FFCP PHASE1:Hg19::chrX:54834767..54834788,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10916 | |EntrezGene=10916 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16353 | |HGNC=16353 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UNF1,Q5H907 | |UniProt=Q9UNF1,Q5H907 | ||
|association_with_transcript=-8bp_to_ENST00000218439,NM_014599,uc004dtl.1,uc004dtm.1,uc010nkc.1_5end | |association_with_transcript=-8bp_to_ENST00000218439,NM_014599,uc004dtl.1,uc004dtm.1,uc010nkc.1_5end | ||
|cluster_id=chrX:54834767..54834788,+ | |||
|description=CAGE_peak_4_at_MAGED2_5end | |description=CAGE_peak_4_at_MAGED2_5end | ||
|id=chrX:54834767..54834788,+ | |id=chrX:54834767..54834788,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.48e-11!180;CL:0000393!1.02e-07!60;CL:0000211!1.02e-07!60;CL:0000192!2.60e-07!42;CL:0000514!2.60e-07!42;CL:0000183!4.86e-07!59 | |ontology_enrichment_celltype=CL:0000055!2.48e-11!180;CL:0000393!1.02e-07!60;CL:0000211!1.02e-07!60;CL:0000192!2.60e-07!42;CL:0000514!2.60e-07!42;CL:0000183!4.86e-07!59 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.92e-07,61;CL:0000211,1.92e-07,61;CL:0000192,5.66e-07,43;CL:0000514,5.66e-07,43 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.09e-17!365;UBERON:0000481!2.14e-16!347;UBERON:0000468!1.19e-15!659;UBERON:0003075!3.10e-13!86;UBERON:0007284!3.10e-13!86;UBERON:0000119!5.64e-13!312;UBERON:0000483!7.90e-13!309;UBERON:0005743!1.42e-12!86;UBERON:0002346!2.74e-12!90;UBERON:0000073!2.88e-12!94;UBERON:0001016!2.88e-12!94;UBERON:0001017!1.11e-11!82;UBERON:0000025!2.15e-11!194;UBERON:0001049!3.26e-11!57;UBERON:0005068!3.26e-11!57;UBERON:0006241!3.26e-11!57;UBERON:0007135!3.26e-11!57;UBERON:0000477!3.81e-11!286;UBERON:0002616!5.90e-11!59;UBERON:0000467!1.25e-10!625;UBERON:0003056!1.82e-10!61;UBERON:0000480!2.45e-10!626;UBERON:0004121!4.98e-10!169;UBERON:0000955!5.26e-10!69;UBERON:0006238!5.26e-10!69;UBERON:0000033!6.92e-10!123;UBERON:0000922!8.13e-10!612;UBERON:0000924!1.47e-09!173;UBERON:0006601!1.47e-09!173;UBERON:0000153!2.04e-09!129;UBERON:0007811!2.04e-09!129;UBERON:0000064!9.00e-09!219;UBERON:0002050!1.27e-08!605;UBERON:0005423!1.27e-08!605;UBERON:0000923!1.82e-08!604;UBERON:0005291!1.82e-08!604;UBERON:0006598!1.82e-08!604;UBERON:0002532!1.82e-08!604;UBERON:0000914!3.17e-08!83;UBERON:0002329!3.17e-08!83;UBERON:0003077!3.17e-08!83;UBERON:0003059!3.17e-08!83;UBERON:0007282!3.17e-08!83;UBERON:0009618!3.17e-08!83;UBERON:0007285!3.17e-08!83;UBERON:0004111!4.38e-08!241;UBERON:0003080!5.65e-08!42;UBERON:0002780!1.33e-07!41;UBERON:0001890!1.33e-07!41;UBERON:0006240!1.33e-07!41;UBERON:0000062!1.41e-07!511;UBERON:0002100!2.00e-07!216;UBERON:0005256!3.30e-07!143;UBERON:0004290!9.86e-07!70 | |ontology_enrichment_uberon=UBERON:0000475!5.09e-17!365;UBERON:0000481!2.14e-16!347;UBERON:0000468!1.19e-15!659;UBERON:0003075!3.10e-13!86;UBERON:0007284!3.10e-13!86;UBERON:0000119!5.64e-13!312;UBERON:0000483!7.90e-13!309;UBERON:0005743!1.42e-12!86;UBERON:0002346!2.74e-12!90;UBERON:0000073!2.88e-12!94;UBERON:0001016!2.88e-12!94;UBERON:0001017!1.11e-11!82;UBERON:0000025!2.15e-11!194;UBERON:0001049!3.26e-11!57;UBERON:0005068!3.26e-11!57;UBERON:0006241!3.26e-11!57;UBERON:0007135!3.26e-11!57;UBERON:0000477!3.81e-11!286;UBERON:0002616!5.90e-11!59;UBERON:0000467!1.25e-10!625;UBERON:0003056!1.82e-10!61;UBERON:0000480!2.45e-10!626;UBERON:0004121!4.98e-10!169;UBERON:0000955!5.26e-10!69;UBERON:0006238!5.26e-10!69;UBERON:0000033!6.92e-10!123;UBERON:0000922!8.13e-10!612;UBERON:0000924!1.47e-09!173;UBERON:0006601!1.47e-09!173;UBERON:0000153!2.04e-09!129;UBERON:0007811!2.04e-09!129;UBERON:0000064!9.00e-09!219;UBERON:0002050!1.27e-08!605;UBERON:0005423!1.27e-08!605;UBERON:0000923!1.82e-08!604;UBERON:0005291!1.82e-08!604;UBERON:0006598!1.82e-08!604;UBERON:0002532!1.82e-08!604;UBERON:0000914!3.17e-08!83;UBERON:0002329!3.17e-08!83;UBERON:0003077!3.17e-08!83;UBERON:0003059!3.17e-08!83;UBERON:0007282!3.17e-08!83;UBERON:0009618!3.17e-08!83;UBERON:0007285!3.17e-08!83;UBERON:0004111!4.38e-08!241;UBERON:0003080!5.65e-08!42;UBERON:0002780!1.33e-07!41;UBERON:0001890!1.33e-07!41;UBERON:0006240!1.33e-07!41;UBERON:0000062!1.41e-07!511;UBERON:0002100!2.00e-07!216;UBERON:0005256!3.30e-07!143;UBERON:0004290!9.86e-07!70 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
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| ||
|short_description=p4@MAGED2 | |short_description=p4@MAGED2 | ||
}} | }} |
Latest revision as of 01:25, 16 September 2015
Short description: | p4@MAGED2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MAGED2_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_ENST00000218439, NM_014599, uc004dtl.1, uc004dtm.1, uc010nkc.1_5end |
EntrezGene: | MAGED2 |
HGNC: | 16353 |
UniProt: | Q9UNF1Q5H907 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.92e-07 | 61 |
electrically active cell | 1.92e-07 | 61 |
smooth muscle cell | 5.66e-07 | 43 |
smooth muscle myoblast | 5.66e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 3.86e-14 | 132 |
neural plate | 1.21e-13 | 82 |
presumptive neural plate | 1.21e-13 | 82 |
cell layer | 8.38e-13 | 309 |
epithelium | 1.17e-12 | 306 |
neurectoderm | 1.23e-12 | 86 |
central nervous system | 2.52e-11 | 81 |
tube | 3.57e-11 | 192 |
nervous system | 4.74e-11 | 89 |
neural tube | 7.34e-11 | 56 |
neural rod | 7.34e-11 | 56 |
future spinal cord | 7.34e-11 | 56 |
neural keel | 7.34e-11 | 56 |
pre-chordal neural plate | 1.67e-10 | 61 |
regional part of nervous system | 2.74e-10 | 53 |
regional part of brain | 2.74e-10 | 53 |
ecto-epithelium | 9.69e-10 | 104 |
brain | 1.20e-09 | 68 |
future brain | 1.20e-09 | 68 |
ectoderm-derived structure | 3.03e-09 | 171 |
ectoderm | 3.03e-09 | 171 |
presumptive ectoderm | 3.03e-09 | 171 |
embryo | 4.28e-08 | 592 |
anatomical conduit | 5.58e-08 | 240 |
organ system subdivision | 5.88e-08 | 223 |
regional part of forebrain | 1.26e-07 | 41 |
forebrain | 1.26e-07 | 41 |
anterior neural tube | 1.26e-07 | 41 |
future forebrain | 1.26e-07 | 41 |
mesenchyme | 3.17e-07 | 160 |
entire embryonic mesenchyme | 3.17e-07 | 160 |
dense mesenchyme tissue | 4.45e-07 | 73 |
paraxial mesoderm | 7.42e-07 | 72 |
presumptive paraxial mesoderm | 7.42e-07 | 72 |