FFCP PHASE1:Hg19::chr5:82197742..82197746,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:82197742..82197746,- | |||
|coexpression_cluster_id=C464 | |||
|description=CAGE_peak_at_chr5:82197742..82197746,- | |description=CAGE_peak_at_chr5:82197742..82197746,- | ||
|id=chr5:82197742..82197746,- | |id=chr5:82197742..82197746,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000062;1.05e-15;9!CL:0000322;3.06e-12;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000062,4.80e-13,11;CL:0000375,4.80e-13,11;CL:0000335,4.80e-13,11;CL:0000322,2.89e-12,3 | |||
|ontology_enrichment_development_v019=CL:0000335;4.80e-13;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4468;5.48e-18;2!DOID:3910;1.17e-17;2!DOID:3908;7.25e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,5.48e-18,2;DOID:3910,1.07e-17,2;DOID:3908,7.01e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0002791!3.39e-10!33;UBERON:0002420!7.37e-10!9;UBERON:0007245!7.37e-10!9;UBERON:0010009!7.37e-10!9;UBERON:0010011!7.37e-10!9;UBERON:0000454!7.37e-10!9;UBERON:0002020!7.73e-10!34;UBERON:0003528!7.73e-10!34;UBERON:0001893!7.73e-10!34;UBERON:0000955!9.33e-10!69;UBERON:0006238!9.33e-10!69;UBERON:0002780!2.65e-09!41;UBERON:0001890!2.65e-09!41;UBERON:0006240!2.65e-09!41;UBERON:0003080!5.00e-09!42;UBERON:0001869!1.17e-08!32;UBERON:0001049!1.82e-08!57;UBERON:0005068!1.82e-08!57;UBERON:0006241!1.82e-08!57;UBERON:0007135!1.82e-08!57;UBERON:0009663!2.05e-08!7;UBERON:0002616!4.40e-08!59;UBERON:0001017!1.18e-07!82;UBERON:0001950!3.61e-07!20;UBERON:0005743!3.88e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.17e-17;2!UBERON:0002173;1.17e-17;2!UBERON:0002186;1.17e-17;2!UBERON:0004821;3.06e-12;3!UBERON:0007499;3.06e-12;3!UBERON:0003215;3.06e-12;3!UBERON:0010368;3.06e-12;3!UBERON:0009911;3.06e-12;3!UBERON:0002299;3.06e-12;3!UBERON:0006524;3.06e-12;3!UBERON:0008874;3.06e-12;3!UBERON:0002169;3.06e-12;3!UBERON:0004894;3.06e-12;3!UBERON:0009856;1.63e-09;4!UBERON:0001474;2.33e-08;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.07e-17,2;UBERON:0002173,1.07e-17,2;UBERON:0002186,1.07e-17,2;UBERON:0004821,2.89e-12,3;UBERON:0003215,2.89e-12,3;UBERON:0010368,2.89e-12,3;UBERON:0009911,2.89e-12,3;UBERON:0002299,2.89e-12,3;UBERON:0006524,2.89e-12,3;UBERON:0008874,2.89e-12,3;UBERON:0002169,2.89e-12,3;UBERON:0004894,2.89e-12,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.75434805755208,5.11558899507645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0.111308705022906,0,0,0,0,0,0.102268682502155,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,1.5255219017566,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0,0.533034776018635,0,0,0,0,0,0,0,0,15.824854839602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0.160317640503067,0,0.19980960958213,0,0,0,1.00838358591705,0.248505071130865,0,0,0,0,0,0,0.273810757783986,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0.2249738915515,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0.250381861413,0,0.221858103073705,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516644938982447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0.205116364240755,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0.206686796501184,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0,0,0.222462803784138,0,0.314231179832004,0,0,0,0,0,0.158013611732727,0,0.173858272302579,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0.243835849964539,0.647428837187895,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,4.2347384605883,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.75434805755208,5.11558899507645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0.111308705022906,0,0,0,0,0,0.102268682502155,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,1.5255219017566,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0,0.533034776018635,0,0,0,0,0,0,0,0,15.824854839602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0.160317640503067,0,0.19980960958213,0,0,0,1.00838358591705,0.248505071130865,0,0,0,0,0,0,0.273810757783986,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0.2249738915515,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0.250381861413,0,0.221858103073705,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516644938982447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0.205116364240755,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0.206686796501184,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,0,0,0.222462803784138,0,0.314231179832004,0,0,0,0,0,0.158013611732727,0,0.173858272302579,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0.243835849964539,0.647428837187895,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,4.2347384605883,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:82197742..82197746,- | |short_description=p@chr5:82197742..82197746,- | ||
}} | }} |
Latest revision as of 16:53, 30 July 2015
Short description: | p@chr5:82197742..82197746, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:82197742..82197746, - |
Coexpression cluster: | C464_clear_serous_pagetoid_squamous_chorionic_thyroid_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
osteoblast | 4.80e-13 | 11 |
osteoprogenitor cell | 4.80e-13 | 11 |
mesenchyme condensation cell | 4.80e-13 | 11 |
pneumocyte | 2.89e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.07e-17 | 2 |
alveolar duct | 1.07e-17 | 2 |
bronchiole | 1.07e-17 | 2 |
pulmonary alveolus epithelium | 2.89e-12 | 3 |
alveolus | 2.89e-12 | 3 |
pulmonary lobule | 2.89e-12 | 3 |
lobule | 2.89e-12 | 3 |
alveolus of lung | 2.89e-12 | 3 |
alveolar system | 2.89e-12 | 3 |
pulmonary acinus | 2.89e-12 | 3 |
alveolar sac | 2.89e-12 | 3 |
alveolar wall | 2.89e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 5.48e-18 | 2 |
lung adenocarcinoma | 1.07e-17 | 2 |
non-small cell lung carcinoma | 7.01e-08 | 5 |