FFCP PHASE1:Hg19::chr19:13617247..13617319,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:13617247..13617319,- to FFCP PHASE1:Hg19::chr19:13617247..13617319,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=773 | |EntrezGene=773 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1388 | |HGNC=1388 | ||
|TSSclassifier=strong | |||
|UniProt=O00555,Q9NS88,B5TYJ1 | |UniProt=O00555,Q9NS88,B5TYJ1 | ||
|association_with_transcript=0bp_to_ENST00000325084,ENST00000360228,NM_000068,NM_001127221,NM_001127222,NM_001174080,NM_023035,uc002mwy.3,uc010dze.2_5end | |||
|cluster_id=chr19:13617247..13617319,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_1_at_CACNA1A_5end | |||
|id=chr19:13617247..13617319,- | |||
|ontology_enrichment_celltype=CL:0000055!8.79e-31!180;CL:0000393!1.19e-14!60;CL:0000211!1.19e-14!60;CL:0000680!1.09e-12!57;CL:0000056!1.09e-12!57;CL:0000355!1.09e-12!57;CL:0000187!4.56e-12!54;CL:0000183!2.26e-10!59;CL:0000057!5.04e-09!75;CL:0000192!7.76e-09!42;CL:0000514!7.76e-09!42;CL:0002620!1.60e-08!23;CL:0000359!1.27e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.41e-10;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,3.95e-10,23;CL:0000393,2.72e-07,61;CL:0000211,2.72e-07,61;CL:0000057,7.25e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.20e-34!57;UBERON:0005068!9.20e-34!57;UBERON:0006241!9.20e-34!57;UBERON:0007135!9.20e-34!57;UBERON:0001017!2.58e-31!82;UBERON:0005743!1.27e-29!86;UBERON:0002616!2.28e-28!59;UBERON:0000073!3.64e-28!94;UBERON:0001016!3.64e-28!94;UBERON:0003075!1.04e-26!86;UBERON:0007284!1.04e-26!86;UBERON:0002346!5.70e-25!90;UBERON:0000955!2.30e-24!69;UBERON:0006238!2.30e-24!69;UBERON:0003080!5.40e-24!42;UBERON:0002780!7.99e-24!41;UBERON:0001890!7.99e-24!41;UBERON:0006240!7.99e-24!41;UBERON:0001893!1.09e-20!34;UBERON:0002020!1.55e-20!34;UBERON:0003528!1.55e-20!34;UBERON:0001869!5.02e-20!32;UBERON:0002791!6.97e-20!33;UBERON:0000475!2.77e-18!365;UBERON:0003056!4.97e-18!61;UBERON:0004121!1.80e-17!169;UBERON:0000924!9.91e-17!173;UBERON:0006601!9.91e-17!173;UBERON:0002619!1.08e-16!22;UBERON:0000956!1.47e-15!25;UBERON:0000203!1.47e-15!25;UBERON:0000033!1.49e-15!123;UBERON:0001950!2.37e-15!20;UBERON:0000153!5.55e-14!129;UBERON:0007811!5.55e-14!129;UBERON:0000914!1.79e-13!83;UBERON:0002329!1.79e-13!83;UBERON:0003077!1.79e-13!83;UBERON:0003059!1.79e-13!83;UBERON:0007282!1.79e-13!83;UBERON:0009618!1.79e-13!83;UBERON:0007285!1.79e-13!83;UBERON:0004290!3.03e-13!70;UBERON:0007023!1.38e-12!115;UBERON:0000119!3.19e-12!312;UBERON:0001134!4.29e-12!61;UBERON:0002036!4.29e-12!61;UBERON:0003082!4.29e-12!61;UBERON:0000483!8.80e-12!309;UBERON:0002385!9.52e-12!63;UBERON:0001015!9.52e-12!63;UBERON:0000383!9.52e-12!63;UBERON:0003076!7.87e-11!15;UBERON:0003057!7.87e-11!15;UBERON:0000025!1.34e-10!194;UBERON:0000486!3.57e-10!82;UBERON:0000468!3.39e-09!659;UBERON:0004733!3.47e-09!12;UBERON:0002028!3.47e-09!12;UBERON:0007277!3.47e-09!12;UBERON:0002199!1.42e-08!45;UBERON:0002416!1.42e-08!45;UBERON:0000481!3.28e-08!347;UBERON:0004732!4.23e-08!13;UBERON:0002097!1.30e-07!40;UBERON:0002680!3.10e-07!9;UBERON:0001895!3.10e-07!9;UBERON:0010092!3.10e-07!9;UBERON:0000467!4.59e-07!625;UBERON:0004111!5.26e-07!241;UBERON:0000480!5.92e-07!626;UBERON:0000477!7.63e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.46e-22;22!UBERON:0001893;5.46e-22;34!UBERON:0001869;6.47e-22;32!UBERON:0000073;8.56e-22;53!UBERON:0002616;8.56e-22;53!UBERON:0003528;1.75e-21;34!UBERON:0002020;1.75e-21;34!UBERON:0002791;2.39e-21;32!UBERON:0002780;1.11e-20;41!UBERON:0001890;1.11e-20;41!UBERON:0001950;2.06e-20;20!UBERON:0000956;1.30e-18;25!UBERON:0000203;1.30e-18;25!UBERON:0000955;1.20e-14;68!UBERON:0001017;1.97e-14;75!UBERON:0001016;5.33e-13;83!UBERON:0004733;8.60e-12;12!UBERON:0002028;8.60e-12;12!UBERON:0004732;1.37e-10;13!UBERON:0002680;4.22e-09;9!UBERON:0001895;4.22e-09;9!UBERON:0002420;2.79e-08;9!UBERON:0007245;2.79e-08;9!UBERON:0010009;2.79e-08;9!UBERON:0010011;2.79e-08;9!UBERON:0000454;2.79e-08;9!UBERON:0000125;3.41e-08;9!UBERON:0002308;3.41e-08;9!UBERON:0000200;2.30e-07;6!UBERON:0002021;2.32e-07;5!UBERON:0001872;7.69e-07;5!UBERON:0009663;8.04e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.60e-42,56;UBERON:0005068,7.60e-42,56;UBERON:0006241,7.60e-42,56;UBERON:0007135,7.60e-42,56;UBERON:0000073,1.96e-39,53;UBERON:0002616,1.96e-39,53;UBERON:0001017,2.01e-39,81;UBERON:0001016,9.32e-35,89;UBERON:0000955,3.28e-32,68;UBERON:0006238,3.28e-32,68;UBERON:0003075,1.19e-31,82;UBERON:0007284,1.19e-31,82;UBERON:0002346,3.41e-29,86;UBERON:0002780,1.02e-28,41;UBERON:0001890,1.02e-28,41;UBERON:0003080,1.02e-28,41;UBERON:0006240,1.02e-28,41;UBERON:0001893,1.09e-25,34;UBERON:0010314,1.34e-25,132;UBERON:0003528,1.73e-25,34;UBERON:0002020,1.73e-25,34;UBERON:0010371,3.47e-25,104;UBERON:0001869,9.01e-25,32;UBERON:0002791,5.46e-24,32;UBERON:0002619,2.34e-22,22;UBERON:0003056,1.92e-21,61;UBERON:0001950,1.56e-20,20;UBERON:0000956,9.28e-19,25;UBERON:0000203,9.28e-19,25;UBERON:0004121,1.57e-18,171;UBERON:0000924,1.57e-18,171;UBERON:0006601,1.57e-18,171;UBERON:0003076,4.10e-14,15;UBERON:0003057,4.10e-14,15;UBERON:0004733,6.90e-12,12;UBERON:0002028,6.90e-12,12;UBERON:0007277,6.90e-12,12;UBERON:0007023,1.75e-11,114;UBERON:0004732,1.12e-10,13;UBERON:0000025,2.70e-10,192;UBERON:0002680,2.99e-09,9;UBERON:0001895,2.99e-09,9;UBERON:0010092,2.99e-09,9;UBERON:0002199,2.51e-08,46;UBERON:0002416,2.51e-08,46;UBERON:0002420,2.95e-08,9;UBERON:0007245,2.95e-08,9;UBERON:0010009,2.95e-08,9;UBERON:0010011,2.95e-08,9;UBERON:0000454,2.95e-08,9;UBERON:0000125,3.58e-08,9;UBERON:0002308,3.58e-08,9;UBERON:0000483,7.59e-08,306;UBERON:0000119,1.52e-07,309;UBERON:0002097,1.62e-07,41;UBERON:0000200,2.34e-07,6;UBERON:0002021,2.34e-07,5;UBERON:0007524,5.46e-07,73;UBERON:0001872,7.29e-07,5;UBERON:0002037,8.71e-07,6;UBERON:0006215,8.71e-07,6 | |||
|phase1_expression=3.45188920614058,1.49870366723688,4.65149533516705,2.00146596706261,0.446961094427288,0.872338524100369,0,5.05375898741465,3.13422753839806,0,0,0,0,0.247532705920093,0.331397375727916,0.672325146451775,0.602694528023977,1.46062018077475,1.46379839637152,3.93987385845721,2.65200898617529,2.82109249330279,0.286235987131057,0.547497700291537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02420515822182,0.383587685530591,7.59022220007589,8.52274448081012,4.49024208778554,10.3387173116643,13.6257763684738,0,0,0.175669571386252,3.07800827419625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9273268406876,0.759783069987479,7.54732330635347,8.89193524321323,0.709336764396714,0.560677600142307,0,0.74000264525148,4.66816553099649,0.538842688278752,0,0,0,0,2.18512053781224,0.570471821544449,1.19558944441441,0.117434498643765,0,0,1.63323337003915,0.122834317311768,0.309977343527296,1.18800285728205,2.96720315134268,0,0.718618141816238,0,0,0.831192346452549,2.19488810440419,0.919463387397059,3.75595147266492,0.113432183160021,21.1679770112857,4.69826255400848,6.14602513362729,15.0045548042201,3.91599611106068,12.6243864622358,4.65292140828975,10.126579934476,2.82567314967476,23.4763410047026,6.35144300631865,3.55621325001386,21.6555851435135,5.94437379543078,5.59549954624609,0,0,0,6.09868530647977,5.69878003782387,3.95059405756363,5.28671380578389,4.79409616663694,10.2193660541232,1.56449532329816,1.92972281457866,8.28809528114883,0,0,0.118306800039844,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,1.02940686179115,0.109750285408626,0,0,0,0,0,0,1.62302566965108,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,2.67391897890794,3.51652341630141,3.4214489204541,0.102827492703324,0.300343057843917,0.571652865261156,0.448524337381443,0.43596006883328,0.4400297149257,4.78305348303778,0,0.845302752556,0,0,0.514414748524284,0,0.532844358032199,0.142977993658148,0.542621605391443,0,0.325736184293735,0,0,1.80863626235752,0,0,0,0,0,2.87549826589899,0,5.70547620162874,2.46128221334885,0.205476322550383,0.537182889719687,0,0,0,0,1.01637849688985,6.50699269288109,0.773288812777695,3.18280904135263,0.637938751653163,0,0,0,0.613457458595699,0.500170521059677,1.62759014219841,0.831883446123229,0.178428988797162,0,0,4.51419149591578,4.5481500811197,0,1.32845119707087,4.79359838208428,2.95404289191482,0,0.343143423810856,0,0,0,0,0,0,1.98486246255021,2.91577749247319,0.841980283299221,5.25370511948374,2.04682899626681,0.321707842287215,0,0.462629081407967,3.55123450626254,2.7101961484557,1.55776328755086,1.74315567689939,0,0,0,0.229628896329213,0.728364672026868,1.57349297951309,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.0915694648183434,0.330037999682352,1.14853107599234,0,0,4.64019447802185,1.3864375540318,1.84204409671355,0.551346289938122,1.6113036730241,0.870100163485371,3.74997160630844,2.8490251406956,0,0,0,0,0.464845549297286,16.3702420351933,4.8792608911242,8.62494024493049,4.25844824253617,3.47973196830029,2.22389062924704,0.572499546967965,1.116475108079,0,0,0,0,21.6378208589637,1.56989728039846,1.07923474549989,0.54907405947211,0.471249609382746,2.42618977887979,3.17020642346017,2.52755073743389,0.48763373908959,0,0,0.272999822815972,0.282810863907425,2.26016233240486,5.51365343546124,0.66343897524122,0.438450885253763,0.578775534266688,1.31178950409327,0.202910376962704,0.30982349809975,0.845086807596724,1.14729081763241,1.47373561519682,0,1.06428319221179,6.96655196482292,1.97576935775941,3.79473173765715,4.19921664293979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,2.88743956579008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.73795756596497,0,0,0,0,0,3.97659059106519,5.90811548924153,0,0,0,0.996239941255349,0.276283915531148,0,0,0,6.53183134089796,0,0,0,0.295930216910801,0,0,21.3253204140948,10.1117226996418,17.9652418201075,0,0,0.724999575434793,0,0,0,0,0.291604613383254,2.95162491386597,8.85741385813839,5.30624329951795,99.1781286061041,135.570172675681,116.445761867698,8.11725969469698,0,0,0.384751292518985,0.455768223388005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,3.16785325009182,0,6.09087558885882,0,0,0,0,0,11.9368377035891,5.05492637027904,0,0,0,0,0,0,0,0.693373365065693,0,0,0,0.698906672968121,0,0,0,0,0,0.0882561266915003,4.06765333404958,0,0,12.9154023749993,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,3.60252173225874,3.01191833562385,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0.223171457441873,0.403100834920358,1.08089965062721,0,0,0,0,0,0,7.95229689809303,5.99294986890933,5.78711334474069,10.3154577447925,7.89336642255452,0,0,15.3696378344802,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0.542999601753713,0,0.979762080328227,4.7892076624995,0,0,0,0,0,4.78346938537737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| ||
|short_description=p1@CACNA1A | |||
}} | }} |
Latest revision as of 01:12, 16 September 2015
Short description: | p1@CACNA1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CACNA1A_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 0bp_to_ENST00000325084, ENST00000360228, NM_000068, NM_001127221, NM_001127222, NM_001174080, NM_023035, uc002mwy.3, uc010dze.2_5end |
EntrezGene: | CACNA1A |
HGNC: | 1388 |
UniProt: | O00555Q9NS88B5TYJ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 3.95e-10 | 23 |
electrically responsive cell | 2.72e-07 | 61 |
electrically active cell | 2.72e-07 | 61 |
fibroblast | 7.25e-07 | 76 |