FFCP PHASE1:Hg19::chrX:118425471..118425477,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_ENST00000428222_5end | |association_with_transcript=-14bp_to_ENST00000428222_5end | ||
|cluster_id=chrX:118425471..118425477,+ | |||
|coexpression_cluster_id=C535 | |coexpression_cluster_id=C535 | ||
|description=CAGE_peak_1_at_ENST00000428222_5end | |description=CAGE_peak_1_at_ENST00000428222_5end | ||
|id=chrX:118425471..118425477,+ | |id=chrX:118425471..118425477,+ | ||
|ontology_enrichment_celltype=CL:0000817!1.50e-09!3;CL:0000946!1.04e-07!1;CL:0000786!1.04e-07!1;CL:0000980!1.04e-07!1 | |ontology_enrichment_celltype=CL:0000817!1.50e-09!3;CL:0000946!1.04e-07!1;CL:0000786!1.04e-07!1;CL:0000980!1.04e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000346;1.12e-17;3!CL:1000428;1.12e-17;3!CL:0000243;9.17e-13;15!CL:0000125;9.17e-13;15!CL:0000095;1.55e-11;17!CL:0002559;3.60e-11;5!CL:0002319;1.98e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,1.12e-17,3;CL:1000428,1.12e-17,3;CL:0000243,9.17e-13,15;CL:0000125,9.17e-13,15;CL:0000030,9.17e-13,15;CL:0000339,9.17e-13,15;CL:0000095,1.55e-11,17;CL:0000123,1.55e-11,17;CL:0000333,2.84e-11,41;CL:0002559,3.60e-11,5;CL:0002319,1.98e-08,25;CL:0000133,3.34e-08,59;CL:0000221,6.64e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006238;4.28e-19;10!UBERON:0003056;7.35e-18;3!CL:0000339;9.17e-13;15 | |||
|ontology_enrichment_disease=DOID:1799!4.07e-08!1;DOID:10165!4.07e-08!1;DOID:1798!4.07e-08!1 | |ontology_enrichment_disease=DOID:1799!4.07e-08!1;DOID:10165!4.07e-08!1;DOID:1798!4.07e-08!1 | ||
|ontology_enrichment_disease_v019=DOID:3093;1.33e-17;11!DOID:5409;1.13e-13;4!DOID:1325;2.18e-08;7!DOID:3904;2.18e-08;7!DOID:3905;8.37e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.33e-17,11;DOID:5409,1.13e-13,4;DOID:1325,2.18e-08,7;DOID:3904,2.18e-08,7;DOID:3905,8.37e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0002363!8.51e-08!1;UBERON:0007647!8.51e-08!1;UBERON:0010115!8.51e-08!1;UBERON:0002372!1.87e-07!1;UBERON:0001961!1.87e-07!1;UBERON:0001744!1.87e-07!1;UBERON:0001735!1.87e-07!1 | |ontology_enrichment_uberon=UBERON:0002363!8.51e-08!1;UBERON:0007647!8.51e-08!1;UBERON:0010115!8.51e-08!1;UBERON:0002372!1.87e-07!1;UBERON:0001961!1.87e-07!1;UBERON:0001744!1.87e-07!1;UBERON:0001735!1.87e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000412;1.12e-17;3!UBERON:0001992;1.12e-17;3!UBERON:0000966;2.80e-11;5!UBERON:0005388;2.80e-11;5!UBERON:0001802;2.80e-11;5!UBERON:0002073;3.60e-11;5!UBERON:0002067;8.85e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,1.12e-17,3;UBERON:0001992,1.12e-17,3;UBERON:0002073,3.60e-11,5;UBERON:0005086,3.60e-11,5;UBERON:0000966,1.22e-09,6;UBERON:0005388,1.22e-09,6;UBERON:0001802,1.22e-09,6;UBERON:0005085,1.92e-07,31;UBERON:0002067,8.85e-07,9;UBERON:0004016,8.85e-07,9;UBERON:0010083,8.85e-07,9 | |||
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|short_description=p1@ENST00000428222 | |short_description=p1@ENST00000428222 | ||
}} | }} |
Latest revision as of 05:17, 1 August 2015
Short description: | p1@ENST00000428222 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000428222_5end |
Coexpression cluster: | C535_medulloblastoma_small_pineal_retinoblastoma_eye_Retinal_retina |
Association with transcript: | -14bp_to_ENST00000428222_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 1.12e-17 | 3 |
stem cell of epidermis | 1.12e-17 | 3 |
glial cell (sensu Vertebrata) | 9.17e-13 | 15 |
glial cell | 9.17e-13 | 15 |
glioblast | 9.17e-13 | 15 |
glioblast (sensu Vertebrata) | 9.17e-13 | 15 |
neuron associated cell | 1.55e-11 | 17 |
neuron associated cell (sensu Vertebrata) | 1.55e-11 | 17 |
migratory neural crest cell | 2.84e-11 | 41 |
hair follicle cell | 3.60e-11 | 5 |
neural cell | 1.98e-08 | 25 |
neurectodermal cell | 3.34e-08 | 59 |
ectodermal cell | 6.64e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 1.12e-17 | 3 |
papillary layer of dermis | 1.12e-17 | 3 |
hair follicle | 3.60e-11 | 5 |
hair follicle placode | 3.60e-11 | 5 |
retina | 1.22e-09 | 6 |
photoreceptor array | 1.22e-09 | 6 |
posterior segment of eyeball | 1.22e-09 | 6 |
ectodermal placode | 1.92e-07 | 31 |
dermis | 8.85e-07 | 9 |
dermatome | 8.85e-07 | 9 |
future dermis | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.33e-17 | 11 |
lung small cell carcinoma | 1.13e-13 | 4 |
bronchus cancer | 2.18e-08 | 7 |
bronchogenic carcinoma | 2.18e-08 | 7 |
lung carcinoma | 8.37e-07 | 9 |