FFCP PHASE1:Mm9::chr10:59569115..59569148,+: Difference between revisions
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{{FFCP|EntrezGene=94214|HGNC=|MCL_coexpression_id=1|UniProt=Q6PAN0|association_with_transcript=-67bp_to_ENSMUST00000165024_5end|description=CAGE_peak_6_at_Spock2_5end|id=chr10:59569115..59569148,+|ontology_enrichment_celltype=CL:0000117!6.70e-09!23;CL:0000337!6.70e-09!23;CL:0000540!1.39e-08!33;CL:0000047!1.39e-08!33;CL:0000031!1.39e-08!33;CL:0000404!1.39e-08!33;CL:0000221!2.31e-08!44;CL:0000133!2.31e-08!44;CL:0002319!5.05e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,3.67e-09,23;CL:0000337,3.67e-09,23;CL:0000540,2.22e-08,33;CL:0000047,2.22e-08,33;CL:0000031,2.22e-08,33;CL:0000404,2.22e-08,33;CL:0000221,3.28e-08,44;CL:0000133,3.28e-08,44;CL:0002319,7.25e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.94e-23!73;UBERON:0005743!1.94e-23!73;UBERON:0000073!5.73e-23!75;UBERON:0001016!5.73e-23!75;UBERON:0004121!4.74e-22!102;UBERON:0000924!4.74e-22!102;UBERON:0006601!4.74e-22!102;UBERON:0002346!8.77e-21!71;UBERON:0003075!8.77e-21!71;UBERON:0007284!8.77e-21!71;UBERON:0001049!9.38e-20!52;UBERON:0005068!9.38e-20!52;UBERON:0006241!9.38e-20!52;UBERON:0007135!9.38e-20!52;UBERON:0000033!2.86e-19!63;UBERON:0000955!6.90e-19!50;UBERON:0006238!6.90e-19!50;UBERON:0002616!3.09e-18!49;UBERON:0003056!2.46e-14!49;UBERON:0003080!1.96e-13!40;UBERON:0007811!6.81e-13!86;UBERON:0002780!8.29e-13!39;UBERON:0001890!8.29e-13!39;UBERON:0006240!8.29e-13!39;UBERON:0002020!8.80e-13!34;UBERON:0000153!1.49e-12!94;UBERON:0002791!4.58e-10!29;UBERON:0003528!4.58e-10!29;UBERON:0001893!4.58e-10!29;UBERON:0000468!8.25e-09!333;UBERON:0003076!2.84e-07!12;UBERON:0003057!2.84e-07!12;UBERON:0002021!8.05e-07!10;UBERON:0000411!8.05e-07!10;UBERON:0001950!8.05e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.20e-23,73;UBERON:0001016,3.57e-23,75;UBERON:0000073,5.95e-22,54;UBERON:0002346,2.99e-21,64;UBERON:0003075,2.99e-21,64;UBERON:0007284,2.99e-21,64;UBERON:0004121,1.24e-20,95;UBERON:0000924,1.24e-20,95;UBERON:0006601,1.24e-20,95;UBERON:0001049,2.10e-20,52;UBERON:0005068,2.10e-20,52;UBERON:0006241,2.10e-20,52;UBERON:0007135,2.10e-20,52;UBERON:0010371,1.16e-19,73;UBERON:0010314,1.58e-17,92;UBERON:0000955,2.63e-17,47;UBERON:0006238,2.63e-17,47;UBERON:0002616,1.19e-16,46;UBERON:0003056,8.62e-15,49;UBERON:0003080,7.41e-14,40;UBERON:0002780,3.29e-13,39;UBERON:0001890,3.29e-13,39;UBERON:0006240,3.29e-13,39;UBERON:0002020,3.50e-13,34;UBERON:0003528,2.28e-10,29;UBERON:0002791,2.28e-10,29;UBERON:0001893,2.28e-10,29;UBERON:0003076,1.77e-07,12;UBERON:0003057,1.77e-07,12;UBERON:0002021,5.21e-07,10;UBERON:0000411,5.21e-07,10;UBERON:0001950,5.21e-07,10;UBERON:0004111,5.92e-07,122;UBERON:0000025,7.81e-07,114|phase1_expression=17.6163731815273,0,0,0,0,0.33575854382378,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,9.18467533631554,1.98581902401771,0.522399578277871,0,0.22940928106717,0,0,0.215471232685889,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3006528539167,1.96222640742402,2.85592037554813,1.55543919259427,2.51975558925653,5.75010257459886,0,0,0,0.514518872071894,1.71920063963254,4.64104883049698,14.3644687210314,13.2247744818008,8.23980824558033,0.338844532069132,0.889294796111139,0,0,0,1.49800055259202,2.68952813725088,2.59224030771194,3.91517221161903,2.52389953621658,37.1346279724945,28.4920417827581,1.95985278743926,2.58782771749238,2.75765635983006,74.8787990795843,68.8234752279162,65.1291701006472,10.1552441552249,8.78281378583133,8.33461392890816,73.4251287373632,49.5231096827878,50.8818165096778,18.2669722993674,23.6336990126511,12.8615617619457,1.06016670666458,3.17400552448499,1.73918693221007,0,0,0,0,0,2.38755514223978,0,0,0,9.71819596459095,0,0,0,0,0.253359865475099,0,1.59857431606684,1.03575153458869,9.94562331734326,2.60227990149204,1.21786191324856,2.99800146432876,3.16517545160507,5.05631440683531,3.64433114856059,0.988779870937496,2.31358971071859,0.884610551949874,1.29413479957927,1.10420759230197,0.484875253135222,0,30.7419836862124,38.3287473468623,0.255457055208591,0,0,0.127070227073065,40.5932632787069,21.5025283324754,4.77486538028885,20.1636211423041,15.3429274398198,53.4015274518069,38.9379031362618,10.9986512958342,3.35898820647251,1.76905930903572,3.36706969418358,2.60240885925407,2.75882525320168,4.50155324513373,3.91832526372859,5.8511389270142,2.69038812598185,4.96619140166563,10.8655415710387,1.5089759505299,0.567318240503458,2.11141348996739,2.6303487891309,3.89266148915837,4.179025998266,4.11564272815887,2.38841120182192,0,0,0,0.207125772535502,0.938104239924385,1.80062061461015,0.946978942340841,1.18058539048442,1.85120535464854,0.930135779001631,1.60964040839772,4.32031766758527,3.94943639792353,1.47750717671186,2.26992666728396,3.21639972335731,2.85415149878366,5.36825675041487,24.814213930567,11.3195073617213,0,0.264450566663544,1.49301775374664,1.16118335930219,1.03093969057675,0.201683524623343,0.667134131534611,1.33157938278791,0.474529061544512,2.14108641141214,1.75934646160189,0.795825888164603,1.55971269695296,0.898819408654221,1.080690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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:94214 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6PAN0 | |||
|association_with_transcript=-67bp_to_ENSMUST00000165024_5end | |||
|cluster_id=chr10:59569115..59569148,+ | |||
|description=CAGE_peak_6_at_Spock2_5end | |||
|id=chr10:59569115..59569148,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.70e-09!23;CL:0000337!6.70e-09!23;CL:0000540!1.39e-08!33;CL:0000047!1.39e-08!33;CL:0000031!1.39e-08!33;CL:0000404!1.39e-08!33;CL:0000221!2.31e-08!44;CL:0000133!2.31e-08!44;CL:0002319!5.05e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.67e-09,23;CL:0000337,3.67e-09,23;CL:0000540,2.22e-08,33;CL:0000047,2.22e-08,33;CL:0000031,2.22e-08,33;CL:0000404,2.22e-08,33;CL:0000221,3.28e-08,44;CL:0000133,3.28e-08,44;CL:0002319,7.25e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.94e-23!73;UBERON:0005743!1.94e-23!73;UBERON:0000073!5.73e-23!75;UBERON:0001016!5.73e-23!75;UBERON:0004121!4.74e-22!102;UBERON:0000924!4.74e-22!102;UBERON:0006601!4.74e-22!102;UBERON:0002346!8.77e-21!71;UBERON:0003075!8.77e-21!71;UBERON:0007284!8.77e-21!71;UBERON:0001049!9.38e-20!52;UBERON:0005068!9.38e-20!52;UBERON:0006241!9.38e-20!52;UBERON:0007135!9.38e-20!52;UBERON:0000033!2.86e-19!63;UBERON:0000955!6.90e-19!50;UBERON:0006238!6.90e-19!50;UBERON:0002616!3.09e-18!49;UBERON:0003056!2.46e-14!49;UBERON:0003080!1.96e-13!40;UBERON:0007811!6.81e-13!86;UBERON:0002780!8.29e-13!39;UBERON:0001890!8.29e-13!39;UBERON:0006240!8.29e-13!39;UBERON:0002020!8.80e-13!34;UBERON:0000153!1.49e-12!94;UBERON:0002791!4.58e-10!29;UBERON:0003528!4.58e-10!29;UBERON:0001893!4.58e-10!29;UBERON:0000468!8.25e-09!333;UBERON:0003076!2.84e-07!12;UBERON:0003057!2.84e-07!12;UBERON:0002021!8.05e-07!10;UBERON:0000411!8.05e-07!10;UBERON:0001950!8.05e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.20e-23,73;UBERON:0001016,3.57e-23,75;UBERON:0000073,5.95e-22,54;UBERON:0002346,2.99e-21,64;UBERON:0003075,2.99e-21,64;UBERON:0007284,2.99e-21,64;UBERON:0004121,1.24e-20,95;UBERON:0000924,1.24e-20,95;UBERON:0006601,1.24e-20,95;UBERON:0001049,2.10e-20,52;UBERON:0005068,2.10e-20,52;UBERON:0006241,2.10e-20,52;UBERON:0007135,2.10e-20,52;UBERON:0010371,1.16e-19,73;UBERON:0010314,1.58e-17,92;UBERON:0000955,2.63e-17,47;UBERON:0006238,2.63e-17,47;UBERON:0002616,1.19e-16,46;UBERON:0003056,8.62e-15,49;UBERON:0003080,7.41e-14,40;UBERON:0002780,3.29e-13,39;UBERON:0001890,3.29e-13,39;UBERON:0006240,3.29e-13,39;UBERON:0002020,3.50e-13,34;UBERON:0003528,2.28e-10,29;UBERON:0002791,2.28e-10,29;UBERON:0001893,2.28e-10,29;UBERON:0003076,1.77e-07,12;UBERON:0003057,1.77e-07,12;UBERON:0002021,5.21e-07,10;UBERON:0000411,5.21e-07,10;UBERON:0001950,5.21e-07,10;UBERON:0004111,5.92e-07,122;UBERON:0000025,7.81e-07,114 | |||
|phase1_expression=17.6163731815273,0,0,0,0,0.33575854382378,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,9.18467533631554,1.98581902401771,0.522399578277871,0,0.22940928106717,0,0,0.215471232685889,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3006528539167,1.96222640742402,2.85592037554813,1.55543919259427,2.51975558925653,5.75010257459886,0,0,0,0.514518872071894,1.71920063963254,4.64104883049698,14.3644687210314,13.2247744818008,8.23980824558033,0.338844532069132,0.889294796111139,0,0,0,1.49800055259202,2.68952813725088,2.59224030771194,3.91517221161903,2.52389953621658,37.1346279724945,28.4920417827581,1.95985278743926,2.58782771749238,2.75765635983006,74.8787990795843,68.8234752279162,65.1291701006472,10.1552441552249,8.78281378583133,8.33461392890816,73.4251287373632,49.5231096827878,50.8818165096778,18.2669722993674,23.6336990126511,12.8615617619457,1.06016670666458,3.17400552448499,1.73918693221007,0,0,0,0,0,2.38755514223978,0,0,0,9.71819596459095,0,0,0,0,0.253359865475099,0,1.59857431606684,1.03575153458869,9.94562331734326,2.60227990149204,1.21786191324856,2.99800146432876,3.16517545160507,5.05631440683531,3.64433114856059,0.988779870937496,2.31358971071859,0.884610551949874,1.29413479957927,1.10420759230197,0.484875253135222,0,30.7419836862124,38.3287473468623,0.255457055208591,0,0,0.127070227073065,40.5932632787069,21.5025283324754,4.77486538028885,20.1636211423041,15.3429274398198,53.4015274518069,38.9379031362618,10.9986512958342,3.35898820647251,1.76905930903572,3.36706969418358,2.60240885925407,2.75882525320168,4.50155324513373,3.91832526372859,5.8511389270142,2.69038812598185,4.96619140166563,10.8655415710387,1.5089759505299,0.567318240503458,2.11141348996739,2.6303487891309,3.89266148915837,4.179025998266,4.11564272815887,2.38841120182192,0,0,0,0.207125772535502,0.938104239924385,1.80062061461015,0.946978942340841,1.18058539048442,1.85120535464854,0.930135779001631,1.60964040839772,4.32031766758527,3.94943639792353,1.47750717671186,2.26992666728396,3.21639972335731,2.85415149878366,5.36825675041487,24.814213930567,11.3195073617213,0,0.264450566663544,1.49301775374664,1.16118335930219,1.03093969057675,0.201683524623343,0.667134131534611,1.33157938278791,0.474529061544512,2.14108641141214,1.75934646160189,0.795825888164603,1.55971269695296,0.898819408654221,1.08069024937347,0.597423819763102,7.39704813717019,8.45438993311993,5.63538678365402,6.10953983535943,8.53390943537553,7.43439690837377,0.885311519739602,0.147610147979602,0.31399745568275,0.246794327843601,0.296452627087149,0.333690211432188,0,0,0,0,0,0,0,0,0,0.744281895337007,0,0,0,0,9.60716588866344,1.13694847062291,0.162964976442026,0.339490171550376,1.40814148973101,3.68513766371995,10.9500074807566,11.5128852236101,8.82756806994669,7.9727288273559,11.6401981119966,7.86543910635542,10.8791538575514,13.5970115066621,0,0,1.96705709207614,1.37968373152366,40.4587486769236,42.1962071731931,0,3.7870639080656,1.57754109708128,3.90438744296638,4.09304455692318,0.955875191810208,0.445597348164788,1.98153571552183,4.45291771842384,6.13737301613755,6.32460444714438,30.8468463764935,8.94222536812092,6.58842733568844,9.44744364250741,9.56826713240706,0,1.45668381692989,3.62788268357701,1.13163047853539,2.06711325016541,3.3817866273832,4.39328098385976,2.18120237686503,2.13898427030833,2.21225730555071,1.05418608574999,2.06271086496374,16.6815406819356,1.8006109403131,2.06973894052407,4.07240366560025,5.14286677562593,8.74007206250146,11.0247843803421,16.1366423030738,0,0.42366414172764,2.8668691747145,0.98931751764888,4.84393280087717,1.74907482291652,1.67121281604391,0.656563598980245,2.04036585640896,46.5417508046379,0,3.30218988741156,0.555583582109135,0.188368457004691,0,0,0,0.139951452323658,0,0,0.632671987162271,1.62655573701479,2.26811215725783,2.71814784818809,1.9652630737156,0.944050424693745,2.64491058321075,1.83229159388821,1.16653475962614,0,1.69107881605257,4.48549638131936,5.12921320417003,12.250424865675,16.4032975816719,16.2197880471147,21.2416601948815,19.9212708811244,20.7621501962907,10.8712854371703,9.21696020025169,2.52808896502543,13.3798642091508,9.24398614483445,4.93699127315621,4.833720783022,3.17890167650024,2.76449533895928,3.39685912501528,1.51449674922221,2.59103142626999,2.21817607301049,1.26695244961678,1.73181314952593,1.63627663054197,0.906921534460845,0.887943813496259,0,0.167884616364078,4.056981474676,3.94133198447482,3.84618410961257,1.50057865355346,2.50786052017682,19.7663144915973,22.0956113523445,16.0410743763031,20.7942350635862,22.6077231524312,24.9279986138601,22.2757425076496,21.1650965515384,18.1256963593682,17.6038505995619,0.93408612825759,0.798049746802062,2.04880326904961,2.67417388775123,1.25767897576789,1.65459157605013,3.11145418922261,4.12070114477788,3.53011130550997,4.54854981174835,4.05566879824384,3.2066478035633,2.71560371662659,4.1616349063165,3.67587001315925,5.23923060411381,3.94006708212509,4.05109362973781,5.76920261124629,2.64958056241915,3.08582327146874,4.2594193478241,4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| |||
|short_description=p6@Spock2 | |||
}} |
Revision as of 12:29, 4 August 2015
Short description: | p6@Spock2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Spock2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -67bp_to_ENSMUST00000165024_5end |
EntrezGene: | 94214 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.67e-09 | 23 |
neuroblast (sensu Vertebrata) | 3.67e-09 | 23 |
neuron | 2.22e-08 | 33 |
neuronal stem cell | 2.22e-08 | 33 |
neuroblast | 2.22e-08 | 33 |
electrically signaling cell | 2.22e-08 | 33 |
ectodermal cell | 3.28e-08 | 44 |
neurectodermal cell | 3.28e-08 | 44 |
neural cell | 7.25e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.20e-23 | 73 |
nervous system | 3.57e-23 | 75 |
regional part of nervous system | 5.95e-22 | 54 |
neurectoderm | 2.99e-21 | 64 |
neural plate | 2.99e-21 | 64 |
presumptive neural plate | 2.99e-21 | 64 |
ectoderm-derived structure | 1.24e-20 | 95 |
ectoderm | 1.24e-20 | 95 |
presumptive ectoderm | 1.24e-20 | 95 |
neural tube | 2.10e-20 | 52 |
neural rod | 2.10e-20 | 52 |
future spinal cord | 2.10e-20 | 52 |
neural keel | 2.10e-20 | 52 |
ecto-epithelium | 1.16e-19 | 73 |
structure with developmental contribution from neural crest | 1.58e-17 | 92 |
brain | 2.63e-17 | 47 |
future brain | 2.63e-17 | 47 |
regional part of brain | 1.19e-16 | 46 |
pre-chordal neural plate | 8.62e-15 | 49 |
anterior neural tube | 7.41e-14 | 40 |
regional part of forebrain | 3.29e-13 | 39 |
forebrain | 3.29e-13 | 39 |
future forebrain | 3.29e-13 | 39 |
gray matter | 3.50e-13 | 34 |
brain grey matter | 2.28e-10 | 29 |
regional part of telencephalon | 2.28e-10 | 29 |
telencephalon | 2.28e-10 | 29 |
posterior neural tube | 1.77e-07 | 12 |
chordal neural plate | 1.77e-07 | 12 |
occipital lobe | 5.21e-07 | 10 |
visual cortex | 5.21e-07 | 10 |
neocortex | 5.21e-07 | 10 |
anatomical conduit | 5.92e-07 | 122 |
tube | 7.81e-07 | 114 |