FFCP PHASE1:Hg19::chr17:48268194..48268230,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=54bp_to_ENST00000494334_5end | |association_with_transcript=54bp_to_ENST00000494334_5end | ||
|cluster_id=chr17:48268194..48268230,- | |||
|coexpression_cluster_id=C59 | |coexpression_cluster_id=C59 | ||
|description=CAGE_peak_43_at_COL1A1_5end | |description=CAGE_peak_43_at_COL1A1_5end | ||
|id=chr17:48268194..48268230,- | |id=chr17:48268194..48268230,- | ||
|ontology_enrichment_celltype=CL:0000055!2.77e-36!180;CL:0000057!7.06e-27!75;CL:0000183!8.23e-13!59;CL:0000680!2.19e-12!57;CL:0000056!2.19e-12!57;CL:0000355!2.19e-12!57;CL:0000048!2.41e-12!430;CL:0000723!1.10e-11!436;CL:0000187!1.85e-11!54;CL:0000034!5.07e-11!444;CL:0000393!1.74e-09!60;CL:0000211!1.74e-09!60;CL:0002620!2.17e-09!23;CL:0002334!7.10e-09!12;CL:0000192!1.83e-08!42;CL:0000514!1.83e-08!42;CL:0002371!2.53e-08!591;CL:0000144!4.70e-08!625;CL:0002494!2.39e-07!16;CL:0002320!9.67e-07!365 | |ontology_enrichment_celltype=CL:0000055!2.77e-36!180;CL:0000057!7.06e-27!75;CL:0000183!8.23e-13!59;CL:0000680!2.19e-12!57;CL:0000056!2.19e-12!57;CL:0000355!2.19e-12!57;CL:0000048!2.41e-12!430;CL:0000723!1.10e-11!436;CL:0000187!1.85e-11!54;CL:0000034!5.07e-11!444;CL:0000393!1.74e-09!60;CL:0000211!1.74e-09!60;CL:0002620!2.17e-09!23;CL:0002334!7.10e-09!12;CL:0000192!1.83e-08!42;CL:0000514!1.83e-08!42;CL:0002371!2.53e-08!591;CL:0000144!4.70e-08!625;CL:0002494!2.39e-07!16;CL:0002320!9.67e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0002334;1.01e-09;12!CL:0000134;6.12e-09;55!CL:0000057;7.67e-09;73!CL:0002320;8.34e-09;188!CL:0000499;1.03e-08;28!CL:0000723;2.93e-08;61!CL:0000048;5.06e-08;58!CL:0000327;1.45e-07;15!CL:0002620;3.28e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.10e-23,76;CL:0000048,2.06e-16,427;CL:0000723,1.35e-15,433;CL:0000034,1.50e-14,441;CL:0002320,1.31e-10,361;CL:0002334,7.76e-10,12;CL:0000680,8.67e-10,58;CL:0000056,8.67e-10,58;CL:0000355,8.67e-10,58;CL:0000134,2.54e-09,354;CL:0000499,6.97e-09,28;CL:0000187,9.66e-09,55;CL:0000192,5.82e-08,43;CL:0000514,5.82e-08,43;CL:0000327,8.30e-08,15;CL:0000219,2.11e-07,386;CL:0002620,2.88e-07,23;CL:0000393,4.70e-07,61;CL:0000211,4.70e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.99e-15!83;UBERON:0002329!1.99e-15!83;UBERON:0003077!1.99e-15!83;UBERON:0003059!1.99e-15!83;UBERON:0007282!1.99e-15!83;UBERON:0009618!1.99e-15!83;UBERON:0007285!1.99e-15!83;UBERON:0004290!5.01e-14!70;UBERON:0002385!7.71e-13!63;UBERON:0001015!7.71e-13!63;UBERON:0000383!7.71e-13!63;UBERON:0001134!1.11e-12!61;UBERON:0002036!1.11e-12!61;UBERON:0003082!1.11e-12!61;UBERON:0000486!3.26e-11!82;UBERON:0005256!8.93e-11!143;UBERON:0000948!3.11e-08!24;UBERON:0005498!3.11e-08!24;UBERON:0004140!3.11e-08!24;UBERON:0009881!3.11e-08!24;UBERON:0004141!3.11e-08!24;UBERON:0003084!3.11e-08!24;UBERON:0007005!3.11e-08!24;UBERON:0004139!3.11e-08!24;UBERON:0004291!3.11e-08!24;UBERON:0004872!3.65e-08!84;UBERON:0002100!8.57e-08!216;UBERON:0003102!1.19e-07!95;UBERON:0002199!5.47e-07!45;UBERON:0002416!5.47e-07!45;UBERON:0000475!7.26e-07!365;UBERON:0002384!7.34e-07!375 | |ontology_enrichment_uberon=UBERON:0000914!1.99e-15!83;UBERON:0002329!1.99e-15!83;UBERON:0003077!1.99e-15!83;UBERON:0003059!1.99e-15!83;UBERON:0007282!1.99e-15!83;UBERON:0009618!1.99e-15!83;UBERON:0007285!1.99e-15!83;UBERON:0004290!5.01e-14!70;UBERON:0002385!7.71e-13!63;UBERON:0001015!7.71e-13!63;UBERON:0000383!7.71e-13!63;UBERON:0001134!1.11e-12!61;UBERON:0002036!1.11e-12!61;UBERON:0003082!1.11e-12!61;UBERON:0000486!3.26e-11!82;UBERON:0005256!8.93e-11!143;UBERON:0000948!3.11e-08!24;UBERON:0005498!3.11e-08!24;UBERON:0004140!3.11e-08!24;UBERON:0009881!3.11e-08!24;UBERON:0004141!3.11e-08!24;UBERON:0003084!3.11e-08!24;UBERON:0007005!3.11e-08!24;UBERON:0004139!3.11e-08!24;UBERON:0004291!3.11e-08!24;UBERON:0004872!3.65e-08!84;UBERON:0002100!8.57e-08!216;UBERON:0003102!1.19e-07!95;UBERON:0002199!5.47e-07!45;UBERON:0002416!5.47e-07!45;UBERON:0000475!7.26e-07!365;UBERON:0002384!7.34e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.70e-09;198!UBERON:0003688;4.84e-08;6!UBERON:0002358;4.84e-08;6!UBERON:0003684;4.84e-08;6!UBERON:0001178;4.84e-08;6!UBERON:0004457;9.83e-08;9!UBERON:0000042;9.83e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.99e-11,371;UBERON:0001134,1.80e-10,62;UBERON:0002036,1.80e-10,62;UBERON:0003082,1.80e-10,62;UBERON:0007524,4.34e-10,73;UBERON:0002385,8.06e-10,64;UBERON:0001015,8.06e-10,64;UBERON:0000383,8.06e-10,64;UBERON:0002329,9.36e-10,71;UBERON:0003059,9.36e-10,71;UBERON:0007282,9.36e-10,71;UBERON:0004290,9.36e-10,71;UBERON:0009618,9.36e-10,71;UBERON:0007503,9.77e-10,78;UBERON:0003077,1.81e-09,72;UBERON:0007285,1.81e-09,72;UBERON:0003688,4.99e-08,6;UBERON:0002358,4.99e-08,6;UBERON:0003684,4.99e-08,6;UBERON:0001178,4.99e-08,6;UBERON:0000486,5.60e-08,83;UBERON:0005256,5.17e-07,122 | |||
|phase1_expression=3.45188920614058,6.63711624062048,8.45726424575827,13.009528785907,9.38618298297304,2.61701557230111,10.1319951267324,0,0,0.245733936501509,0,0.218441372130172,1.58260186937072,1.23766352960047,2.98257638155124,1.34465029290355,0,0,0,1.60057375499824,2.85600967741954,1.56727360739044,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0664806419773,0.670700859703636,1.15076305659177,2.53007406669196,7.01873074890245,2.462390822334,7.95285947051099,5.83961844363163,1.32348744029695,1.99556457716308,1.66886092816939,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,13.4182426957736,4.30543739659571,1.19168262731897,18.0707071071753,3.90135220418193,2.80338800071154,4.2699598291882,6.41335625884616,0.622422070799533,1.48181739276657,0.326923806226917,5.2975099675726,5.76175924479999,0.937285727335186,0.624320153660641,0,0.896692083310806,0.117434498643765,0.647491777472526,0.280901613404497,0,0.368502951935304,1.03325781175765,23.7600571456411,16.3196173323848,8.19145225744224,10.0606539854273,0.168336113954066,0.375355559615893,0.277064115484183,3.95079858792754,4.90380473278431,6.46023653298366,0.567160915800105,2.33206526395521,4.48470516518992,7.2056846394251,4.20127534518163,3.40073346486848,4.3798891807757,2.60563598864226,4.05063197379039,3.89748020644795,1.7670364197088,3.86609574297657,5.17267381820198,6.74518225781567,2.21654616100809,1.69560592310488,0,0.272746120590835,0,0.243947412259191,0,0.116193942869518,0,0,0,1.56449532329816,1.28648187638577,2.76269842704961,0,1.44375896333917,0,0,0,0,0,0,0,0,0,0.738155454624648,4.20725321410337,6.9967581926338,14.7008711385542,0,0,0,0,0,0.857839051492628,0.109750285408626,0,0,0,0.651616610620649,1.03993478527958,2.88662684050547,0.115930404975077,2.11335649624479,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,1.68196626518041,1.74384027533312,0.51336800074665,3.10252117818667,0,4.22651376278,3.45719551560332,3.12022310734098,0.771622122786426,2.83698264046557,1.3321108950805,7.00592168924923,16.2786481617433,4.93944202068461,1.30294473717494,3.909311436168,0.791951872933429,0.602878754119172,0.871533458600294,0.199945982364114,0,0,0,6.46987109827273,5.7430967917057,0,1.30303176000821,1.84928690295345,1.07436577943937,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0.981531933753119,1.50051156317903,0.813795071099207,27.2441828605357,18.0213278685133,12.3007883726469,5.15422225967938,3.61135319673263,6.82222512167955,3.10419213877515,1.32845119707087,6.45292089895961,1.56390506042549,4.50342662164303,10.2943027143257,0,0,0,0.303127571446259,8.32177197552485,3.32629322662648,11.6610669674825,4.29693525206575,21.3301671769136,14.0953064181271,8.69902323413396,17.0505156412224,10.3892646511494,0.925258162815933,3.37367278094941,1.47828880824856,3.63478100428535,1.62694529843943,0,0,0,3.09999010044438,2.36718518408732,3.01586154406675,0,0,0,0,0,0,0,0.431831832204279,1.54227252690289,1.35473218771926,2.50844886927427,0,0,0,0,0,0,0.328014645699706,0,0.618246069886334,0.915694648183434,0.247528499761764,0.574265537996172,0,3.21367859688319,0.870036464629098,0.616194468458578,0.921022048356777,1.10269257987624,1.39646318328756,3.91545073568417,0.767039646744908,6.58837063785856,0,0.192190067365106,0.255225424989168,0,0,13.8517432605482,0.6970372701606,1.23213432070436,0,0,0.9266210955196,0,1.48863347743867,2.21465597303108,5.3376454298671,2.303080121802,5.99114583247489,1.27281299170375,6.27958912159384,2.51821440616641,4.94166653524899,2.00281083987667,0.606547444719948,1.58510321173008,0.842516912477962,3.90106991271672,0.731140468893853,3.16950440270266,2.18399858252777,7.7772987574542,7.910568163417,2.2054613741845,0,0.438450885253763,5.20897980840019,1.31178950409327,1.01455188481352,0.6196469961995,1.12678241012897,1.00387946542836,1.47373561519682,1.07001315444375,0,1.47775344708365,3.62224382255892,1.13841952129715,2.44954304171488,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.996239941255349,0,0,0,0,6.22079175323615,0,0,0,0.295930216910801,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53900517007594,0,0,0,0,0,2.1983422416447,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,4.27721101453538,0,0,0,0,11.236087062183,0,0,0,0,0,1.20990716048664,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.0967563312890851,0,0,0,0.0882561266915003,7.23138370497704,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0.866851769704557,0,0,0,1.71906176567983,0,0.837847203816763,0.229160424011684,0.717873024576814,0,0,0,1.14211903227435,9.36779697210249,0,0,0,0,0,0,0,0,0,0,0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| ||
|short_description=p43@COL1A1 | |short_description=p43@COL1A1 | ||
}} | }} |
Latest revision as of 00:33, 16 September 2015
Short description: | p43@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_43_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 54bp_to_ENST00000494334_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.10e-23 | 76 |
multi fate stem cell | 2.06e-16 | 427 |
somatic stem cell | 1.35e-15 | 433 |
stem cell | 1.50e-14 | 441 |
connective tissue cell | 1.31e-10 | 361 |
preadipocyte | 7.76e-10 | 12 |
muscle precursor cell | 8.67e-10 | 58 |
myoblast | 8.67e-10 | 58 |
multi-potent skeletal muscle stem cell | 8.67e-10 | 58 |
mesenchymal cell | 2.54e-09 | 354 |
stromal cell | 6.97e-09 | 28 |
muscle cell | 9.66e-09 | 55 |
smooth muscle cell | 5.82e-08 | 43 |
smooth muscle myoblast | 5.82e-08 | 43 |
extracellular matrix secreting cell | 8.30e-08 | 15 |
motile cell | 2.11e-07 | 386 |
skin fibroblast | 2.88e-07 | 23 |
electrically responsive cell | 4.70e-07 | 61 |
electrically active cell | 4.70e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.99e-11 | 371 |
skeletal muscle tissue | 1.80e-10 | 62 |
striated muscle tissue | 1.80e-10 | 62 |
myotome | 1.80e-10 | 62 |
dense mesenchyme tissue | 4.34e-10 | 73 |
muscle tissue | 8.06e-10 | 64 |
musculature | 8.06e-10 | 64 |
musculature of body | 8.06e-10 | 64 |
somite | 9.36e-10 | 71 |
presomitic mesoderm | 9.36e-10 | 71 |
presumptive segmental plate | 9.36e-10 | 71 |
dermomyotome | 9.36e-10 | 71 |
trunk paraxial mesoderm | 9.36e-10 | 71 |
epithelial vesicle | 9.77e-10 | 78 |
paraxial mesoderm | 1.81e-09 | 72 |
presumptive paraxial mesoderm | 1.81e-09 | 72 |
omentum | 4.99e-08 | 6 |
peritoneum | 4.99e-08 | 6 |
abdominal cavity | 4.99e-08 | 6 |
visceral peritoneum | 4.99e-08 | 6 |
multilaminar epithelium | 5.60e-08 | 83 |
trunk mesenchyme | 5.17e-07 | 122 |