FFCP PHASE1:Hg19::chrX:48326646..48326667,-: Difference between revisions
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(Created page with "{{FFCP
|id=chrX:48326646..48326667,-
|short_description=p20@SLC38A5
|description=CAGE_peak_20_at_SLC38A5_5end
|association_with_transcript=30bp_to_ENST00000440085_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=92745 | |EntrezGene=92745 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18070 | |HGNC=18070 | ||
|TSSclassifier=strong | |||
|UniProt=C9JNK4 | |UniProt=C9JNK4 | ||
|association_with_transcript=30bp_to_ENST00000440085_5end | |||
|cluster_id=chrX:48326646..48326667,- | |||
|coexpression_cluster_id=C2189 | |||
|description=CAGE_peak_20_at_SLC38A5_5end | |||
|id=chrX:48326646..48326667,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000333;4.83e-17;5!CL:0000123;3.18e-11;2!CL:0000242;3.18e-11;2!CL:0000095;4.17e-10;17!CL:0002319;2.77e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,9.05e-12,41;CL:0000242,3.02e-11,2;CL:0000095,4.17e-10,17;CL:0000123,4.17e-10,17;CL:0000133,2.53e-08,59;CL:0002319,2.77e-07,25;CL:0000221,7.24e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006238;2.97e-08;10!UBERON:0003056;5.73e-08;3 | |||
|ontology_enrichment_disease=DOID:171!2.21e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:171;1.49e-18;10!DOID:169;2.25e-14;6!DOID:3095;8.59e-09;22!DOID:2994;8.59e-09;22!DOID:3093;1.22e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.44e-18,10;DOID:169,2.18e-14,6;DOID:3095,8.47e-09,22;DOID:2994,8.47e-09,22;DOID:3093,1.24e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.62e-09!9;UBERON:0001004!1.17e-08!72;UBERON:0000065!9.79e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;4.83e-17;5!UBERON:0002410;4.83e-17;5!UBERON:0000010;6.63e-10;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,4.64e-17,5;UBERON:0002410,4.64e-17,5;UBERON:0000010,6.48e-10,8;UBERON:0001016,1.03e-07,89;UBERON:0004121,6.38e-07,171;UBERON:0000924,6.38e-07,171;UBERON:0006601,6.38e-07,171 | |||
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| ||
|short_description=p20@SLC38A5 | |||
}} | }} |
Latest revision as of 18:13, 15 September 2015
Short description: | p20@SLC38A5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_SLC38A5_5end |
Coexpression cluster: | C2189_neuroblastoma_medulloblastoma_small_retinoblastoma_parietal_temporal_acute |
Association with transcript: | 30bp_to_ENST00000440085_5end |
EntrezGene: | SLC38A5 |
HGNC: | 18070 |
UniProt: | C9JNK4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 9.05e-12 | 41 |
Merkel cell | 3.02e-11 | 2 |
neuron associated cell | 4.17e-10 | 17 |
neuron associated cell (sensu Vertebrata) | 4.17e-10 | 17 |
neurectodermal cell | 2.53e-08 | 59 |
neural cell | 2.77e-07 | 25 |
ectodermal cell | 7.24e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 4.64e-17 | 5 |
autonomic nervous system | 4.64e-17 | 5 |
peripheral nervous system | 6.48e-10 | 8 |
nervous system | 1.03e-07 | 89 |
ectoderm-derived structure | 6.38e-07 | 171 |
ectoderm | 6.38e-07 | 171 |
presumptive ectoderm | 6.38e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.44e-18 | 10 |
neuroendocrine tumor | 2.18e-14 | 6 |
germ cell and embryonal cancer | 8.47e-09 | 22 |
germ cell cancer | 8.47e-09 | 22 |
nervous system cancer | 1.24e-07 | 11 |