FFCP PHASE1:Hg19::chr17:48266783..48266900,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt=P02452 | |UniProt=P02452 | ||
|association_with_transcript=-210bp_to_J00112_5end | |association_with_transcript=-210bp_to_J00112_5end | ||
|cluster_id=chr17:48266783..48266900,- | |||
|coexpression_cluster_id=C59 | |coexpression_cluster_id=C59 | ||
|description=CAGE_peak_13_at_COL1A1_5end | |description=CAGE_peak_13_at_COL1A1_5end | ||
|id=chr17:48266783..48266900,- | |id=chr17:48266783..48266900,- | ||
|ontology_enrichment_celltype=CL:0000055!4.14e-42!180;CL:0000057!1.25e-24!75;CL:0000183!4.61e-17!59;CL:0000680!9.33e-17!57;CL:0000056!9.33e-17!57;CL:0000355!9.33e-17!57;CL:0000187!5.25e-16!54;CL:0000393!2.55e-14!60;CL:0000211!2.55e-14!60;CL:0000192!4.69e-13!42;CL:0000514!4.69e-13!42;CL:0000048!6.37e-10!430;CL:0000359!4.51e-09!32;CL:0000723!6.18e-09!436;CL:0002620!8.48e-09!23;CL:0000034!1.81e-08!444;CL:0000499!6.72e-08!27;CL:0002334!1.00e-07!12;CL:0000222!1.10e-07!119;CL:0002494!6.16e-07!16 | |ontology_enrichment_celltype=CL:0000055!4.14e-42!180;CL:0000057!1.25e-24!75;CL:0000183!4.61e-17!59;CL:0000680!9.33e-17!57;CL:0000056!9.33e-17!57;CL:0000355!9.33e-17!57;CL:0000187!5.25e-16!54;CL:0000393!2.55e-14!60;CL:0000211!2.55e-14!60;CL:0000192!4.69e-13!42;CL:0000514!4.69e-13!42;CL:0000048!6.37e-10!430;CL:0000359!4.51e-09!32;CL:0000723!6.18e-09!436;CL:0002620!8.48e-09!23;CL:0000034!1.81e-08!444;CL:0000499!6.72e-08!27;CL:0002334!1.00e-07!12;CL:0000222!1.10e-07!119;CL:0002494!6.16e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000057;4.11e-11;73!CL:0000192;6.36e-11;43!CL:0000187;9.13e-11;55!CL:0000134;2.14e-10;55!CL:0002320;8.11e-10;188!CL:0000359;9.01e-10;32!CL:0000723;1.43e-09;61!CL:0000048;1.80e-09;58!CL:0002620;2.59e-09;23!CL:0000393;9.70e-09;61!CL:0000211;9.70e-09;61!CL:0002334;1.21e-08;12!CL:0000499;6.39e-08;28!CL:0002494;9.72e-08;16!CL:0000034;5.08e-07;69!CL:0000327;5.75e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.40e-28,76;CL:0000680,1.20e-19,58;CL:0000056,1.20e-19,58;CL:0000355,1.20e-19,58;CL:0000187,8.98e-19,55;CL:0000048,1.67e-17,427;CL:0000723,2.13e-16,433;CL:0000192,3.34e-15,43;CL:0000514,3.34e-15,43;CL:0000393,4.10e-15,61;CL:0000211,4.10e-15,61;CL:0000034,5.41e-15,441;CL:0000359,2.83e-10,32;CL:0002620,2.89e-09,23;CL:0000222,4.55e-09,121;CL:0002334,1.03e-08,12;CL:0002320,4.74e-08,361;CL:0000499,6.32e-08,28;CL:0002494,8.42e-08,16;CL:0000327,5.60e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;6.36e-11;43!CL:0000355;7.46e-11;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.23e-20!83;UBERON:0002329!4.23e-20!83;UBERON:0003077!4.23e-20!83;UBERON:0003059!4.23e-20!83;UBERON:0007282!4.23e-20!83;UBERON:0009618!4.23e-20!83;UBERON:0007285!4.23e-20!83;UBERON:0004290!2.65e-18!70;UBERON:0001134!3.24e-17!61;UBERON:0002036!3.24e-17!61;UBERON:0003082!3.24e-17!61;UBERON:0002385!3.57e-17!63;UBERON:0001015!3.57e-17!63;UBERON:0000383!3.57e-17!63;UBERON:0005256!2.67e-15!143;UBERON:0000486!1.57e-14!82;UBERON:0002100!3.19e-10!216;UBERON:0000475!5.71e-09!365;UBERON:0004872!1.90e-08!84;UBERON:0001013!1.07e-07!14;UBERON:0002199!2.04e-07!45;UBERON:0002416!2.04e-07!45;UBERON:0000481!4.70e-07!347;UBERON:0000948!4.80e-07!24;UBERON:0005498!4.80e-07!24;UBERON:0004140!4.80e-07!24;UBERON:0009881!4.80e-07!24;UBERON:0004141!4.80e-07!24;UBERON:0003084!4.80e-07!24;UBERON:0007005!4.80e-07!24;UBERON:0004139!4.80e-07!24;UBERON:0004291!4.80e-07!24;UBERON:0000490!7.05e-07!138;UBERON:0003104!8.02e-07!238;UBERON:0009142!8.02e-07!238 | |ontology_enrichment_uberon=UBERON:0000914!4.23e-20!83;UBERON:0002329!4.23e-20!83;UBERON:0003077!4.23e-20!83;UBERON:0003059!4.23e-20!83;UBERON:0007282!4.23e-20!83;UBERON:0009618!4.23e-20!83;UBERON:0007285!4.23e-20!83;UBERON:0004290!2.65e-18!70;UBERON:0001134!3.24e-17!61;UBERON:0002036!3.24e-17!61;UBERON:0003082!3.24e-17!61;UBERON:0002385!3.57e-17!63;UBERON:0001015!3.57e-17!63;UBERON:0000383!3.57e-17!63;UBERON:0005256!2.67e-15!143;UBERON:0000486!1.57e-14!82;UBERON:0002100!3.19e-10!216;UBERON:0000475!5.71e-09!365;UBERON:0004872!1.90e-08!84;UBERON:0001013!1.07e-07!14;UBERON:0002199!2.04e-07!45;UBERON:0002416!2.04e-07!45;UBERON:0000481!4.70e-07!347;UBERON:0000948!4.80e-07!24;UBERON:0005498!4.80e-07!24;UBERON:0004140!4.80e-07!24;UBERON:0009881!4.80e-07!24;UBERON:0004141!4.80e-07!24;UBERON:0003084!4.80e-07!24;UBERON:0007005!4.80e-07!24;UBERON:0004139!4.80e-07!24;UBERON:0004291!4.80e-07!24;UBERON:0000490!7.05e-07!138;UBERON:0003104!8.02e-07!238;UBERON:0009142!8.02e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.22e-09;198!UBERON:0001013;5.73e-08;14!UBERON:0002385;1.19e-07;31!UBERON:0001015;1.19e-07;31!UBERON:0000383;1.19e-07;31!UBERON:0002204;6.83e-07;70 | |||
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|phase1_expression=44.3295245420158,42.3919037304147,64.8390258841467,42.0307853083148,61.6806310309657,34.8935409640147,70.923965887127,7.58063848112197,3.13422753839806,0.491467873003018,1.39560233594486,3.27662058195258,24.2665619970177,6.68338305984252,6.95934489028623,3.36162573225888,1.80808358407193,2.92124036154949,3.90346239032406,8.74159512345194,14.484049078342,17.866919124251,0.286235987131057,0.547497700291537,2.63639543149086,0.152826811495903,0.328402357799783,0.0787107813136792,0,0,0.77408061658038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.2568239576754,11.4019146149618,10.356867509326,23.8549840573814,33.5896400126046,30.1280759438513,31.0161519349929,44.2837731975399,2.45790524626576,6.43015252641436,7.37812199822259,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.183201743930407,0,0,0,92.9337549670246,30.13806177617,9.00382429529888,103.548020090322,25.8907919004801,15.1382952038423,22.417289103238,49.5801772318491,4.97937656639626,6.60082293141472,5.88462851208451,25.1253329890586,11.5235184896,3.04617861383936,1.24864030732128,1.71141546463335,2.54062756938062,0.939475989150119,1.29498355494505,1.40450806702248,3.26646674007829,3.19369225010597,5.06296327761251,110.484265727231,102.615775650601,30.9454863058929,43.8357066507905,3.03005005117319,4.25402967564678,2.21651292387346,14.0472838681868,30.3422917841029,46.1230840843252,5.78504134116107,15.9656775763087,49.5453142059076,32.8494446797321,26.107925359343,20.3013482599725,18.2924783432397,25.3118924610962,33.2489374515295,20.8515191044965,13.8838575834263,28.2593188831859,27.6414757160168,28.0457578088125,11.6872433944063,9.15627198476633,0,0.818238361772504,0,0.121973706129595,0,0.464775771478074,0.414644220061482,0.504641701751257,0.36497735907583,4.69348596989448,12.2215778256648,8.28809528114883,2.3218396401599,10.8281922250438,0.236613600079688,0.168584690078102,0,0.220587945464788,0,0,0.134831308160164,0,0,0,16.8290128564135,46.9194372917796,70.5641814650601,0,0,1.77236972004421,0,0,4.46076306776166,0,0,0,0,3.25808305310325,4.15973914111831,1.44331342025273,0.811512834825538,8.21860859650752,0.288732895522148,0.462985512576611,0,0,0,0,0,0,0,2.68771405118175,0.141775097242386,0,0,0,0,0,0.207328115540772,0.144119953416961,0.25248486685276,0,0,0,1.71072446022705,0.719792448923265,0,0,3.92458795208763,10.0270815831654,4.62031200671985,24.9494411412511,64.3781602533388,15.215449546008,26.593811658487,21.8415617513869,7.45901385360212,1.41849132023278,6.39413229638638,25.8790168521247,96.5866457596769,14.8183260620538,13.3551835560431,22.7450847195229,6.33561498346743,3.31583314765545,2.61460037580088,3.19913571782583,0,0,0,30.6719815029226,78.1061163671975,0,7.52862794671412,8.6300055471161,3.76028022803781,0,0,0,0,1.77866236955724,0,0,0.335032530668698,0,0,0,0,6.37995756939527,9.50323990013386,4.06897535549603,129.773817595224,97.9575148496418,66.5504191443204,24.0139900735062,32.8031248703214,68.2222512167955,27.9377292489763,12.6202863721733,24.3367302475048,8.51459421787212,28.7827701470229,52.8440872668718,0,0,0,1.5156378572313,24.9653159265746,28.1222972796603,86.0934093131156,24.8608396726661,126.858362683749,103.664571747862,48.1004814122701,134.795585918343,40.0728779401476,4.93471020168498,30.8957402044841,6.40591816907711,9.8658341544888,7.66988497835731,0,0.601519410909855,0,25.7184363888719,20.3942108167523,31.0764863453835,0.451199612907412,0,0.784349769176855,0,0.422206515571503,0,0,1.29549549661284,3.08454505380579,4.87703587578935,16.0540727633553,0,0,1.56712328305525,0,0,0,1.96808787419823,0,1.33953315142039,4.76161217055386,2.14524699793529,2.87132768998086,1.95018073810956,35.3504645657151,8.50702320970673,3.85121542786611,6.14014698904518,3.72158745708233,11.0642852214322,17.2569865757932,6.05109054654316,48.1663312848849,0.826424576804891,1.72971060628596,0.127612712494584,0.809262246844399,8.36721988735114,60.4439705914829,6.2733354314454,7.39280592422613,3.19383618190213,4.34966496037536,6.85699610684504,1.86062352764589,8.93180086463202,8.5422444674056,30.1195706399643,12.283093982944,7.27496279657665,6.36406495851874,10.9892809627892,12.4111995732487,28.2773140628136,13.7840510744453,5.0545620393329,12.6808256938407,5.89761838734574,16.5795471290461,6.09283724078211,1.05650146756755,15.1514901662864,46.5223871127715,19.2113798254413,16.5409603063837,5.30751180192976,2.19225442626881,18.520817096534,12.462000288886,7.30477357065735,5.88664646389525,8.73256367849948,4.87598597493775,9.43190793725963,4.63672366925625,4.25713276884717,22.5885169768501,16.1354497550352,7.5894634753143,8.74836800612457,0.0962221127255121,0,0,1.97701981631236,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0.747768497892312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0.284136146806413,0.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| ||
|short_description=p13@COL1A1 | |short_description=p13@COL1A1 | ||
}} | }} |
Latest revision as of 00:24, 16 September 2015
Short description: | p13@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -210bp_to_J00112_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.40e-28 | 76 |
muscle precursor cell | 1.20e-19 | 58 |
myoblast | 1.20e-19 | 58 |
multi-potent skeletal muscle stem cell | 1.20e-19 | 58 |
muscle cell | 8.98e-19 | 55 |
multi fate stem cell | 1.67e-17 | 427 |
somatic stem cell | 2.13e-16 | 433 |
smooth muscle cell | 3.34e-15 | 43 |
smooth muscle myoblast | 3.34e-15 | 43 |
electrically responsive cell | 4.10e-15 | 61 |
electrically active cell | 4.10e-15 | 61 |
stem cell | 5.41e-15 | 441 |
vascular associated smooth muscle cell | 2.83e-10 | 32 |
skin fibroblast | 2.89e-09 | 23 |
mesodermal cell | 4.55e-09 | 121 |
preadipocyte | 1.03e-08 | 12 |
connective tissue cell | 4.74e-08 | 361 |
stromal cell | 6.32e-08 | 28 |
cardiocyte | 8.42e-08 | 16 |
extracellular matrix secreting cell | 5.60e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.58e-20 | 73 |
somite | 1.99e-20 | 71 |
presomitic mesoderm | 1.99e-20 | 71 |
presumptive segmental plate | 1.99e-20 | 71 |
dermomyotome | 1.99e-20 | 71 |
trunk paraxial mesoderm | 1.99e-20 | 71 |
epithelial vesicle | 3.12e-20 | 78 |
paraxial mesoderm | 7.95e-20 | 72 |
presumptive paraxial mesoderm | 7.95e-20 | 72 |
skeletal muscle tissue | 8.99e-20 | 62 |
striated muscle tissue | 8.99e-20 | 62 |
myotome | 8.99e-20 | 62 |
muscle tissue | 3.78e-19 | 64 |
musculature | 3.78e-19 | 64 |
musculature of body | 3.78e-19 | 64 |
trunk mesenchyme | 2.42e-16 | 122 |
multilaminar epithelium | 4.12e-16 | 83 |
mesenchyme | 3.98e-15 | 160 |
entire embryonic mesenchyme | 3.98e-15 | 160 |
integument | 4.04e-09 | 46 |
integumental system | 4.04e-09 | 46 |
mesoderm | 6.04e-09 | 315 |
mesoderm-derived structure | 6.04e-09 | 315 |
presumptive mesoderm | 6.04e-09 | 315 |
trunk | 7.62e-09 | 199 |
splanchnic layer of lateral plate mesoderm | 1.25e-08 | 83 |
connective tissue | 2.21e-08 | 371 |
unilaminar epithelium | 2.62e-08 | 148 |
adipose tissue | 5.92e-08 | 14 |
surface structure | 1.21e-07 | 99 |
skin of body | 2.30e-07 | 41 |