FFCP PHASE1:Hg19::chr3:151987383..151987398,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401093 | |EntrezGene=401093 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_NR_027037,NR_027038,uc011boe.1,uc011bof.1_5end | |association_with_transcript=16bp_to_NR_027037,NR_027038,uc011boe.1,uc011bof.1_5end | ||
|cluster_id=chr3:151987383..151987398,- | |||
|description=CAGE_peak_1_at_LOC401093_5end | |description=CAGE_peak_1_at_LOC401093_5end | ||
|id=chr3:151987383..151987398,- | |id=chr3:151987383..151987398,- | ||
|ontology_enrichment_celltype=CL:0000048!3.57e-08!430;CL:0000723!2.32e-07!436;CL:0000057!3.23e-07!75;CL:0002320!8.36e-07!365 | |ontology_enrichment_celltype=CL:0000048!3.57e-08!430;CL:0000723!2.32e-07!436;CL:0000057!3.23e-07!75;CL:0002320!8.36e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0002564;3.28e-08;3!CL:0000138;4.29e-07;6!CL:0000153;7.20e-07;9!CL:0000447;7.20e-07;9!CL:0002540;8.03e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,9.31e-08,3;CL:0002540,3.72e-07,6;CL:0002320,3.85e-07,361;CL:0000058,5.55e-07,6;CL:0000138,5.55e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;7.44e-09;3!DOID:127;7.44e-09;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,4.71e-09,3;DOID:127,4.71e-09,3;DOID:0060072,7.43e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002204!4.43e-10!167 | |ontology_enrichment_uberon=UBERON:0002204!4.43e-10!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0002242;3.28e-08;3!UBERON:0011135;3.39e-08;5!UBERON:0002216;3.39e-08;5!UBERON:0011134;3.39e-08;5!UBERON:0002209;3.39e-08;5!UBERON:0002213;3.39e-08;5!UBERON:0007844;3.39e-08;5!UBERON:0011138;3.39e-08;5!UBERON:0001130;3.39e-08;5!UBERON:0001066;3.39e-08;5!UBERON:0001468;3.39e-08;5!UBERON:0004905;1.56e-07;8!UBERON:0000982;1.56e-07;8!UBERON:0004770;1.56e-07;8!UBERON:0001434;9.76e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.92e-09,167;UBERON:0011135,4.48e-08,5;UBERON:0002216,4.48e-08,5;UBERON:0011134,4.48e-08,5;UBERON:0002209,4.48e-08,5;UBERON:0002213,4.48e-08,5;UBERON:0005856,4.48e-08,5;UBERON:0005866,4.48e-08,5;UBERON:0005863,4.48e-08,5;UBERON:0007844,4.48e-08,5;UBERON:0011138,4.48e-08,5;UBERON:0001130,4.48e-08,5;UBERON:0001066,4.48e-08,5;UBERON:0001468,4.48e-08,5;UBERON:0002242,9.31e-08,3;UBERON:0003068,9.31e-08,3;UBERON:0002328,9.31e-08,3;UBERON:0004880,9.31e-08,3;UBERON:0001434,9.57e-08,100;UBERON:0004905,2.87e-07,8;UBERON:0000982,2.87e-07,8;UBERON:0004770,2.87e-07,8;UBERON:0000926,8.02e-07,315;UBERON:0004120,8.02e-07,315;UBERON:0006603,8.02e-07,315 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.281908808191942,0,0,0,0,0.631719873426831,0.261185628199839,0.245733936501509,0,0,0,1.8564952944007,0.662794751455832,0.672325146451775,0,0,0,0,0.204000691244253,0,0,0.273748850145768,0.125542639594803,0,0,0,1.18009283054671,0.383829398097213,0,0,0,0.369754010166788,0,0,0.293600439334847,0,1.60435557976113,1.95309783644267,0.223915474239924,0,0,0.290796477559129,0.377875943688809,0.242584061187816,1.39457422143411,0,0,0,0.512321413058201,0,1.37898272294647,0,1.35426486594342,0.564727018627814,0,0.224723484445085,0.918251677112708,0.320929027076094,1.27867425159808,0,0.199463657621632,0,1.7412554317715,0.56738522469114,0.622822248995575,0,0,0,1.21079900526674,1.47311054395026,1.58231193720442,0.211255286311942,0,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0.400395987036012,0.574752439954483,0,0,0,0,0,0,0,0,1.37696839079683,1.57204305099666,2.87842098599313,0,0.32592226663359,0.473447805734733,1.94826728407911,0.111410456885174,0.589211814949674,0,0.270803863765016,0,0.130059347559878,0,0,0,0.593146252648242,0.267540828089713,0,0.113309342697566,0.766440987203842,0.34362744548263,0,0,0,0,0,0.127986611154418,1.24930726552346,0,0,1.20964045934839,2.94184215361858,2.02754165435919,0,0.670700859703636,0.383587685530591,1.44575660953827,2.00535164254356,1.15877215168659,2.3858578411533,0.486634870302636,0.189069634328136,0,0.175669571386252,0.130979075497713,0,0,0,0,0.26591592103773,0.476981248610684,0,0,0.39752481473341,0,0.694281003215189,0.56530794192401,0,0.275118041940067,0,0.258416759169329,0.35576626268671,0,0.402829317109147,0,0.488124115096339,0,0.81014194788176,0.17859945656816,0.22452937262617,0.225222960966644,0,0,0.366403487860815,0,0,0,0,0.759783069987479,1.19168262731897,1.14734648299525,1.77334191099179,0,1.06748995729705,0.24666754841716,0,0.134710672069688,0.163461903113459,0.151357427644931,1.15235184896,0.234321431833797,0,0,0.448346041655403,0.23486899728753,0.161872944368132,0,0.204154171254893,0.122834317311768,0,0,0.989067717114227,0.910161361938026,0,0.336672227908132,0.125118519871964,1.38532057742091,1.75591048352335,1.22595118319608,0.45071417671979,0,0.179389635688862,0.640672166455702,0.211931901159562,0.600182192168805,0.515262646192195,0.257640540045629,0.930584281657949,0.168776332241266,0.194874010322397,0.757301322732344,0.0920498986422993,0.323292113637624,1.42003837006646,0.403008392910561,1.01736355386293,0.193260853163297,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0.928735856063958,2.16563844500876,0.354920400119532,0.168584690078102,0.241011029883482,0,0,0,0.269662616320329,0.392442930250692,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0.469634776943287,0.721832238805369,0.462985512576611,0.380508304469197,0,0.858486162094873,0,0.234004265139238,0,0,0,0.283550194484773,0,0,0,0,0,0.414656231081544,0.144119953416961,0.6312121671319,0,0,0,0,0,0,0,0,0,0.22001485746285,0,0,0,0.531876233169741,1.04007436911366,0.257207374262142,2.83698264046557,0.799266537048298,0.57191197463259,0,0,0.325736184293735,0,0,0,0,0.399891964728228,0,0,0,1.19812427745791,1.14861935834114,0,1.30303176000821,1.2328579353023,0,0,0.591092280605782,1.72502059887614,2.18183161675572,0,0,0,0,0,0,0,0,1.2269149171914,2.00068208423871,1.08506009479894,0.415941723061614,0.535286966391485,0.946214490203608,1.28855556491985,0.902838299183157,0,0,1.32845119707087,2.39679919104214,0.0868836144680828,0,0,0.413536052245775,0.647142602455851,0.426910231213777,0,0,0,0.744323423456331,0.153461973288062,0.561320188866147,0.768834895534206,0.511707249066704,1.28683136914886,0,0,0.177561725313127,0.246381468041427,0,0,0.120859449591622,0,0,0.68888668898764,0.364182336013434,0.262248829918848,0,0,0,0,0.105551628892876,0,0.340187410553031,0,0,0.541892875087706,0,0,0,0,0,0.261435451024901,0,0,0,0.103041011647722,0.183138929636687,0.082509499920588,0.574265537996172,0,1.6068392984416,0,0.308097234229289,0.15350367472613,0,0.107420244868274,0,0,0,0.165284915360978,0,0,0.10115778085555,2.32422774648643,0.31481234683064,0.6970372701606,0.616067160352178,0,0,0.55597265731176,0.286249773483982,0,0.316379424718726,0.38126038784765,1.27948895655667,0,0.636406495851874,0,0.359744915166629,0.54907405947211,0.353437207037059,0.606547444719948,0,0,0.48763373908959,0,0,0,0.424216295861138,1.13008116620243,1.65409603063837,0.66343897524122,1.75380354101505,1.15755106853338,0.655894752046633,0,0,0.281695602532241,0.143411352204052,0.687743287091848,0,0,1.05553817648832,0.329294892959902,0.379473173765715,0.349934720244983,0,0,0,0.282431402330337,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0.383010740264733,0,0,0,0,0.156679895773023,0,0.169291777801603,0,0,0,0,1.22896305723383,0.894704431569664,0.834245708559542,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0.23874448473769,0,0.307160702099232,0,0,0,0,0,3.58646378851925,0.276283915531148,0,0,0,1.24415835064723,0,0.179021174675609,0.511572370226872,0.3945736225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| 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| ||
|short_description=p1@LOC401093 | |short_description=p1@LOC401093 | ||
}} | }} |
Latest revision as of 02:07, 16 September 2015
Short description: | p1@LOC401093 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC401093_5end |
Coexpression cluster: | NA |
Association with transcript: | 16bp_to_NR_027037, NR_027038, uc011boe.1, uc011bof.1_5end |
EntrezGene: | LOC401093 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 9.31e-08 | 3 |
mesenchymal stem cell of the bone marrow | 3.72e-07 | 6 |
connective tissue cell | 3.85e-07 | 361 |
chondroblast | 5.55e-07 | 6 |
chondrocyte | 5.55e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.92e-09 | 167 |
intervertebral cartilage | 4.48e-08 | 5 |
symphysis | 4.48e-08 | 5 |
nonsynovial joint | 4.48e-08 | 5 |
fibrous joint | 4.48e-08 | 5 |
cartilaginous joint | 4.48e-08 | 5 |
developing mesenchymal condensation | 4.48e-08 | 5 |
pre-cartilage condensation | 4.48e-08 | 5 |
cartilaginous condensation | 4.48e-08 | 5 |
cartilage element | 4.48e-08 | 5 |
post-cranial axial skeletal system | 4.48e-08 | 5 |
vertebral column | 4.48e-08 | 5 |
intervertebral disk | 4.48e-08 | 5 |
intervertebral joint | 4.48e-08 | 5 |
nucleus pulposus | 9.31e-08 | 3 |
axial mesoderm | 9.31e-08 | 3 |
notochord | 9.31e-08 | 3 |
chordamesoderm | 9.31e-08 | 3 |
skeletal system | 9.57e-08 | 100 |
articulation | 2.87e-07 | 8 |
skeletal joint | 2.87e-07 | 8 |
articular system | 2.87e-07 | 8 |
mesoderm | 8.02e-07 | 315 |
mesoderm-derived structure | 8.02e-07 | 315 |
presumptive mesoderm | 8.02e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 4.71e-09 | 3 |
leiomyoma | 4.71e-09 | 3 |
benign neoplasm | 7.43e-07 | 4 |