FFCP PHASE1:Hg19::chr17:48262983..48262995,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:48262983..48262995,-
|short_description=p31@COL1A1
|description=CAGE_peak_31_at_COL1A1_5end
|association_with_transcript=-43bp_to_M32790,M32798_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt=P02452 | |UniProt=P02452 | ||
|association_with_transcript=-43bp_to_M32790,M32798_5end | |||
|cluster_id=chr17:48262983..48262995,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_31_at_COL1A1_5end | |||
|id=chr17:48262983..48262995,- | |||
|ontology_enrichment_celltype=CL:0000055!5.11e-37!180;CL:0000057!4.55e-25!75;CL:0000183!1.70e-13!59;CL:0000680!3.73e-13!57;CL:0000056!3.73e-13!57;CL:0000355!3.73e-13!57;CL:0000187!1.57e-12!54;CL:0000048!1.27e-11!430;CL:0000723!3.96e-11!436;CL:0000393!1.00e-10!60;CL:0000211!1.00e-10!60;CL:0000034!1.33e-10!444;CL:0000192!1.07e-08!42;CL:0000514!1.07e-08!42;CL:0002334!1.30e-08!12;CL:0002620!3.85e-08!23;CL:0002371!9.69e-08!591;CL:0000144!3.44e-07!625;CL:0000499!4.34e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.01e-11;55!CL:0000723;1.08e-10;61!CL:0002334;2.00e-10;12!CL:0000048;2.25e-10;58!CL:0002320;1.52e-09;188!CL:0000057;2.81e-09;73!CL:0002570;7.81e-08;8!CL:0000034;1.64e-07;69!CL:0000499;1.67e-07;28!CL:0002620;2.39e-07;23!CL:0000187;2.64e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.72e-23,76;CL:0000048,3.72e-17,427;CL:0000723,3.01e-16,433;CL:0000034,4.33e-15,441;CL:0000680,8.10e-11,58;CL:0000056,8.10e-11,58;CL:0000355,8.10e-11,58;CL:0000187,1.19e-10,55;CL:0002334,1.70e-10,12;CL:0002320,2.95e-10,361;CL:0000134,3.30e-09,354;CL:0000393,1.44e-08,61;CL:0000211,1.44e-08,61;CL:0002570,7.25e-08,8;CL:0000499,1.60e-07,28;CL:0002620,1.88e-07,23;CL:0000192,2.79e-07,43;CL:0000514,2.79e-07,43;CL:0000219,3.49e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000355;9.67e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.28e-15!83;UBERON:0002329!2.28e-15!83;UBERON:0003077!2.28e-15!83;UBERON:0003059!2.28e-15!83;UBERON:0007282!2.28e-15!83;UBERON:0009618!2.28e-15!83;UBERON:0007285!2.28e-15!83;UBERON:0004290!9.37e-14!70;UBERON:0001134!2.43e-13!61;UBERON:0002036!2.43e-13!61;UBERON:0003082!2.43e-13!61;UBERON:0002385!7.53e-13!63;UBERON:0001015!7.53e-13!63;UBERON:0000383!7.53e-13!63;UBERON:0005256!9.84e-12!143;UBERON:0000486!6.42e-11!82;UBERON:0000475!6.10e-09!365;UBERON:0003102!1.39e-08!95;UBERON:0002199!2.68e-08!45;UBERON:0002416!2.68e-08!45;UBERON:0002100!5.20e-08!216;UBERON:0001013!6.89e-08!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.05e-09;14!UBERON:0002384;1.08e-09;198!UBERON:0004457;7.94e-07;9!UBERON:0000042;7.94e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.20e-11,62;UBERON:0002036,2.20e-11,62;UBERON:0003082,2.20e-11,62;UBERON:0007524,3.07e-11,73;UBERON:0002329,5.99e-11,71;UBERON:0003059,5.99e-11,71;UBERON:0007282,5.99e-11,71;UBERON:0004290,5.99e-11,71;UBERON:0009618,5.99e-11,71;UBERON:0002384,9.77e-11,371;UBERON:0002385,1.19e-10,64;UBERON:0001015,1.19e-10,64;UBERON:0000383,1.19e-10,64;UBERON:0003077,1.28e-10,72;UBERON:0007285,1.28e-10,72;UBERON:0007503,1.53e-10,78;UBERON:0001013,8.65e-10,14;UBERON:0002199,2.27e-09,46;UBERON:0002416,2.27e-09,46;UBERON:0005256,3.18e-09,122;UBERON:0000486,5.91e-09,83;UBERON:0003104,7.32e-09,160;UBERON:0009142,7.32e-09,160;UBERON:0003102,5.24e-07,99;UBERON:0002097,6.46e-07,41 | |||
|phase1_expression=7.99384868790449,9.63452357509424,11.5582611358696,4.00293193412522,8.49226079411847,5.23403114460221,40.5279805069297,5.68547886084148,1.56711376919903,0,0,0.655324116390517,5.01157258634062,1.73272894144065,0.994192127183747,2.6893005858071,0.602694528023977,2.19093027116212,1.46379839637152,0.861847406537515,1.22400414746552,3.44800193625897,0.572471974262113,0.273748850145768,1.50651167513763,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1903433156981,8.04841031644363,3.70801429346238,5.06014813338393,6.51739283826656,13.6155727823174,19.0868627292264,4.86634870302636,1.32348744029695,1.99556457716308,2.3715392137144,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.35768172968,6.58478660655815,1.32409180813219,21.7995831769098,6.02936249737207,3.92474320099615,1.06748995729705,21.9534118091272,0.622422070799533,0.942974704487816,0.326923806226917,4.54072282934794,7.49028701823999,0.468642863667593,0,0,1.64393548606981,0.352303495931295,0.323745888736263,0.280901613404497,1.02077085627447,0.982674538494144,0.826606249406124,14.2560342873846,17.5559519787775,2.73048408581408,10.0606539854273,1.0100166837244,1.12606667884768,0.277064115484183,6.14568669233173,7.66219489497549,8.11285518095623,3.28953331164061,8.79009214875424,12.5998859402955,8.68920794754204,9.30282397861647,3.60683852334536,9.27505944164265,5.21127197728451,9.78902726999344,5.26159827870473,6.81571190459109,7.36399189138395,2.7479829659198,15.2654124782144,1.71278566986988,2.37384829234683,0.193260853163297,0,0,0.121973706129595,0,0.116193942869518,0.207322110030741,0,0,1.56449532329816,6.43240938192885,1.38134921352481,5.10804720835177,5.77503585335668,0.118306800039844,0,0,0,0,0,0,0,0,0,5.60967095213783,9.0546282492908,7.3504355692771,0,0,1.77236972004421,0,0.122988438543114,2.57351715447788,0.109750285408626,0,0,0.0925884451585296,0.651616610620649,4.15973914111831,0,0.463721619900307,1.40890433082986,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.897048674762886,0.43596006883328,2.3468251462704,6.59285750364667,14.3062578340753,9.298330278116,7.97814349754611,7.28052058379563,3.08648849114571,0,2.39779961114489,16.1565132833707,34.7277827450524,4.11620168390384,4.23457039581856,6.04166312862328,1.58390374586686,1.20575750823834,0,1.09970290300263,0,0,0,8.62649479769697,16.0806710167759,1.42636905040718,1.01346914667305,2.05476322550383,0.895304816199478,0,0,0,0,0.254094624222463,1.30139853857622,0,0,0,0,0,0,2.08575535922538,3.00102312635806,0.542530047399471,27.8680954451282,47.9973979864365,18.1357777289025,8.43418187947535,4.21324539618807,2.27407504055985,4.1389228517002,11.2918351751024,3.13427586520895,3.64911180765948,5.48243240895674,7.54915532383883,0,0,0,0.909382714338778,13.3148351608398,7.86214762657169,14.8864684691266,9.821566290436,24.9787484045435,14.7360021644056,9.21073048320066,43.2697047876304,4.45254199334973,3.85524234506639,13.4946911237977,3.77784917663522,3.63478100428535,3.25389059687886,0,0,0,5.51109351190112,7.28364672026868,9.30983346211911,0,0,0,1.46139224653261,0.105551628892876,0,0,0.647747748306418,1.54227252690289,1.08378575017541,3.01013864312912,0,0,0.223874754722178,0,0,0,0,0.325378394664303,0.206082023295445,1.73981983154852,0.907604499126468,1.14853107599234,0,9.64103579064957,2.61010939388729,0.462145851343933,1.22802939780904,0.275673144969061,3.11518710117994,2.61030049045611,1.53407929348982,18.7857595214616,0.330569830721956,0.192190067365106,0,0,5.11330104227014,28.018298867927,0,1.84820148105653,0.532306030317022,0.869932992075073,1.29726953372744,0,1.116475108079,1.58189712359363,6.48142659341004,1.79128453917934,5.13526785640705,0.95460974377781,3.13979456079692,4.8565563547495,7.68703683260953,4.12343408209902,0.404364963146632,1.58510321173008,0,4.38870365180631,1.70599442741899,0,2.45699840534374,13.9991377634176,2.26016233240486,1.65409603063837,2.65375590096488,0,4.6302042741335,2.62357900818653,1.01455188481352,0,0.845086807596724,3.29846110069318,4.12645972255109,0.7133421029625,0.354761064070598,6.96655196482292,7.90307743103764,1.51789269506286,3.84928192269481,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.597743964753209,0.828851746593443,0,0.102268682502155,0,12.1305439188105,0,0.179021174675609,0,0.887790650732402,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.347249989866585,0,0,0,0.110579259931225,0,0,0,0,3.00106008164809,0.113942055847001,0,0,0,0,2.28993983504656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.27721101453538,0,0,0,0,31.3005282446528,0,0,0,0,0,3.62972148145992,0,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,2.09672001890436,0,0,0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| ||
|short_description=p31@COL1A1 | |||
}} | }} |
Latest revision as of 23:38, 15 September 2015
Short description: | p31@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_31_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -43bp_to_M32790, M32798_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.72e-23 | 76 |
multi fate stem cell | 3.72e-17 | 427 |
somatic stem cell | 3.01e-16 | 433 |
stem cell | 4.33e-15 | 441 |
muscle precursor cell | 8.10e-11 | 58 |
myoblast | 8.10e-11 | 58 |
multi-potent skeletal muscle stem cell | 8.10e-11 | 58 |
muscle cell | 1.19e-10 | 55 |
preadipocyte | 1.70e-10 | 12 |
connective tissue cell | 2.95e-10 | 361 |
mesenchymal cell | 3.30e-09 | 354 |
electrically responsive cell | 1.44e-08 | 61 |
electrically active cell | 1.44e-08 | 61 |
mesenchymal stem cell of adipose | 7.25e-08 | 8 |
stromal cell | 1.60e-07 | 28 |
skin fibroblast | 1.88e-07 | 23 |
smooth muscle cell | 2.79e-07 | 43 |
smooth muscle myoblast | 2.79e-07 | 43 |
motile cell | 3.49e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 2.20e-11 | 62 |
striated muscle tissue | 2.20e-11 | 62 |
myotome | 2.20e-11 | 62 |
dense mesenchyme tissue | 3.07e-11 | 73 |
somite | 5.99e-11 | 71 |
presomitic mesoderm | 5.99e-11 | 71 |
presumptive segmental plate | 5.99e-11 | 71 |
dermomyotome | 5.99e-11 | 71 |
trunk paraxial mesoderm | 5.99e-11 | 71 |
connective tissue | 9.77e-11 | 371 |
muscle tissue | 1.19e-10 | 64 |
musculature | 1.19e-10 | 64 |
musculature of body | 1.19e-10 | 64 |
paraxial mesoderm | 1.28e-10 | 72 |
presumptive paraxial mesoderm | 1.28e-10 | 72 |
epithelial vesicle | 1.53e-10 | 78 |
adipose tissue | 8.65e-10 | 14 |
integument | 2.27e-09 | 46 |
integumental system | 2.27e-09 | 46 |
trunk mesenchyme | 3.18e-09 | 122 |
multilaminar epithelium | 5.91e-09 | 83 |
mesenchyme | 7.32e-09 | 160 |
entire embryonic mesenchyme | 7.32e-09 | 160 |
surface structure | 5.24e-07 | 99 |
skin of body | 6.46e-07 | 41 |