FFCP PHASE1:Hg19::chr9:130915665..130915685,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:130915665..130915685,- | |||
|coexpression_cluster_id=C484 | |coexpression_cluster_id=C484 | ||
|description=CAGE_peak_at_chr9:130915665..130915685,- | |description=CAGE_peak_at_chr9:130915665..130915685,- | ||
|id=chr9:130915665..130915685,- | |id=chr9:130915665..130915685,- | ||
|ontology_enrichment_celltype=CL:0000066!5.51e-13!254;CL:0002076!5.74e-10!43;CL:0000223!3.49e-09!59;CL:0002251!9.38e-08!21 | |ontology_enrichment_celltype=CL:0000066!5.51e-13!254;CL:0002076!5.74e-10!43;CL:0000223!3.49e-09!59;CL:0002251!9.38e-08!21 | ||
|ontology_enrichment_celltype_v019=CL:1001319;1.07e-14;1!CL:1000600;1.07e-14;1 | |||
|ontology_enrichment_celltype_v019_2=CL:1001319,1.07e-14,1;CL:1000600,1.07e-14,1;CL:0000066,2.34e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!2.59e-24!14;DOID:305!4.16e-22!106;DOID:0050687!1.61e-14!143;DOID:299!3.01e-13!25;DOID:3493!1.11e-08!2;DOID:4929!1.74e-08!2;DOID:162!1.70e-07!235;DOID:14566!3.37e-07!239;DOID:4362!4.68e-07!5 | |ontology_enrichment_disease=DOID:1749!2.59e-24!14;DOID:305!4.16e-22!106;DOID:0050687!1.61e-14!143;DOID:299!3.01e-13!25;DOID:3493!1.11e-08!2;DOID:4929!1.74e-08!2;DOID:162!1.70e-07!235;DOID:14566!3.37e-07!239;DOID:4362!4.68e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:3111;2.11e-14;1!DOID:3603;2.11e-14;1!DOID:299;3.52e-13;25!DOID:1749;4.07e-09;14!DOID:3493;4.53e-08;2!DOID:4468;7.52e-08;2!DOID:4929;7.52e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,3.15e-14,1;DOID:3603,3.15e-14,1;DOID:305,6.89e-14,106;DOID:299,3.76e-13,25;DOID:0050687,5.88e-10,143;DOID:1749,4.07e-09,14;DOID:3493,4.38e-08,2;DOID:4929,7.03e-08,2;DOID:4468,7.52e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.72e-13!169;UBERON:0000925!7.72e-13!169;UBERON:0006595!7.72e-13!169;UBERON:0001007!2.47e-12!155;UBERON:0001555!2.47e-12!155;UBERON:0007026!2.47e-12!155;UBERON:0006562!2.66e-11!11;UBERON:0004921!2.88e-11!129;UBERON:0004185!2.88e-11!129;UBERON:0000077!3.37e-11!130;UBERON:0000344!2.22e-10!12;UBERON:0000161!3.12e-10!35;UBERON:0001041!7.38e-10!98;UBERON:0000002!9.26e-10!6;UBERON:0001560!9.26e-10!6;UBERON:0001004!6.66e-09!72;UBERON:0002394!7.12e-09!4;UBERON:0003928!7.12e-09!4;UBERON:0001042!1.26e-08!10;UBERON:0009145!1.26e-08!10;UBERON:0002294!1.34e-08!7;UBERON:0001173!1.34e-08!7;UBERON:0004912!1.34e-08!7;UBERON:0005911!1.77e-08!82;UBERON:0003343!1.96e-08!4;UBERON:0004785!1.96e-08!4;UBERON:0000974!2.50e-08!10;UBERON:0000466!1.30e-07!126;UBERON:0000166!1.84e-07!21;UBERON:0000065!3.42e-07!53;UBERON:0003929!7.09e-07!54;UBERON:0003729!7.90e-07!5 | |ontology_enrichment_uberon=UBERON:0004119!7.72e-13!169;UBERON:0000925!7.72e-13!169;UBERON:0006595!7.72e-13!169;UBERON:0001007!2.47e-12!155;UBERON:0001555!2.47e-12!155;UBERON:0007026!2.47e-12!155;UBERON:0006562!2.66e-11!11;UBERON:0004921!2.88e-11!129;UBERON:0004185!2.88e-11!129;UBERON:0000077!3.37e-11!130;UBERON:0000344!2.22e-10!12;UBERON:0000161!3.12e-10!35;UBERON:0001041!7.38e-10!98;UBERON:0000002!9.26e-10!6;UBERON:0001560!9.26e-10!6;UBERON:0001004!6.66e-09!72;UBERON:0002394!7.12e-09!4;UBERON:0003928!7.12e-09!4;UBERON:0001042!1.26e-08!10;UBERON:0009145!1.26e-08!10;UBERON:0002294!1.34e-08!7;UBERON:0001173!1.34e-08!7;UBERON:0004912!1.34e-08!7;UBERON:0005911!1.77e-08!82;UBERON:0003343!1.96e-08!4;UBERON:0004785!1.96e-08!4;UBERON:0000974!2.50e-08!10;UBERON:0000466!1.30e-07!126;UBERON:0000166!1.84e-07!21;UBERON:0000065!3.42e-07!53;UBERON:0003929!7.09e-07!54;UBERON:0003729!7.90e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0004645;1.07e-14;1!UBERON:0001256;1.07e-14;1!UBERON:0001259;1.07e-14;1!UBERON:0006562;3.56e-08;2!UBERON:0001255;5.37e-08;2!UBERON:0003127;5.37e-08;2!UBERON:0001556;5.37e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,1.07e-14,1;UBERON:0001256,1.07e-14,1;UBERON:0001259,1.07e-14,1;UBERON:0003127,5.02e-08,2;UBERON:0001255,5.37e-08,2;UBERON:0001556,5.37e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05156351317944,0,0,0,0.451199612907412,0.308061348417659,0,0,0,0,0,0,0,0,0,0,1.66215201785745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,7.33986816169998,0,0,0,0,0,0,0,0,0,0,1.4793148277115,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.557694977114413,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30586246527318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0.853828638089378,0,0,0,0.435296032902013,0,0,0,0,0,0,0,1.12990370390266,0,0,0,0,0.400794101257669,0,0.999048047910651,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0.342173675768659,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05656061679314,0,0,0,0,0,0.839277046316667,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0,0.462102664601353,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,18.1422647248225,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,3.43660302816075,0,0,0.223710863595585,4.1223098118402,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322289439867886,0,14.9985308428752,1.05868461514708,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0.684466602170562,0.26940821205835,3.65783247502649,0,3.5003405502719,0,0,1.43720323370539,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05156351317944,0,0,0,0.451199612907412,0.308061348417659,0,0,0,0,0,0,0,0,0,0,1.66215201785745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,7.33986816169998,0,0,0,0,0,0,0,0,0,0,1.4793148277115,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.557694977114413,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30586246527318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0.853828638089378,0,0,0,0.435296032902013,0,0,0,0,0,0,0,1.12990370390266,0,0,0,0,0.400794101257669,0,0.999048047910651,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0.342173675768659,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05656061679314,0,0,0,0,0,0.839277046316667,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0,0.462102664601353,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,18.1422647248225,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,3.43660302816075,0,0,0.223710863595585,4.1223098118402,0.365753774946808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322289439867886,0,14.9985308428752,1.05868461514708,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0.684466602170562,0.26940821205835,3.65783247502649,0,3.5003405502719,0,0,1.43720323370539,0,0,0,0,0,0 | ||
|short_description=p@chr9:130915665..130915685,- | |short_description=p@chr9:130915665..130915685,- | ||
}} | }} |
Latest revision as of 23:08, 31 July 2015
Short description: | p@chr9:130915665..130915685, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:130915665..130915685, - |
Coexpression cluster: | C484_squamous_pharyngeal_bile_transitionalcell_Prostate_signet_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 1.07e-14 | 1 |
lower urinary tract cell | 1.07e-14 | 1 |
epithelial cell | 2.34e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 1.07e-14 | 1 |
wall of urinary bladder | 1.07e-14 | 1 |
mucosa of urinary bladder | 1.07e-14 | 1 |
open tracheal system trachea | 5.02e-08 | 2 |
urinary bladder | 5.37e-08 | 2 |
lower urinary tract | 5.37e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 3.15e-14 | 1 |
mucinous cystadenocarcinoma | 3.15e-14 | 1 |
carcinoma | 6.89e-14 | 106 |
adenocarcinoma | 3.76e-13 | 25 |
cell type cancer | 5.88e-10 | 143 |
squamous cell carcinoma | 4.07e-09 | 14 |
signet ring cell adenocarcinoma | 4.38e-08 | 2 |
tubular adenocarcinoma | 7.03e-08 | 2 |
clear cell adenocarcinoma | 7.52e-08 | 2 |