780!1.08e-12!41;UBERON:0001890!1.08e-12!41;UBERON:0006240!1.08e-12!41;UBERON:0000956!1.32e-12!25;UBERON:0000203!1.32e-12!25;UBERON:0000073!2.16e-12!94;UBERON:0001016!2.16e-12!94;UBERON:0003080!2.81e-12!42;UBERON:0001950!3.85e-10!20;UBERON:0002619!5.00e-09!22;UBERON:0002067!7.53e-09!9;UBERON:0004016!7.53e-09!9;UBERON:0010083!7.53e-09!9;UBERON:0007023!3.97e-08!115;UBERON:0002346!4.25e-08!90;UBERON:0003075!8.08e-08!86;UBERON:0007284!8.08e-08!86;UBERON:0000033!1.23e-07!123;UBERON:0000412!1.35e-07!3;UBERON:0001992!1.35e-07!3;UBERON:0000200!2.09e-07!6;UBERON:0003056!4.92e-07!61;UBERON:0000924!5.10e-07!173;UBERON:0006601!5.10e-07!173;UBERON:0000153!6.02e-07!129;UBERON:0007811!6.02e-07!129;UBERON:0004121!9.63e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.12e-29;41!UBERON:0002067;1.89e-23;9!UBERON:0003102;2.56e-21;50!UBERON:0002199;1.29e-20;46!UBERON:0002416;1.29e-20;46!UBERON:0000412;2.83e-18;3!UBERON:0001992;2.83e-18;3!UBERON:0002073;3.50e-11;5!UBERON:0007029;2.51e-07;1!UBERON:0000014;6.59e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,4.28e-38,41;UBERON:0002199,1.45e-33,46;UBERON:0002416,1.45e-33,46;UBERON:0002067,1.68e-23,9;UBERON:0004016,1.68e-23,9;UBERON:0010083,1.68e-23,9;UBERON:0000412,2.83e-18,3;UBERON:0001992,2.83e-18,3;UBERON:0003102,1.10e-13,99;UBERON:0002073,3.50e-11,5;UBERON:0005086,3.50e-11,5;UBERON:0007029,2.52e-07,1;UBERON:0000014,6.79e-07,4 | |||
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| ||
|short_description=p1@ENST00000515428 | |short_description=p1@ENST00000515428 | ||
}} | }} |
Latest revision as of 01:29, 30 July 2015
Short description: | p1@ENST00000515428 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000515428_5end |
Coexpression cluster: | C2775_gastric_chronic_neuroepithelioma_neuroectodermal_gall_Fibroblast_adenocarcinoma |
Association with transcript: | 0bp_to_ENST00000515428_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 8.83e-35 | 23 |
hair follicle dermal papilla cell | 2.83e-18 | 3 |
stem cell of epidermis | 2.83e-18 | 3 |
hair follicle cell | 3.50e-11 | 5 |
fibroblast of dermis | 9.35e-10 | 6 |
fibroblast | 6.50e-09 | 76 |
Ontology term | p-value | n |
---|---|---|
skin of body | 4.28e-38 | 41 |
integument | 1.45e-33 | 46 |
integumental system | 1.45e-33 | 46 |
dermis | 1.68e-23 | 9 |
dermatome | 1.68e-23 | 9 |
future dermis | 1.68e-23 | 9 |
dermal papilla | 2.83e-18 | 3 |
papillary layer of dermis | 2.83e-18 | 3 |
surface structure | 1.10e-13 | 99 |
hair follicle | 3.50e-11 | 5 |
hair follicle placode | 3.50e-11 | 5 |
surface | 2.52e-07 | 1 |
zone of skin | 6.79e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.02e-19 | 5 |
myotonic disease | 3.02e-19 | 5 |
muscle tissue disease | 3.02e-19 | 5 |
myopathy | 3.02e-19 | 5 |
muscular disease | 3.02e-19 | 5 |
myotonic dystrophy | 3.02e-19 | 5 |
chronic leukemia | 5.38e-19 | 8 |
organ system benign neoplasm | 2.67e-07 | 1 |
skin benign neoplasm | 2.67e-07 | 1 |
integumentary system benign neoplasm | 2.67e-07 | 1 |
dermis tumor | 2.67e-07 | 1 |
cutaneous fibrous histiocytoma | 2.67e-07 | 1 |
pleomorphic carcinoma | 7.40e-07 | 1 |