FFCP PHASE1:Hg19::chr20:33735070..33735175,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55741 | |EntrezGene=55741 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15877 | |HGNC=15877 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BV94,B4E1F4 | |UniProt=Q9BV94,B4E1F4 | ||
|association_with_transcript=0bp_to_ENST00000374491,ENST00000374492,ENST00000542871,NM_001145025,NM_018217,NR_026728,uc002xbn.2,uc002xbo.2,uc002xbp.2,uc002xbq.2,uc002xbr.2,uc010zut.1,uc010zuu.1_5end | |association_with_transcript=0bp_to_ENST00000374491,ENST00000374492,ENST00000542871,NM_001145025,NM_018217,NR_026728,uc002xbn.2,uc002xbo.2,uc002xbp.2,uc002xbq.2,uc002xbr.2,uc010zut.1,uc010zuu.1_5end | ||
|cluster_id=chr20:33735070..33735175,- | |||
|description=CAGE_peak_2_at_EDEM2_5end | |description=CAGE_peak_2_at_EDEM2_5end | ||
|id=chr20:33735070..33735175,- | |id=chr20:33735070..33735175,- | ||
|ontology_enrichment_celltype=CL:0000144!2.99e-17!625;CL:0000003!9.86e-15!722;CL:0000222!5.47e-14!119;CL:0002371!1.06e-13!591;CL:0000213!1.69e-13!57;CL:0000215!1.69e-13!57;CL:0000012!2.47e-13!682;CL:0000548!3.54e-13!679;CL:0000004!3.54e-13!679;CL:0000255!3.54e-13!679;CL:0000063!2.15e-11!578;CL:0002078!8.45e-11!44;CL:0000115!2.07e-10!35;CL:0000766!2.80e-07!76;CL:0000048!4.11e-07!430 | |ontology_enrichment_celltype=CL:0000144!2.99e-17!625;CL:0000003!9.86e-15!722;CL:0000222!5.47e-14!119;CL:0002371!1.06e-13!591;CL:0000213!1.69e-13!57;CL:0000215!1.69e-13!57;CL:0000012!2.47e-13!682;CL:0000548!3.54e-13!679;CL:0000004!3.54e-13!679;CL:0000255!3.54e-13!679;CL:0000063!2.15e-11!578;CL:0002078!8.45e-11!44;CL:0000115!2.07e-10!35;CL:0000766!2.80e-07!76;CL:0000048!4.11e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000115;2.09e-09;36!CL:0002078;9.57e-08;45!CL:0000213;1.06e-07;58!CL:0000215;1.06e-07;58!CL:1000449;3.89e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.09e-14,121;CL:0000213,5.08e-14,58;CL:0000215,5.08e-14,58;CL:0002078,2.58e-11,45;CL:0000115,6.01e-11,36;CL:0000766,1.74e-07,72;CL:1000449,4.22e-07,15;CL:0000048,8.00e-07,427 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.25e-15!216;UBERON:0003914!1.33e-09!118;UBERON:0001009!2.49e-09!113;UBERON:0000926!4.06e-09!448;UBERON:0004120!4.06e-09!448;UBERON:0006603!4.06e-09!448;UBERON:0004535!6.05e-09!110;UBERON:0002405!9.33e-09!115;UBERON:0002193!1.69e-08!112;UBERON:0000055!7.10e-08!69;UBERON:0002049!7.51e-08!79;UBERON:0007798!7.51e-08!79 | |||
|ontology_enrichment_uberon_v019=UBERON:0000353;2.58e-07;15!UBERON:0006555;3.89e-07;15!UBERON:0004819;3.89e-07;15!UBERON:0001285;3.89e-07;15!UBERON:0007684;3.89e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,5.99e-14,203;UBERON:0000926,1.05e-10,315;UBERON:0004120,1.05e-10,315;UBERON:0006603,1.05e-10,315;UBERON:0003914,7.68e-10,117;UBERON:0001009,3.11e-09,112;UBERON:0004535,7.52e-09,109;UBERON:0002193,1.21e-08,108;UBERON:0000055,8.74e-08,68;UBERON:0002049,9.27e-08,78;UBERON:0007798,9.27e-08,78;UBERON:0002405,1.53e-07,93;UBERON:0006555,2.56e-07,16;UBERON:0004819,2.56e-07,16;UBERON:0000353,2.69e-07,15;UBERON:0004211,4.22e-07,15;UBERON:0009773,4.22e-07,15;UBERON:0001231,4.22e-07,15;UBERON:0001285,4.22e-07,15;UBERON:0007684,4.22e-07,15;UBERON:0004208,4.22e-07,15 | |||
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| ||
|short_description=p2@EDEM2 | |short_description=p2@EDEM2 | ||
}} | }} |
Latest revision as of 19:09, 15 September 2015
Short description: | p2@EDEM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_EDEM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000374491, ENST00000374492, ENST00000542871, NM_001145025, NM_018217, NR_026728, uc002xbn.2, uc002xbo.2, uc002xbp.2, uc002xbq.2, uc002xbr.2, uc010zut.1, uc010zuu.1_5end |
EntrezGene: | EDEM2 |
HGNC: | 15877 |
UniProt: | Q9BV94B4E1F4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.09e-14 | 121 |
lining cell | 5.08e-14 | 58 |
barrier cell | 5.08e-14 | 58 |
meso-epithelial cell | 2.58e-11 | 45 |
endothelial cell | 6.01e-11 | 36 |
myeloid leukocyte | 1.74e-07 | 72 |
epithelial cell of nephron | 4.22e-07 | 15 |
multi fate stem cell | 8.00e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 5.99e-14 | 203 |
mesoderm | 1.05e-10 | 315 |
mesoderm-derived structure | 1.05e-10 | 315 |
presumptive mesoderm | 1.05e-10 | 315 |
epithelial tube | 7.68e-10 | 117 |
circulatory system | 3.11e-09 | 112 |
cardiovascular system | 7.52e-09 | 109 |
hemolymphoid system | 1.21e-08 | 108 |
vessel | 8.74e-08 | 68 |
vasculature | 9.27e-08 | 78 |
vascular system | 9.27e-08 | 78 |
immune system | 1.53e-07 | 93 |
excretory tube | 2.56e-07 | 16 |
kidney epithelium | 2.56e-07 | 16 |
parenchyma | 2.69e-07 | 15 |
nephron epithelium | 4.22e-07 | 15 |
renal tubule | 4.22e-07 | 15 |
nephron tubule | 4.22e-07 | 15 |
nephron | 4.22e-07 | 15 |
uriniferous tubule | 4.22e-07 | 15 |
nephrogenic mesenchyme | 4.22e-07 | 15 |