FFCP PHASE1:Hg19::chrX:37765364..37765390,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:37765364..37765390,+ to FFCP PHASE1:Hg19::chrX:37765364..37765390,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-9bp_to_ENST00000449263_5end | |||
|cluster_id=chrX:37765364..37765390,+ | |||
|coexpression_cluster_id=C4871 | |||
|description=CAGE_peak_3_at_ENST00000449263_5end | |||
|id=chrX:37765364..37765390,+ | |||
|ontology_enrichment_celltype=CL:0000128!2.38e-08!7;CL:0000126!2.38e-08!7;CL:0000127!2.38e-08!7;CL:0002453!2.38e-08!7;CL:0000133!1.10e-07!59;CL:0002319!1.28e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000064;6.09e-15;3!CL:0000067;6.09e-15;3!CL:0005012;6.09e-15;3!CL:0002304;6.09e-15;3!CL:0000128;1.09e-11;7!CL:0000126;1.09e-11;7!CL:0000127;1.09e-11;7!CL:0002603;2.26e-07;3!CL:0000346;3.76e-07;3!CL:1000428;3.76e-07;3!CL:0002586;3.76e-07;3!CL:0000243;3.78e-07;15!CL:0000125;3.78e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,4.07e-15,3;CL:0000067,4.07e-15,3;CL:0005012,4.07e-15,3;CL:0002304,4.07e-15,3;CL:0000128,9.13e-12,7;CL:0000126,9.13e-12,7;CL:0000127,9.13e-12,7;CL:0002453,9.13e-12,7;CL:0000133,5.30e-09,59;CL:0002603,1.87e-07,3;CL:0000243,3.31e-07,15;CL:0000125,3.31e-07,15;CL:0000030,3.31e-07,15;CL:0000339,3.31e-07,15;CL:0000346,3.32e-07,3;CL:1000428,3.32e-07,3;CL:0002586,4.99e-07,3;CL:0000221,5.19e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000339;3.78e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.58e-20!86;UBERON:0000073!1.92e-18!94;UBERON:0001016!1.92e-18!94;UBERON:0003056!3.07e-18!61;UBERON:0001017!2.76e-17!82;UBERON:0000955!2.29e-16!69;UBERON:0006238!2.29e-16!69;UBERON:0004121!3.27e-15!169;UBERON:0000033!6.54e-15!123;UBERON:0003075!8.75e-15!86;UBERON:0007284!8.75e-15!86;UBERON:0002616!9.87e-15!59;UBERON:0000924!1.82e-14!173;UBERON:0006601!1.82e-14!173;UBERON:0001869!3.13e-14!32;UBERON:0007625!1.25e-13!11;UBERON:0002346!1.28e-13!90;UBERON:0000153!1.45e-13!129;UBERON:0007811!1.45e-13!129;UBERON:0002020!3.00e-13!34;UBERON:0003528!3.00e-13!34;UBERON:0001893!4.76e-13!34;UBERON:0002791!2.80e-12!33;UBERON:0002780!4.53e-12!41;UBERON:0001890!4.53e-12!41;UBERON:0006240!4.53e-12!41;UBERON:0001049!8.01e-12!57;UBERON:0005068!8.01e-12!57;UBERON:0006241!8.01e-12!57;UBERON:0007135!8.01e-12!57;UBERON:0003080!1.24e-11!42;UBERON:0000956!4.27e-11!25;UBERON:0000203!4.27e-11!25;UBERON:0002200!2.48e-08!11;UBERON:0006876!2.48e-08!11;UBERON:0002619!3.87e-08!22;UBERON:0000019!5.88e-08!19;UBERON:0000047!5.88e-08!19;UBERON:0004088!5.88e-08!19;UBERON:0003072!5.88e-08!19;UBERON:0003071!5.88e-08!19;UBERON:0004128!5.88e-08!19;UBERON:0000349!1.85e-07!5;UBERON:0000970!2.06e-07!20;UBERON:0000488!3.12e-07!4;UBERON:0005085!3.15e-07!29;UBERON:0000475!3.43e-07!365;UBERON:0002104!6.35e-07!21;UBERON:0001456!6.35e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;7.54e-27;11!UBERON:0000488;3.20e-19;4!UBERON:0010371;5.03e-16;31!UBERON:0000019;5.04e-15;19!UBERON:0000047;5.04e-15;19!UBERON:0004088;5.04e-15;19!UBERON:0010230;5.04e-15;19!UBERON:0001778;6.09e-15;3!UBERON:0001775;6.09e-15;3!UBERON:0000970;3.28e-14;20!UBERON:0002104;1.79e-13;21!UBERON:0001456;1.79e-13;21!UBERON:0002203;7.18e-13;6!UBERON:0001768;7.18e-13;6!UBERON:0002200;7.18e-13;6!UBERON:0000020;3.41e-12;23!UBERON:0001801;5.13e-12;14!UBERON:0001032;1.24e-11;24!UBERON:0004456;1.24e-11;24!UBERON:0006876;1.02e-10;11!UBERON:0001781;3.76e-07;3!UBERON:0000412;3.76e-07;3!UBERON:0001782;3.76e-07;3!UBERON:0001992;3.76e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,8.15e-27,11;UBERON:0000488,2.41e-19,4;UBERON:0001778,4.07e-15,3;UBERON:0001775,4.07e-15,3;UBERON:0000019,3.42e-14,20;UBERON:0000047,3.42e-14,20;UBERON:0010312,3.42e-14,20;UBERON:0004088,3.42e-14,20;UBERON:0010230,3.42e-14,20;UBERON:0003072,3.42e-14,20;UBERON:0004128,3.42e-14,20;UBERON:0003071,3.42e-14,20;UBERON:0005085,1.41e-13,31;UBERON:0000970,1.86e-13,21;UBERON:0002104,1.86e-13,21;UBERON:0002203,5.97e-13,6;UBERON:0001768,5.97e-13,6;UBERON:0002200,5.97e-13,6;UBERON:0001456,8.66e-13,22;UBERON:0001801,4.48e-12,14;UBERON:0000020,1.28e-11,24;UBERON:0001032,1.28e-11,24;UBERON:0004456,1.28e-11,24;UBERON:0006876,8.58e-11,11;UBERON:0004121,1.26e-09,171;UBERON:0000924,1.26e-09,171;UBERON:0006601,1.26e-09,171;UBERON:0010371,1.78e-09,104;UBERON:0003056,8.91e-09,61;UBERON:0003075,2.09e-08,82;UBERON:0007284,2.09e-08,82;UBERON:0002346,6.89e-08,86;UBERON:0000412,3.32e-07,3;UBERON:0001992,3.32e-07,3;UBERON:0001782,4.99e-07,3;UBERON:0005424,4.99e-07,3 | |||
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| ||
|short_description=p3@ENST00000449263 | |||
}} | }} |
Latest revision as of 07:56, 1 August 2015
Short description: | p3@ENST00000449263 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ENST00000449263_5end |
Coexpression cluster: | C4871_Mesenchymal_astrocytoma_tubular_melanoma_Prostate_MCF7_mesenchymal |
Association with transcript: | -9bp_to_ENST00000449263_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 4.07e-15 | 3 |
ciliated epithelial cell | 4.07e-15 | 3 |
multi-ciliated epithelial cell | 4.07e-15 | 3 |
non-pigmented ciliary epithelial cell | 4.07e-15 | 3 |
oligodendrocyte | 9.13e-12 | 7 |
macroglial cell | 9.13e-12 | 7 |
astrocyte | 9.13e-12 | 7 |
oligodendrocyte precursor cell | 9.13e-12 | 7 |
neurectodermal cell | 5.30e-09 | 59 |
astrocyte of the cerebellum | 1.87e-07 | 3 |
glial cell (sensu Vertebrata) | 3.31e-07 | 15 |
glial cell | 3.31e-07 | 15 |
glioblast | 3.31e-07 | 15 |
glioblast (sensu Vertebrata) | 3.31e-07 | 15 |
hair follicle dermal papilla cell | 3.32e-07 | 3 |
stem cell of epidermis | 3.32e-07 | 3 |
retinal pigment epithelial cell | 4.99e-07 | 3 |
ectodermal cell | 5.19e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 8.15e-27 | 11 |
atypical epithelium | 2.41e-19 | 4 |
ciliary epithelium | 4.07e-15 | 3 |
ciliary body | 4.07e-15 | 3 |
camera-type eye | 3.42e-14 | 20 |
simple eye | 3.42e-14 | 20 |
immature eye | 3.42e-14 | 20 |
ocular region | 3.42e-14 | 20 |
eyeball of camera-type eye | 3.42e-14 | 20 |
optic cup | 3.42e-14 | 20 |
optic vesicle | 3.42e-14 | 20 |
eye primordium | 3.42e-14 | 20 |
ectodermal placode | 1.41e-13 | 31 |
eye | 1.86e-13 | 21 |
visual system | 1.86e-13 | 21 |
vasculature of eye | 5.97e-13 | 6 |
uvea | 5.97e-13 | 6 |
vasculature of head | 5.97e-13 | 6 |
face | 8.66e-13 | 22 |
anterior segment of eyeball | 4.48e-12 | 14 |
sense organ | 1.28e-11 | 24 |
sensory system | 1.28e-11 | 24 |
entire sense organ system | 1.28e-11 | 24 |
vasculature of organ | 8.58e-11 | 11 |
ectoderm-derived structure | 1.26e-09 | 171 |
ectoderm | 1.26e-09 | 171 |
presumptive ectoderm | 1.26e-09 | 171 |
ecto-epithelium | 1.78e-09 | 104 |
pre-chordal neural plate | 8.91e-09 | 61 |
neural plate | 2.09e-08 | 82 |
presumptive neural plate | 2.09e-08 | 82 |
neurectoderm | 6.89e-08 | 86 |
dermal papilla | 3.32e-07 | 3 |
papillary layer of dermis | 3.32e-07 | 3 |
pigmented layer of retina | 4.99e-07 | 3 |
presumptive retinal pigmented epithelium | 4.99e-07 | 3 |