FFCP PHASE1:Hg19::chr9:132641624..132641647,+: Difference between revisions
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|id=chr9:132641624..132641647,+
|short_description=p6@USP20
|description=CAGE_peak_6_at_USP20_5end
|association_with_transcript=-4bp_to_ENST00000472108_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10868 | |EntrezGene=10868 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12619 | |HGNC=12619 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000472108_5end | |||
|cluster_id=chr9:132641624..132641647,+ | |||
|coexpression_cluster_id=C2703 | |||
|description=CAGE_peak_6_at_USP20_5end | |||
|id=chr9:132641624..132641647,+ | |||
|ontology_enrichment_celltype=CL:0000763!1.76e-22!112;CL:0000049!1.76e-22!112;CL:0002274!3.25e-22!5;CL:0000457!3.25e-22!5;CL:0002191!3.25e-22!5;CL:0000097!3.25e-22!5;CL:0000831!3.25e-22!5;CL:0002028!3.25e-22!5;CL:0000037!7.13e-15!172;CL:0000566!7.13e-15!172;CL:0000988!1.07e-13!182;CL:0002032!2.73e-13!165;CL:0000837!2.73e-13!165;CL:0000163!3.10e-12!9;CL:0000764!1.06e-10!2;CL:0000765!1.06e-10!2;CL:0000050!1.06e-10!2;CL:0000038!1.06e-10!2;CL:0000558!1.06e-10!2;CL:0000547!1.06e-10!2;CL:0000549!1.06e-10!2;CL:0000550!1.06e-10!2;CL:0000552!1.06e-10!2 | |||
|ontology_enrichment_celltype_v019=CL:0000764;6.44e-20;2!CL:0000558;6.44e-20;2!CL:0000097;4.50e-17;5!CL:0000163;9.86e-10;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,6.44e-20,2;CL:0000765,6.44e-20,2;CL:0000050,6.44e-20,2;CL:0000038,6.44e-20,2;CL:0000558,6.44e-20,2;CL:0000547,6.44e-20,2;CL:0000549,6.44e-20,2;CL:0000550,6.44e-20,2;CL:0000552,6.44e-20,2;CL:0000097,5.02e-17,5;CL:0002028,5.02e-17,5;CL:0000763,2.62e-16,108;CL:0000049,2.62e-16,108;CL:0002032,3.78e-10,161;CL:0000837,3.78e-10,161;CL:0000163,1.05e-09,9;CL:0000037,1.27e-09,168;CL:0000988,5.23e-09,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!2.48e-33!31;DOID:1036!1.10e-26!8;DOID:1240!1.02e-25!39;DOID:2531!8.80e-19!51;DOID:0060083!8.80e-19!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.80e-27;31!DOID:1036;2.88e-18;8!DOID:1240;3.55e-18;39!DOID:2531;7.43e-13;51!DOID:0060083;7.43e-13;51!DOID:8552;1.37e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.24e-27,31;DOID:1240,1.13e-21,39;DOID:1036,2.75e-18,8;DOID:2531,3.11e-16,51;DOID:0060083,3.11e-16,51;DOID:8552,1.43e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.63e-22!15;UBERON:0000179!1.63e-22!15;UBERON:0000463!1.63e-22!15;UBERON:0002390!2.24e-07!102;UBERON:0003061!2.24e-07!102;UBERON:0002193!2.26e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.30e-21;15!UBERON:0000179;3.30e-21;15!UBERON:0000463;3.30e-21;15!UBERON:0002390;6.68e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.49e-21,15;UBERON:0000179,3.49e-21,15;UBERON:0000463,3.49e-21,15 | |||
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| ||
|short_description=p6@USP20 | |||
}} | }} |
Latest revision as of 23:45, 15 September 2015
Short description: | p6@USP20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_USP20_5end |
Coexpression cluster: | C2703_Reticulocytes_acute_chronic_Whole_blood_liver_CD34 |
Association with transcript: | -4bp_to_ENST00000472108_5end |
EntrezGene: | USP20 |
HGNC: | 12619 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 6.44e-20 | 2 |
erythroblast | 6.44e-20 | 2 |
megakaryocyte-erythroid progenitor cell | 6.44e-20 | 2 |
erythroid progenitor cell | 6.44e-20 | 2 |
reticulocyte | 6.44e-20 | 2 |
proerythroblast | 6.44e-20 | 2 |
basophilic erythroblast | 6.44e-20 | 2 |
polychromatophilic erythroblast | 6.44e-20 | 2 |
orthochromatic erythroblast | 6.44e-20 | 2 |
mast cell | 5.02e-17 | 5 |
basophil mast progenitor cell | 5.02e-17 | 5 |
myeloid cell | 2.62e-16 | 108 |
common myeloid progenitor | 2.62e-16 | 108 |
hematopoietic oligopotent progenitor cell | 3.78e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.78e-10 | 161 |
endocrine cell | 1.05e-09 | 9 |
hematopoietic stem cell | 1.27e-09 | 168 |
hematopoietic cell | 5.23e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 3.49e-21 | 15 |
haemolymphatic fluid | 3.49e-21 | 15 |
organism substance | 3.49e-21 | 15 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.24e-27 | 31 |
leukemia | 1.13e-21 | 39 |
chronic leukemia | 2.75e-18 | 8 |
hematologic cancer | 3.11e-16 | 51 |
immune system cancer | 3.11e-16 | 51 |
chronic myeloid leukemia | 1.43e-10 | 1 |