FFCP PHASE1:Hg19::chr17:48272167..48272190,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-454bp_to_ENST00000463440_5end | |||
|cluster_id=chr17:48272167..48272190,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_42_at_COL1A1_5end | |||
|id=chr17:48272167..48272190,- | |||
|ontology_enrichment_celltype=CL:0000055!5.99e-36!180;CL:0000057!1.61e-26!75;CL:0000183!5.25e-12!59;CL:0000048!1.65e-11!430;CL:0000680!2.62e-11!57;CL:0000056!2.62e-11!57;CL:0000355!2.62e-11!57;CL:0000187!4.57e-11!54;CL:0000723!1.21e-10!436;CL:0000034!1.50e-09!444;CL:0002620!2.46e-09!23;CL:0000393!1.24e-08!60;CL:0000211!1.24e-08!60;CL:0002334!4.63e-08!12;CL:0002494!6.07e-08!16;CL:0000192!1.27e-07!42;CL:0000514!1.27e-07!42;CL:0000499!3.64e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.96e-09;55!CL:0000057;1.49e-08;73!CL:0002620;2.50e-08;23!CL:0002320;2.99e-08;188!CL:0000048;3.88e-08;58!CL:0000723;1.86e-07;61!CL:0002334;7.33e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.18e-23,76;CL:0000048,1.48e-14,427;CL:0000723,7.94e-14,433;CL:0000034,6.79e-13,441;CL:0002320,1.21e-09,361;CL:0000134,8.42e-09,354;CL:0002620,2.64e-08,23;CL:0000680,6.25e-08,58;CL:0000056,6.25e-08,58;CL:0000355,6.25e-08,58;CL:0000187,1.90e-07,55;CL:0000219,2.07e-07,386;CL:0002334,5.92e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.04e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.29e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.94e-15!83;UBERON:0002329!9.94e-15!83;UBERON:0003077!9.94e-15!83;UBERON:0003059!9.94e-15!83;UBERON:0007282!9.94e-15!83;UBERON:0009618!9.94e-15!83;UBERON:0007285!9.94e-15!83;UBERON:0002385!2.08e-12!63;UBERON:0001015!2.08e-12!63;UBERON:0000383!2.08e-12!63;UBERON:0001134!4.04e-12!61;UBERON:0002036!4.04e-12!61;UBERON:0003082!4.04e-12!61;UBERON:0004290!4.32e-12!70;UBERON:0005256!5.49e-11!143;UBERON:0000486!3.82e-09!82;UBERON:0000948!4.40e-08!24;UBERON:0005498!4.40e-08!24;UBERON:0004140!4.40e-08!24;UBERON:0009881!4.40e-08!24;UBERON:0004141!4.40e-08!24;UBERON:0003084!4.40e-08!24;UBERON:0007005!4.40e-08!24;UBERON:0004139!4.40e-08!24;UBERON:0004291!4.40e-08!24;UBERON:0002100!5.60e-08!216;UBERON:0004872!1.58e-07!84;UBERON:0000475!8.78e-07!365;UBERON:0002384!9.75e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.77e-08;6!UBERON:0002358;2.77e-08;6!UBERON:0003684;2.77e-08;6!UBERON:0001178;2.77e-08;6!UBERON:0002384;7.22e-08;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,6.62e-10,371;UBERON:0001134,1.28e-08,62;UBERON:0002036,1.28e-08,62;UBERON:0003082,1.28e-08,62;UBERON:0003688,2.84e-08,6;UBERON:0002358,2.84e-08,6;UBERON:0003684,2.84e-08,6;UBERON:0001178,2.84e-08,6;UBERON:0002385,4.46e-08,64;UBERON:0001015,4.46e-08,64;UBERON:0000383,4.46e-08,64;UBERON:0007524,2.02e-07,73;UBERON:0002329,4.53e-07,71;UBERON:0003059,4.53e-07,71;UBERON:0007282,4.53e-07,71;UBERON:0004290,4.53e-07,71;UBERON:0009618,4.53e-07,71;UBERON:0003077,7.41e-07,72;UBERON:0007285,7.41e-07,72 | |||
|phase1_expression=6.35874327446948,10.2768251467672,9.72585388262201,13.009528785907,16.0905993993824,6.10636966870258,7.59899634504932,0,0,0.245733936501509,0,0,2.37390280405608,0.37129905888014,1.65698687863958,0,0,0,1.46379839637152,1.23121058076788,2.65200898617529,3.44800193625897,0.286235987131057,0,0.87879847716362,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,2.01210257911091,1.02290049474824,4.3372698286148,3.50936537445123,3.76600949298142,5.5670016293577,8.75942766544745,0.0945348171640679,1.77383517970051,1.84453049955565,0.0654895377488563,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.3637378262893,3.67228483827281,0.926864265692532,14.0549944166919,3.54668382198357,1.68203280042692,4.2699598291882,3.7000132262574,0.933633106199299,2.82892411346345,1.30769522490767,3.63257826347835,2.88087962239999,0.70296429550139,0,0,0.896692083310806,0.352303495931295,0.161872944368132,0.280901613404497,0.408308342509787,0.491337269247072,1.03325781175765,13.0680314301026,14.5887488274349,5.46096817162816,9.3420358436111,0.168336113954066,1.00094815897571,0.831192346452549,2.19488810440419,5.51678032438235,9.16452159330241,0.907457465280168,4.30535125653269,7.47450860864986,6.78182083710598,5.70173082560364,3.60683852334536,4.89517026086695,3.16398655763703,6.58227695740938,4.28722822709274,3.78650661366172,4.69454483075727,5.81925804547723,4.61512470271599,2.41805035746337,1.18692414617341,0,0,0,0,0,0,0,0,0,3.12899064659632,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,7.01208869017229,4.5273141246454,7.3504355692771,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,1.03993478527958,0,0,1.29149563659404,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0,0,1.71072446022705,0,0,0,0.897048674762886,2.61576041299968,0.4400297149257,4.91232519879556,0,3.381211010224,1.59562869950922,4.16029747645464,0.514414748524284,2.83698264046557,3.19706614819319,4.28933980974443,9.76718889704597,4.11620168390384,0.977208552881205,4.6200953336531,0,0.602878754119172,0.871533458600294,0.599837947092342,0,0,0,6.23024624278115,20.6751484501405,0,1.01346914667305,3.08214483825575,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,1.00034104211935,0.542530047399471,23.708678214512,17.4860409021219,11.5122762974772,5.03708084468667,5.11608369537122,11.3703752027992,3.10419213877515,3.98535359121262,4.97796755062599,0.868836144680828,2.93701736194111,10.6374461381365,0,0,0,0,4.99306318531491,4.83824469327489,9.42809669711352,4.910783145218,27.7853493488743,15.6329762091955,4.60536524160033,14.4768529029247,11.8734453155993,0.925258162815933,2.84098760501003,0.574890092096664,0.519254429183621,1.51073491997947,0,0.200506470303285,0,2.75554675595056,4.00600569614778,4.19598127870157,0,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0.541892875087706,0.501689773854853,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0.103041011647722,1.28197250745681,0.41254749960294,0,0,8.03419649220798,0.773365746336976,2.00263202249038,2.14905144616581,2.06754858726796,0.966782203814463,2.90033387828457,0.681813019328807,4.89676196057055,0.165284915360978,0,0,0.30347334256665,0.929691098594572,7.870308670766,0,0.308033580176089,0.532306030317022,0,0.55597265731176,0.429374660225974,0.744316738719335,0.949138274156178,5.71890581771475,0.767693373934002,1.71175595213568,1.90921948755562,3.92474320099615,2.33834194858309,7.13796277313742,3.53437207037059,0.606547444719948,1.58510321173008,1.68503382495592,0,0.487426979262569,2.11300293513511,2.45699840534374,8.62573134917648,2.26016233240486,3.30819206127675,0,0,0,3.27947376023316,0.811641507850816,1.239293992399,3.09865162785466,1.14729081763241,2.35797698431491,2.49669736036875,0,0.844430541190656,2.96365403663912,0.379473173765715,0.349934720244983,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.276283915531148,0,0,0,9.33118762985422,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0,0,0,0,0,0,0.139423744278603,1.30815439456455,0.227884111694002,0,0,0.108647371922008,0,2.38153742844842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,2.4441205797345,0,0,0,0,10.4335094148843,0,0,0,0,0,4.83962864194656,0.30607276163049,0.442306057399416,0,0,0,0,0,0,0.284609546029793,0,0,0,0,1.22308667769421,0,0,0.0730893170861856,0,0.0969890164884194,0.0882561266915003,3.16373037092745,0,0,0,0,0.160317640503067,0.213452994739353,0,0,0,0,0,0,0,0,0.209205692624666,0,0.577901179803038,0,0,0,2.57859264851974,0,0.558564802544508,0,0.717873024576814,0,0,0,0.739018197353989,5.76479813667846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262272940674991,0,0,0,1.42939065274673,0,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| |||
|short_description=p42@COL1A1 | |||
}} |
Latest revision as of 00:51, 16 September 2015
Short description: | p42@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_42_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -454bp_to_ENST00000463440_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.18e-23 | 76 |
multi fate stem cell | 1.48e-14 | 427 |
somatic stem cell | 7.94e-14 | 433 |
stem cell | 6.79e-13 | 441 |
connective tissue cell | 1.21e-09 | 361 |
mesenchymal cell | 8.42e-09 | 354 |
skin fibroblast | 2.64e-08 | 23 |
muscle precursor cell | 6.25e-08 | 58 |
myoblast | 6.25e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.25e-08 | 58 |
muscle cell | 1.90e-07 | 55 |
motile cell | 2.07e-07 | 386 |
preadipocyte | 5.92e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 6.62e-10 | 371 |
skeletal muscle tissue | 1.28e-08 | 62 |
striated muscle tissue | 1.28e-08 | 62 |
myotome | 1.28e-08 | 62 |
omentum | 2.84e-08 | 6 |
peritoneum | 2.84e-08 | 6 |
abdominal cavity | 2.84e-08 | 6 |
visceral peritoneum | 2.84e-08 | 6 |
muscle tissue | 4.46e-08 | 64 |
musculature | 4.46e-08 | 64 |
musculature of body | 4.46e-08 | 64 |
dense mesenchyme tissue | 2.02e-07 | 73 |
somite | 4.53e-07 | 71 |
presomitic mesoderm | 4.53e-07 | 71 |
presumptive segmental plate | 4.53e-07 | 71 |
dermomyotome | 4.53e-07 | 71 |
trunk paraxial mesoderm | 4.53e-07 | 71 |
paraxial mesoderm | 7.41e-07 | 72 |
presumptive paraxial mesoderm | 7.41e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.29e-07 | 14 |