FFCP PHASE1:Hg19::chr7:93690435..93690467,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000438538_5end | |association_with_transcript=0bp_to_ENST00000438538_5end | ||
|cluster_id=chr7:93690435..93690467,+ | |||
|coexpression_cluster_id=C2908 | |coexpression_cluster_id=C2908 | ||
|description=CAGE_peak_3_at_ENST00000438538_5end | |description=CAGE_peak_3_at_ENST00000438538_5end | ||
|id=chr7:93690435..93690467,+ | |id=chr7:93690435..93690467,+ | ||
|ontology_enrichment_celltype=CL:0002593;4.38e-12;2!CL:0002595;1.90e-10;5!CL:0000319;3.67e-07;1 | |ontology_enrichment_celltype=CL:0002057!2.94e-15!42;CL:0000860!7.46e-14!45;CL:0000048!1.36e-11!430;CL:0000723!3.70e-11!436;CL:0000034!1.34e-10!444;CL:0002009!8.63e-10!65;CL:0002194!3.06e-09!63;CL:0000576!3.06e-09!63;CL:0000040!3.06e-09!63;CL:0000559!3.06e-09!63;CL:0000557!1.72e-08!71;CL:0000839!8.62e-08!70;CL:0000134!9.73e-08!358;CL:0000219!1.59e-07!390;CL:0002320!2.66e-07!365;CL:0002595!3.86e-07!5;CL:0002334!5.90e-07!12;CL:0002371!7.10e-07!591;CL:0000766!8.91e-07!76 | ||
| | |ontology_enrichment_celltype_v019=CL:0002593;4.38e-12;2!CL:0002595;1.90e-10;5!CL:0000319;3.67e-07;1 | ||
|ontology_enrichment_disease=DOID:2394;1.08e-24;14!DOID:120;1.47e-15;27!DOID:193;2.22e-14;29!DOID:201;3.02e-09;6!DOID:0060100;3.02e-09;6!DOID:0060085;2.22e-07;1!DOID:3165;2.22e-07;1!DOID:0060121;2.22e-07;1!DOID:2438;2.22e-07;1!DOID:4418;2.22e-07;1!DOID:3030;3.67e-07;1!DOID:3347;6.20e-07;1 | |ontology_enrichment_celltype_v019_2=CL:0002593,3.13e-12,2;CL:0002595,1.78e-10,5;CL:0000319,3.78e-07,1 | ||
|ontology_enrichment_uberon=UBERON:0002119;5.67e-24;4!UBERON:0000992;1.14e-20;13!UBERON:0000991;1.87e-12;21!UBERON:0002456;4.38e-12;2!UBERON:0003834;1.90e-10;5!UBERON:0001533;1.90e-10;5!UBERON:0002118;2.27e-10;5!UBERON:0003134;8.67e-10;33!UBERON:0003513;1.35e-07;7!UBERON:0003100;2.03e-07;41!UBERON:0000474;5.71e-07;37 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:2394!4.82e-17!14;DOID:120!8.21e-11!27;DOID:193!7.87e-10!29;DOID:0060072!8.04e-09!4 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.08e-24;14!DOID:120;1.47e-15;27!DOID:193;2.22e-14;29!DOID:201;3.02e-09;6!DOID:0060100;3.02e-09;6!DOID:0060085;2.22e-07;1!DOID:3165;2.22e-07;1!DOID:0060121;2.22e-07;1!DOID:2438;2.22e-07;1!DOID:4418;2.22e-07;1!DOID:3030;3.67e-07;1!DOID:3347;6.20e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.55e-25,14;DOID:120,1.37e-15,27;DOID:193,2.08e-14,29;DOID:201,2.98e-09,6;DOID:0060100,2.98e-09,6;DOID:0060085,2.22e-07,1;DOID:3165,2.22e-07,1;DOID:0060121,2.22e-07,1;DOID:2438,2.22e-07,1;DOID:4418,2.22e-07,1;DOID:3030,3.78e-07,1;DOID:3347,5.69e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000992!4.21e-10!13;UBERON:0002119!4.89e-10!4;UBERON:0004531!4.89e-10!4;UBERON:0002204!9.78e-09!167;UBERON:0003134!3.16e-08!37;UBERON:0000474!3.16e-08!37;UBERON:0002371!1.03e-07!80;UBERON:0001474!1.24e-07!86;UBERON:0004573!1.76e-07!33;UBERON:0004571!1.76e-07!33;UBERON:0002118!2.42e-07!5;UBERON:0004532!2.42e-07!5;UBERON:0003834!3.86e-07!5;UBERON:0001533!3.86e-07!5;UBERON:0002384!3.98e-07!375;UBERON:0003100!4.38e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0002119;5.67e-24;4!UBERON:0000992;1.14e-20;13!UBERON:0000991;1.87e-12;21!UBERON:0002456;4.38e-12;2!UBERON:0003834;1.90e-10;5!UBERON:0001533;1.90e-10;5!UBERON:0002118;2.27e-10;5!UBERON:0003134;8.67e-10;33!UBERON:0003513;1.35e-07;7!UBERON:0003100;2.03e-07;41!UBERON:0000474;5.71e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002119,5.51e-24,4;UBERON:0000992,8.51e-21,13;UBERON:0000991,1.56e-12,21;UBERON:0009196,1.56e-12,21;UBERON:0009117,1.56e-12,21;UBERON:0005564,1.56e-12,21;UBERON:0002456,3.13e-12,2;UBERON:0004176,6.38e-12,22;UBERON:0002118,1.66e-10,5;UBERON:0003834,1.78e-10,5;UBERON:0001533,1.78e-10,5;UBERON:0003134,9.16e-09,37;UBERON:0000474,9.16e-09,37;UBERON:0003100,8.62e-08,41;UBERON:0003513,1.29e-07,7 | |||
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| ||
|short_description=p3@ENST00000438538 | |short_description=p3@ENST00000438538 | ||
}} | }} |
Latest revision as of 12:40, 31 July 2015
Short description: | p3@ENST00000438538 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ENST00000438538_5end |
Coexpression cluster: | C2908_squamous_fibrous_large_mesenchymal_giant_Renal_serous |
Association with transcript: | 0bp_to_ENST00000438538_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the internal thoracic artery | 3.13e-12 | 2 |
smooth muscle cell of the subclavian artery | 1.78e-10 | 5 |
mucus secreting cell | 3.78e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
left ovary | 5.51e-24 | 4 |
female gonad | 8.51e-21 | 13 |
gonad | 1.56e-12 | 21 |
indifferent external genitalia | 1.56e-12 | 21 |
indifferent gonad | 1.56e-12 | 21 |
gonad primordium | 1.56e-12 | 21 |
internal thoracic artery | 3.13e-12 | 2 |
external genitalia | 6.38e-12 | 22 |
right ovary | 1.66e-10 | 5 |
thoracic segment blood vessel | 1.78e-10 | 5 |
subclavian artery | 1.78e-10 | 5 |
female reproductive organ | 9.16e-09 | 37 |
female reproductive system | 9.16e-09 | 37 |
female organism | 8.62e-08 | 41 |
trunk blood vessel | 1.29e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.55e-25 | 14 |
female reproductive organ cancer | 1.37e-15 | 27 |
reproductive organ cancer | 2.08e-14 | 29 |
connective tissue cancer | 2.98e-09 | 6 |
musculoskeletal system cancer | 2.98e-09 | 6 |
organ system benign neoplasm | 2.22e-07 | 1 |
skin benign neoplasm | 2.22e-07 | 1 |
integumentary system benign neoplasm | 2.22e-07 | 1 |
dermis tumor | 2.22e-07 | 1 |
cutaneous fibrous histiocytoma | 2.22e-07 | 1 |
mucinous adenocarcinoma | 3.78e-07 | 1 |
osteosarcoma | 5.69e-07 | 1 |