FFCP PHASE1:Hg19::chr17:48272988..48273034,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000471344_5end | |association_with_transcript=0bp_to_ENST00000471344_5end | ||
|cluster_id=chr17:48272988..48273034,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_28_at_COL1A1_5end | |description=CAGE_peak_28_at_COL1A1_5end | ||
|id=chr17:48272988..48273034,- | |id=chr17:48272988..48273034,- | ||
|ontology_enrichment_celltype=CL:0000055!5.71e-38!180;CL:0000057!3.11e-23!75;CL:0000183!5.23e-16!59;CL:0000680!1.30e-15!57;CL:0000056!1.30e-15!57;CL:0000355!1.30e-15!57;CL:0000187!4.53e-15!54;CL:0000393!9.05e-14!60;CL:0000211!9.05e-14!60;CL:0000192!3.83e-12!42;CL:0000514!3.83e-12!42;CL:0000048!5.07e-11!430;CL:0000723!4.49e-10!436;CL:0000034!1.53e-09!444;CL:0000359!2.40e-08!32;CL:0002620!5.30e-08!23;CL:0002334!1.09e-07!12;CL:0000499!1.43e-07!27;CL:0002494!3.29e-07!16;CL:0000222!8.62e-07!119 | |ontology_enrichment_celltype=CL:0000055!5.71e-38!180;CL:0000057!3.11e-23!75;CL:0000183!5.23e-16!59;CL:0000680!1.30e-15!57;CL:0000056!1.30e-15!57;CL:0000355!1.30e-15!57;CL:0000187!4.53e-15!54;CL:0000393!9.05e-14!60;CL:0000211!9.05e-14!60;CL:0000192!3.83e-12!42;CL:0000514!3.83e-12!42;CL:0000048!5.07e-11!430;CL:0000723!4.49e-10!436;CL:0000034!1.53e-09!444;CL:0000359!2.40e-08!32;CL:0002620!5.30e-08!23;CL:0002334!1.09e-07!12;CL:0000499!1.43e-07!27;CL:0002494!3.29e-07!16;CL:0000222!8.62e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000134;1.28e-10;55!CL:0000192;2.92e-10;43!CL:0000187;5.63e-10;55!CL:0000723;8.44e-10;61!CL:0000048;1.62e-09;58!CL:0000359;3.32e-09;32!CL:0002320;4.05e-09;188!CL:0000057;1.37e-08;73!CL:0002494;1.97e-08;16!CL:0000393;2.55e-08;61!CL:0000211;2.55e-08;61!CL:0002334;4.72e-08;12!CL:0000499;8.72e-08;28!CL:0002620;5.34e-07;23!CL:0000327;5.61e-07;15!CL:0000034;5.68e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.91e-24,76;CL:0000048,4.74e-18,427;CL:0000680,2.96e-17,58;CL:0000056,2.96e-17,58;CL:0000355,2.96e-17,58;CL:0000187,4.20e-17,55;CL:0000723,4.55e-17,433;CL:0000034,8.18e-16,441;CL:0000192,4.40e-14,43;CL:0000514,4.40e-14,43;CL:0000393,5.92e-14,61;CL:0000211,5.92e-14,61;CL:0000359,1.50e-09,32;CL:0002320,4.80e-09,361;CL:0002494,1.57e-08,16;CL:0002334,4.70e-08,12;CL:0000499,7.69e-08,28;CL:0000134,9.98e-08,354;CL:0000222,2.71e-07,121;CL:0000327,4.33e-07,15;CL:0002620,6.40e-07,23;CL:0002570,9.43e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000514;2.92e-10;43!CL:0000355;2.89e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.40e-17!83;UBERON:0002329!1.40e-17!83;UBERON:0003077!1.40e-17!83;UBERON:0003059!1.40e-17!83;UBERON:0007282!1.40e-17!83;UBERON:0009618!1.40e-17!83;UBERON:0007285!1.40e-17!83;UBERON:0004290!9.23e-16!70;UBERON:0001134!1.16e-15!61;UBERON:0002036!1.16e-15!61;UBERON:0003082!1.16e-15!61;UBERON:0002385!1.27e-15!63;UBERON:0001015!1.27e-15!63;UBERON:0000383!1.27e-15!63;UBERON:0005256!3.35e-13!143;UBERON:0000486!3.21e-12!82;UBERON:0002100!2.26e-09!216;UBERON:0004872!1.93e-08!84;UBERON:0000475!3.48e-08!365;UBERON:0001013!1.48e-07!14;UBERON:0002199!2.95e-07!45;UBERON:0002416!2.95e-07!45;UBERON:0000948!5.52e-07!24;UBERON:0005498!5.52e-07!24;UBERON:0004140!5.52e-07!24;UBERON:0009881!5.52e-07!24;UBERON:0004141!5.52e-07!24;UBERON:0003084!5.52e-07!24;UBERON:0007005!5.52e-07!24;UBERON:0004139!5.52e-07!24;UBERON:0004291!5.52e-07!24;UBERON:0003102!8.52e-07!95 | |ontology_enrichment_uberon=UBERON:0000914!1.40e-17!83;UBERON:0002329!1.40e-17!83;UBERON:0003077!1.40e-17!83;UBERON:0003059!1.40e-17!83;UBERON:0007282!1.40e-17!83;UBERON:0009618!1.40e-17!83;UBERON:0007285!1.40e-17!83;UBERON:0004290!9.23e-16!70;UBERON:0001134!1.16e-15!61;UBERON:0002036!1.16e-15!61;UBERON:0003082!1.16e-15!61;UBERON:0002385!1.27e-15!63;UBERON:0001015!1.27e-15!63;UBERON:0000383!1.27e-15!63;UBERON:0005256!3.35e-13!143;UBERON:0000486!3.21e-12!82;UBERON:0002100!2.26e-09!216;UBERON:0004872!1.93e-08!84;UBERON:0000475!3.48e-08!365;UBERON:0001013!1.48e-07!14;UBERON:0002199!2.95e-07!45;UBERON:0002416!2.95e-07!45;UBERON:0000948!5.52e-07!24;UBERON:0005498!5.52e-07!24;UBERON:0004140!5.52e-07!24;UBERON:0009881!5.52e-07!24;UBERON:0004141!5.52e-07!24;UBERON:0003084!5.52e-07!24;UBERON:0007005!5.52e-07!24;UBERON:0004139!5.52e-07!24;UBERON:0004291!5.52e-07!24;UBERON:0003102!8.52e-07!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;6.75e-09;198!UBERON:0001013;2.83e-07;14!UBERON:0000948;3.34e-07;22!UBERON:0003688;3.55e-07;6!UBERON:0002358;3.55e-07;6!UBERON:0003684;3.55e-07;6!UBERON:0001178;3.55e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.21e-17,62;UBERON:0002036,1.21e-17,62;UBERON:0003082,1.21e-17,62;UBERON:0002385,1.41e-16,64;UBERON:0001015,1.41e-16,64;UBERON:0000383,1.41e-16,64;UBERON:0007524,1.90e-16,73;UBERON:0002329,3.27e-16,71;UBERON:0003059,3.27e-16,71;UBERON:0007282,3.27e-16,71;UBERON:0004290,3.27e-16,71;UBERON:0009618,3.27e-16,71;UBERON:0007503,4.58e-16,78;UBERON:0003077,9.49e-16,72;UBERON:0007285,9.49e-16,72;UBERON:0000486,6.17e-13,83;UBERON:0005256,3.89e-12,122;UBERON:0003104,3.81e-11,160;UBERON:0009142,3.81e-11,160;UBERON:0002384,4.23e-09,371;UBERON:0004872,4.89e-08,83;UBERON:0001013,2.09e-07,14;UBERON:0000948,3.42e-07,24;UBERON:0005498,3.42e-07,24;UBERON:0004140,3.42e-07,24;UBERON:0009881,3.42e-07,24;UBERON:0004141,3.42e-07,24;UBERON:0003084,3.42e-07,24;UBERON:0007005,3.42e-07,24;UBERON:0004139,3.42e-07,24;UBERON:0004291,3.42e-07,24;UBERON:0003688,3.42e-07,6;UBERON:0002358,3.42e-07,6;UBERON:0003684,3.42e-07,6;UBERON:0001178,3.42e-07,6;UBERON:0000926,4.08e-07,315;UBERON:0004120,4.08e-07,315;UBERON:0006603,4.08e-07,315;UBERON:0002199,4.60e-07,46;UBERON:0002416,4.60e-07,46 | |||
|phase1_expression=15.4426622379973,22.2664544846622,20.8612518062037,16.0117277365009,33.9690431764739,16.574431957907,15.1979926900986,1.89515962028049,0.261185628199839,0,0.697801167972428,0.436882744260345,6.06664049925443,1.8564952944007,4.63956326019082,2.01697543935533,1.80808358407193,1.46062018077475,0,2.58554221961255,4.28401451612931,6.58254915103984,0.572471974262113,1.09499540058307,1.50651167513763,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8187552945358,3.35350429851818,1.91793842765295,7.95166135246046,10.0267582127178,6.22840031531542,4.7717156823066,14.1124112387764,0.756278537312543,4.65631734671384,3.60122621341817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,36.7759244254536,9.75054939817264,3.31022952033047,29.5441719371278,9.930714701554,7.8494864019923,4.2699598291882,13.0733800661095,1.8672662123986,4.04132016209064,2.28846664358842,7.56787138224657,9.21881479167998,1.64025002283658,0,0,0.747243402759005,1.17434498643765,0.971237666208789,0.842704840213491,0.204154171254893,1.47401180774122,2.89312187292143,26.1360628602052,39.8099756138477,10.9219363432563,17.965453545406,1.0100166837244,2.25213335769535,0.554128230968366,4.82875382968922,14.0984386067549,24.9395177784951,0.907457465280168,5.56107870635472,14.0947876620254,12.5039821684141,12.3037349394605,6.38925681278321,6.44101350114073,7.258557396932,12.4894485858537,8.28214543870188,5.80597680761463,8.19244097916464,9.5371173523099,9.23024940543197,4.33234022378853,4.57813599238317,0,0.272746120590835,0,0.243947412259191,0,0.116193942869518,0.414644220061482,0,0,3.12899064659632,2.57296375277154,1.38134921352481,2.78620756819187,2.16563844500876,0,0,0.241011029883482,0,0,0,0,0,0.38474715694639,0,7.01208869017229,14.405090396599,17.641045366265,0,0,1.18157981336281,0,0,0.343135620597051,0,0,0,0,0.651616610620649,0,1.44331342025273,0.34779121492523,3.28744343860301,0,0,0,0,0,0,0,0,0,1.17587489739202,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0.102827492703324,0,0,1.68196626518041,2.61576041299968,1.54010400223995,8.01484637698222,3.57656445851882,7.607724773004,5.58470044828228,6.24044621468197,1.80045161983499,2.83698264046557,2.66422179016099,6.0050757336422,26.0458370587893,3.29296134712308,4.88604276440603,4.6200953336531,3.16780749173372,0.904318131178758,1.74306691720059,1.59956785891291,0,0,0,10.7831184971212,22.9723871668228,0,2.17171960001369,3.90405012845728,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.981531933753119,6.00204625271613,2.44138521329762,51.9927153827018,35.8642267482295,26.494005725701,12.2998485742349,9.32932909155929,20.4666753650386,3.10419213877515,3.98535359121262,7.00602840458472,2.17209036170207,7.04884166865866,17.5003146143537,0,0,0,0.606255142892519,6.65741758041988,8.46692821323105,20.0967324333209,8.90079445070762,57.5353193587801,33.0599005079708,14.8395102229344,45.5216596836409,8.90508398669946,4.31787142647436,7.63515418846446,0.98552587216571,2.07701771673448,2.67283870457906,0,0.200506470303285,0,7.46293913069944,9.28664956834257,11.2766996865105,0,0,0,0,0,1.13733384070897,0,0,4.62681758070868,1.35473218771926,3.01013864312912,0,0,0,0,0,0,0.984043937099117,0,0.206082023295445,2.38080608527693,0.907604499126468,1.14853107599234,0.650060246036521,9.64103579064957,1.25671933779759,0.924291702687866,3.37708084397485,3.03240459465967,2.90034661144339,5.80066775656914,1.70453254832202,10.7728763132552,0.165284915360978,0.384380134730212,0,0.10115778085555,2.78907329578371,25.4998000932818,0.6970372701606,2.46426864140871,1.59691809095107,1.73986598415015,2.22389062924704,1.28812398067792,1.116475108079,2.53103539774981,14.106634350363,4.09436466098134,5.56320684444097,3.18203247925937,9.41938368239076,3.23770423649967,13.7268514868027,7.53999375012393,1.41527737101321,6.34041284692033,2.10629228119491,3.41343617362713,1.70599442741899,1.05650146756755,3.54899769660763,19.2311387457049,5.65040583101214,5.51365343546124,0,1.31535265576129,5.78775534266688,5.9030527684197,2.63783490051515,3.40805847909725,5.63391205064483,1.57752487424457,3.34046739444612,1.78335525740625,0.354761064070598,3.79993743535795,4.61012850143863,2.27683904259429,3.14941248220485,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.796991953004279,0.552567831062295,0,0.102268682502155,0,20.5286127856793,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0.724999575434793,0,0,0.236387681767936,0,0.291604613383254,0,0.885741385813839,0,0,0,0,0,0,0,3.84751292518985,0.91153644677601,0,0,0,0.31900115973192,12.2740775158495,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,3.66618086960175,0,0,0,0,15.248975298677,0,0,0,0,0.394584402849391,6.04953580243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| ||
|short_description=p28@COL1A1 | |short_description=p28@COL1A1 | ||
}} | }} |
Latest revision as of 01:02, 16 September 2015
Short description: | p28@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_ENST00000471344_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.91e-24 | 76 |
multi fate stem cell | 4.74e-18 | 427 |
muscle precursor cell | 2.96e-17 | 58 |
myoblast | 2.96e-17 | 58 |
multi-potent skeletal muscle stem cell | 2.96e-17 | 58 |
muscle cell | 4.20e-17 | 55 |
somatic stem cell | 4.55e-17 | 433 |
stem cell | 8.18e-16 | 441 |
smooth muscle cell | 4.40e-14 | 43 |
smooth muscle myoblast | 4.40e-14 | 43 |
electrically responsive cell | 5.92e-14 | 61 |
electrically active cell | 5.92e-14 | 61 |
vascular associated smooth muscle cell | 1.50e-09 | 32 |
connective tissue cell | 4.80e-09 | 361 |
cardiocyte | 1.57e-08 | 16 |
preadipocyte | 4.70e-08 | 12 |
stromal cell | 7.69e-08 | 28 |
mesenchymal cell | 9.98e-08 | 354 |
mesodermal cell | 2.71e-07 | 121 |
extracellular matrix secreting cell | 4.33e-07 | 15 |
skin fibroblast | 6.40e-07 | 23 |
mesenchymal stem cell of adipose | 9.43e-07 | 8 |