FFCP PHASE1:Hg19::chr7:128410308..128410334,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:128410308..128410334,+ to FFCP PHASE1:Hg19::chr7:128410308..128410334,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr7:128410308..128410334,+ | |||
|coexpression_cluster_id=C582 | |||
|description=CAGE_peak_at_chr7:128410308..128410334,+ | |||
|id=chr7:128410308..128410334,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.57e-27!180;CL:0000057!3.83e-15!75;CL:0000680!2.03e-09!57;CL:0000056!2.03e-09!57;CL:0000355!2.03e-09!57;CL:0000393!1.77e-08!60;CL:0000211!1.77e-08!60;CL:0000187!2.23e-08!54;CL:0000220!3.91e-08!246;CL:0000548!4.03e-08!679;CL:0000004!4.03e-08!679;CL:0000255!4.03e-08!679;CL:0000012!5.68e-08!682;CL:0002321!6.91e-08!248;CL:0002620!8.05e-08!23;CL:0002334!2.50e-07!12;CL:0000192!4.05e-07!42;CL:0000514!4.05e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.57e-08;23!CL:0002334;5.29e-08;12!CL:0000134;1.57e-07;55!CL:0000057;8.20e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.35e-18,76;CL:0000680,1.57e-10,58;CL:0000056,1.57e-10,58;CL:0000355,1.57e-10,58;CL:0000187,2.33e-09,55;CL:0000393,3.86e-09,61;CL:0000211,3.86e-09,61;CL:0002620,2.10e-08,23;CL:0002334,4.62e-08,12;CL:0000192,1.03e-07,43;CL:0000514,1.03e-07,43;CL:0000222,6.83e-07,121;CL:0002321,6.93e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!4.29e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;7.54e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.36e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.28e-10!83;UBERON:0002329!7.28e-10!83;UBERON:0003077!7.28e-10!83;UBERON:0003059!7.28e-10!83;UBERON:0007282!7.28e-10!83;UBERON:0009618!7.28e-10!83;UBERON:0007285!7.28e-10!83;UBERON:0001134!4.06e-09!61;UBERON:0002036!4.06e-09!61;UBERON:0003082!4.06e-09!61;UBERON:0002385!6.32e-09!63;UBERON:0001015!6.32e-09!63;UBERON:0000383!6.32e-09!63;UBERON:0000486!7.95e-09!82;UBERON:0004290!1.09e-08!70;UBERON:0003102!1.35e-08!95;UBERON:0005256!1.82e-08!143;UBERON:0002100!3.11e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;5.28e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,3.44e-10,62;UBERON:0002036,3.44e-10,62;UBERON:0003082,3.44e-10,62;UBERON:0007524,4.99e-10,73;UBERON:0002329,5.57e-10,71;UBERON:0003059,5.57e-10,71;UBERON:0007282,5.57e-10,71;UBERON:0004290,5.57e-10,71;UBERON:0009618,5.57e-10,71;UBERON:0002385,6.31e-10,64;UBERON:0001015,6.31e-10,64;UBERON:0000383,6.31e-10,64;UBERON:0000486,9.69e-10,83;UBERON:0003077,1.44e-09,72;UBERON:0007285,1.44e-09,72;UBERON:0005256,3.36e-09,122;UBERON:0007503,1.58e-08,78;UBERON:0003102,1.63e-08,99;UBERON:0002199,4.81e-08,46;UBERON:0002416,4.81e-08,46;UBERON:0003104,1.07e-07,160;UBERON:0009142,1.07e-07,160;UBERON:0000490,6.33e-07,148 | |||
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| ||
|short_description=p@chr7:128410308..128410334,+ | |||
}} | }} |
Latest revision as of 05:48, 31 July 2015
Short description: | p@chr7:128410308..128410334, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:128410308..128410334, + |
Coexpression cluster: | C582_Smooth_tenocyte_mesenchymal_leiomyoma_Fibroblast_Olfactory_Aortic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.35e-18 | 76 |
muscle precursor cell | 1.57e-10 | 58 |
myoblast | 1.57e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.57e-10 | 58 |
muscle cell | 2.33e-09 | 55 |
electrically responsive cell | 3.86e-09 | 61 |
electrically active cell | 3.86e-09 | 61 |
skin fibroblast | 2.10e-08 | 23 |
preadipocyte | 4.62e-08 | 12 |
smooth muscle cell | 1.03e-07 | 43 |
smooth muscle myoblast | 1.03e-07 | 43 |
mesodermal cell | 6.83e-07 | 121 |
embryonic cell | 6.93e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 3.44e-10 | 62 |
striated muscle tissue | 3.44e-10 | 62 |
myotome | 3.44e-10 | 62 |
dense mesenchyme tissue | 4.99e-10 | 73 |
somite | 5.57e-10 | 71 |
presomitic mesoderm | 5.57e-10 | 71 |
presumptive segmental plate | 5.57e-10 | 71 |
dermomyotome | 5.57e-10 | 71 |
trunk paraxial mesoderm | 5.57e-10 | 71 |
muscle tissue | 6.31e-10 | 64 |
musculature | 6.31e-10 | 64 |
musculature of body | 6.31e-10 | 64 |
multilaminar epithelium | 9.69e-10 | 83 |
paraxial mesoderm | 1.44e-09 | 72 |
presumptive paraxial mesoderm | 1.44e-09 | 72 |
trunk mesenchyme | 3.36e-09 | 122 |
epithelial vesicle | 1.58e-08 | 78 |
surface structure | 1.63e-08 | 99 |
integument | 4.81e-08 | 46 |
integumental system | 4.81e-08 | 46 |
mesenchyme | 1.07e-07 | 160 |
entire embryonic mesenchyme | 1.07e-07 | 160 |
unilaminar epithelium | 6.33e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.36e-09 | 14 |