FFCP PHASE1:Mm9::chrX:7306999..7307022,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2383|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chrX:7306999..7307022,+|id=chrX:7306999..7307022,+|ontology_enrichment_celltype=CL:0000055!8.40e-09!50;CL:0002319!2.75e-07!43;CL:0000221!4.74e-07!44;CL:0000133!4.74e-07!44|ontology_enrichment_celltype_v019_2=CL:0002319,1.56e-08,43;CL:0000221,4.57e-08,44;CL:0000133,4.57e-08,44;CL:0000117,1.31e-07,23;CL:0000337,1.31e-07,23;CL:0000393,6.10e-07,39;CL:0000211,6.10e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.31e-18!75;UBERON:0001016!1.31e-18!75;UBERON:0001017!6.78e-18!73;UBERON:0005743!6.78e-18!73;UBERON:0001049!6.99e-17!52;UBERON:0005068!6.99e-17!52;UBERON:0006241!6.99e-17!52;UBERON:0007135!6.99e-17!52;UBERON:0000955!4.00e-16!50;UBERON:0006238!4.00e-16!50;UBERON:0002346!6.82e-16!71;UBERON:0003075!6.82e-16!71;UBERON:0007284!6.82e-16!71;UBERON:0000033!1.53e-15!63;UBERON:0002616!1.54e-15!49;UBERON:0004121!2.00e-14!102;UBERON:0000924!2.00e-14!102;UBERON:0006601!2.00e-14!102;UBERON:0003056!7.61e-14!49;UBERON:0003080!3.32e-12!40;UBERON:0002020!9.11e-12!34;UBERON:0002780!1.43e-11!39;UBERON:0001890!1.43e-11!39;UBERON:0006240!1.43e-11!39;UBERON:0002791!3.69e-10!29;UBERON:0003528!3.69e-10!29;UBERON:0001893!3.69e-10!29;UBERON:0000153!3.00e-08!94;UBERON:0000025!8.76e-08!114;UBERON:0000956!1.55e-07!21;UBERON:0001869!1.55e-07!21;UBERON:0000203!1.55e-07!21;UBERON:0007811!2.67e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.69e-21,75;UBERON:0002346,1.27e-20,64;UBERON:0003075,1.27e-20,64;UBERON:0007284,1.27e-20,64;UBERON:0001017,3.97e-20,73;UBERON:0000073,1.62e-19,54;UBERON:0001049,5.22e-19,52;UBERON:0005068,5.22e-19,52;UBERON:0006241,5.22e-19,52;UBERON:0007135,5.22e-19,52;UBERON:0004121,1.23e-18,95;UBERON:0000924,1.23e-18,95;UBERON:0006601,1.23e-18,95;UBERON:0000955,7.60e-17,47;UBERON:0006238,7.60e-17,47;UBERON:0002616,3.65e-16,46;UBERON:0010371,9.53e-16,73;UBERON:0003056,2.20e-15,49;UBERON:0002020,1.17e-13,34;UBERON:0010314,1.44e-13,92;UBERON:0003080,2.07e-13,40;UBERON:0002780,1.14e-12,39;UBERON:0001890,1.14e-12,39;UBERON:0006240,1.14e-12,39;UBERON:0003528,9.71e-12,29;UBERON:0002791,9.71e-12,29;UBERON:0001893,9.71e-12,29;UBERON:0000025,8.38e-09,114;UBERON:0000956,1.10e-08,21;UBERON:0001869,1.10e-08,21;UBERON:0000203,1.10e-08,21;UBERON:0002619,3.13e-07,17;UBERON:0004111,8.19e-07,122|phase1_expression=0.160148847104794,0.348975407639361,0.454999239389536,0,0,0.33575854382378,0.467225281191051,0.645616617207881,0.563154888606667,0.468129052643987,0.34243593645101,0.478632953972018,0.513602189793617,0.611942816932982,0,0.202475267389826,0,0.630924330716475,0.274228867211478,0.84877930359606,1.19060606211498,0.397163804803541,0,1.43993180514066,0.68822784320151,0,0.430761996159075,0.430942465371778,0.380046838912748,0,0,0.635030673459631,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,2.26614272356039,2.83855407414641,2.9367480345869,3.12956537739216,3.48840250208714,3.51497892375155,2.3331587888914,2.51975558925653,1.43752564364972,0,0,1.00828139742739,3.34437266846731,2.29226751951005,2.06268836910977,1.61853168687678,3.1739458756322,2.53532561402472,3.04960078862219,2.66788438833342,0.449949858640699,1.97773272513395,0.7104801149461,2.39680088414724,5.37905627450176,2.17748185847803,2.70011876663381,1.05162480675691,2.28520787523043,1.54607978666129,1.22490799214954,2.1086003624012,0,1.10115880999389,4.59674417106676,2.76491759861238,2.50583946687368,3.20206752608434,1.56274011167028,2.79182999001381,0.56276261003168,3.97275444219706,2.65165726926301,2.42031857358475,1.86399445825301,2.12033341332915,1.96486056277642,0.579728977403356,0,0,0.539703191637817,0.649776417447669,0,0.421333260395256,6.64678258054425,3.37721805983729,3.18005617059306,0.704217098883403,0,0,0,0.865964164044856,0.506719730950197,0.505524445014783,0.34255163915718,0,0.742210695324124,1.04091196059682,0.913396434936424,0.461230994512117,0.452167921657868,0.587943535678524,0.753999547978053,1.48316980640624,1.15679485535929,0,2.10296904931632,0.662524555381181,1.93950101254089,0,4.68449275218475,0.41889341362691,0.255457055208591,0.479260498023681,0.599902730993408,0.254140454146129,5.99162557619291,5.03250663100489,3.76963056338593,5.21472960576829,1.79000820131231,7.06479351502504,2.75810147215188,1.42575109390443,1.11966273549084,0.252722758433675,1.05220927943237,1.17108398666433,1.37941262660084,3.24111833649629,1.80845781402858,1.49680298132921,1.5373646434182,1.68663104207512,2.06962696591213,1.5089759505299,2.08016688184601,1.75951124163949,2.6303487891309,0.556094498451196,2.78601733217733,2.88094990971121,0.398068533636986,0,0.772043721344145,0,0.621377317606506,1.17263029990548,1.2604344302271,1.65721314909647,0.983821158737019,1.07986979021165,1.39520366850245,0,0.467061369468678,0.658239399653922,0.820837320395476,0.729619285912702,1.02339991197733,1.09775057645525,0.134206418760372,3.99550902271842,2.98423375899925,1.98251269790279,0.7933516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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2383 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chrX:7306999..7307022,+ | |||
|description=CAGE_peak_at_chrX:7306999..7307022,+ | |||
|id=chrX:7306999..7307022,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.40e-09!50;CL:0002319!2.75e-07!43;CL:0000221!4.74e-07!44;CL:0000133!4.74e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.56e-08,43;CL:0000221,4.57e-08,44;CL:0000133,4.57e-08,44;CL:0000117,1.31e-07,23;CL:0000337,1.31e-07,23;CL:0000393,6.10e-07,39;CL:0000211,6.10e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.31e-18!75;UBERON:0001016!1.31e-18!75;UBERON:0001017!6.78e-18!73;UBERON:0005743!6.78e-18!73;UBERON:0001049!6.99e-17!52;UBERON:0005068!6.99e-17!52;UBERON:0006241!6.99e-17!52;UBERON:0007135!6.99e-17!52;UBERON:0000955!4.00e-16!50;UBERON:0006238!4.00e-16!50;UBERON:0002346!6.82e-16!71;UBERON:0003075!6.82e-16!71;UBERON:0007284!6.82e-16!71;UBERON:0000033!1.53e-15!63;UBERON:0002616!1.54e-15!49;UBERON:0004121!2.00e-14!102;UBERON:0000924!2.00e-14!102;UBERON:0006601!2.00e-14!102;UBERON:0003056!7.61e-14!49;UBERON:0003080!3.32e-12!40;UBERON:0002020!9.11e-12!34;UBERON:0002780!1.43e-11!39;UBERON:0001890!1.43e-11!39;UBERON:0006240!1.43e-11!39;UBERON:0002791!3.69e-10!29;UBERON:0003528!3.69e-10!29;UBERON:0001893!3.69e-10!29;UBERON:0000153!3.00e-08!94;UBERON:0000025!8.76e-08!114;UBERON:0000956!1.55e-07!21;UBERON:0001869!1.55e-07!21;UBERON:0000203!1.55e-07!21;UBERON:0007811!2.67e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.69e-21,75;UBERON:0002346,1.27e-20,64;UBERON:0003075,1.27e-20,64;UBERON:0007284,1.27e-20,64;UBERON:0001017,3.97e-20,73;UBERON:0000073,1.62e-19,54;UBERON:0001049,5.22e-19,52;UBERON:0005068,5.22e-19,52;UBERON:0006241,5.22e-19,52;UBERON:0007135,5.22e-19,52;UBERON:0004121,1.23e-18,95;UBERON:0000924,1.23e-18,95;UBERON:0006601,1.23e-18,95;UBERON:0000955,7.60e-17,47;UBERON:0006238,7.60e-17,47;UBERON:0002616,3.65e-16,46;UBERON:0010371,9.53e-16,73;UBERON:0003056,2.20e-15,49;UBERON:0002020,1.17e-13,34;UBERON:0010314,1.44e-13,92;UBERON:0003080,2.07e-13,40;UBERON:0002780,1.14e-12,39;UBERON:0001890,1.14e-12,39;UBERON:0006240,1.14e-12,39;UBERON:0003528,9.71e-12,29;UBERON:0002791,9.71e-12,29;UBERON:0001893,9.71e-12,29;UBERON:0000025,8.38e-09,114;UBERON:0000956,1.10e-08,21;UBERON:0001869,1.10e-08,21;UBERON:0000203,1.10e-08,21;UBERON:0002619,3.13e-07,17;UBERON:0004111,8.19e-07,122 | |||
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| |||
|short_description=p@chrX:7306999..7307022,+ | |||
}} |
Latest revision as of 10:41, 6 August 2015
Short description: | p@chrX:7306999..7307022, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chrX:7306999..7307022, + |
Coexpression cluster: | MCL_coexpression_mm9:2383 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.56e-08 | 43 |
ectodermal cell | 4.57e-08 | 44 |
neurectodermal cell | 4.57e-08 | 44 |
CNS neuron (sensu Vertebrata) | 1.31e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.31e-07 | 23 |
electrically responsive cell | 6.10e-07 | 39 |
electrically active cell | 6.10e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.69e-21 | 75 |
neurectoderm | 1.27e-20 | 64 |
neural plate | 1.27e-20 | 64 |
presumptive neural plate | 1.27e-20 | 64 |
central nervous system | 3.97e-20 | 73 |
regional part of nervous system | 1.62e-19 | 54 |
neural tube | 5.22e-19 | 52 |
neural rod | 5.22e-19 | 52 |
future spinal cord | 5.22e-19 | 52 |
neural keel | 5.22e-19 | 52 |
ectoderm-derived structure | 1.23e-18 | 95 |
ectoderm | 1.23e-18 | 95 |
presumptive ectoderm | 1.23e-18 | 95 |
brain | 7.60e-17 | 47 |
future brain | 7.60e-17 | 47 |
regional part of brain | 3.65e-16 | 46 |
ecto-epithelium | 9.53e-16 | 73 |
pre-chordal neural plate | 2.20e-15 | 49 |
gray matter | 1.17e-13 | 34 |
structure with developmental contribution from neural crest | 1.44e-13 | 92 |
anterior neural tube | 2.07e-13 | 40 |
regional part of forebrain | 1.14e-12 | 39 |
forebrain | 1.14e-12 | 39 |
future forebrain | 1.14e-12 | 39 |
brain grey matter | 9.71e-12 | 29 |
regional part of telencephalon | 9.71e-12 | 29 |
telencephalon | 9.71e-12 | 29 |
tube | 8.38e-09 | 114 |
cerebral cortex | 1.10e-08 | 21 |
cerebral hemisphere | 1.10e-08 | 21 |
pallium | 1.10e-08 | 21 |
regional part of cerebral cortex | 3.13e-07 | 17 |
anatomical conduit | 8.19e-07 | 122 |