FFCP PHASE2:Hg19::chr1:110453427..110453449,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:1435 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:2432 |TSSclass...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1435 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=2432 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=E9PJA2 | ||
|association_with_transcript=-42bp_to_ENST00000488198_5end | |association_with_transcript=-42bp_to_ENST00000488198_5end | ||
|cluster_id=chr1:110453427..110453449,+ | |cluster_id=chr1:110453427..110453449,+ | ||
Latest revision as of 23:12, 15 September 2015
| Short description: | p2@CSF1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_CSF1_5end |
| Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
| Association with transcript: | -42bp_to_ENST00000488198_5end |
| EntrezGene: | CSF1 |
| HGNC: | 2432 |
| UniProt: | E9PJA2 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@CSF1 |
|---|
0
10
20
30
40
50
60
70
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| fibroblast | 5.01e-12 | 76 |
| muscle precursor cell | 1.84e-10 | 58 |
| myoblast | 1.84e-10 | 58 |
| multi-potent skeletal muscle stem cell | 1.84e-10 | 58 |
| mesodermal cell | 1.16e-09 | 121 |
| muscle cell | 2.68e-09 | 55 |
| smooth muscle cell | 2.32e-08 | 43 |
| smooth muscle myoblast | 2.32e-08 | 43 |
| multi fate stem cell | 1.17e-07 | 427 |
| electrically responsive cell | 1.88e-07 | 61 |
Showing 1 to 10 of 12 entries
| Ontology term | p-value | n |
|---|---|---|
| somite | 1.86e-09 | 71 |
| presomitic mesoderm | 1.86e-09 | 71 |
| presumptive segmental plate | 1.86e-09 | 71 |
| dermomyotome | 1.86e-09 | 71 |
| trunk paraxial mesoderm | 1.86e-09 | 71 |
| epithelial vesicle | 2.02e-09 | 78 |
| skeletal muscle tissue | 4.40e-09 | 62 |
| striated muscle tissue | 4.40e-09 | 62 |
| myotome | 4.40e-09 | 62 |
| paraxial mesoderm | 4.60e-09 | 72 |
Showing 1 to 10 of 19 entries
