FFCP PHASE1:Hg19::chr5:149535378..149535385,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5159 | |EntrezGene=5159 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8804 | |HGNC=8804 | ||
|TSSclassifier=strong | |||
|UniProt=E5RH16,P09619,Q59F04 | |UniProt=E5RH16,P09619,Q59F04 | ||
|association_with_transcript=36bp_to_ENST00000520579,NM_002609,uc003lro.2,uc003lrp.2,uc010jhd.2_5end | |association_with_transcript=36bp_to_ENST00000520579,NM_002609,uc003lro.2,uc003lrp.2,uc010jhd.2_5end | ||
|cluster_id=chr5:149535378..149535385,- | |||
|coexpression_cluster_id=C1528 | |coexpression_cluster_id=C1528 | ||
|description=CAGE_peak_5_at_PDGFRB_5end | |description=CAGE_peak_5_at_PDGFRB_5end | ||
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|ontology_enrichment_celltype=CL:0000055!6.80e-27!180;CL:0000057!2.13e-23!75;CL:0002620!1.20e-09!23;CL:0002334!9.56e-08!12;CL:0000183!1.28e-07!59 | |ontology_enrichment_celltype=CL:0000055!6.80e-27!180;CL:0000057!2.13e-23!75;CL:0002620!1.20e-09!23;CL:0002334!9.56e-08!12;CL:0000183!1.28e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002334;2.09e-10;12!CL:0000057;2.59e-10;73!CL:0002570;2.94e-08;8!CL:0002620;7.07e-08;23 | |ontology_enrichment_celltype_v019=CL:0002334;2.09e-10;12!CL:0000057;2.59e-10;73!CL:0002570;2.94e-08;8!CL:0002620;7.07e-08;23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.30e-24,76;CL:0002334,2.99e-10,12;CL:0002570,2.98e-08,8;CL:0002620,6.11e-08,23 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.18e-18!365;UBERON:0000914!1.01e-11!83;UBERON:0002329!1.01e-11!83;UBERON:0003077!1.01e-11!83;UBERON:0003059!1.01e-11!83;UBERON:0007282!1.01e-11!83;UBERON:0009618!1.01e-11!83;UBERON:0007285!1.01e-11!83;UBERON:0000481!2.80e-09!347;UBERON:0003102!3.52e-09!95;UBERON:0004290!4.18e-09!70;UBERON:0005256!5.41e-09!143;UBERON:0002199!2.25e-08!45;UBERON:0002416!2.25e-08!45;UBERON:0007023!5.53e-08!115;UBERON:0002100!1.37e-07!216;UBERON:0000033!2.28e-07!123;UBERON:0000153!2.74e-07!129;UBERON:0007811!2.74e-07!129;UBERON:0002200!6.20e-07!11;UBERON:0006876!6.20e-07!11;UBERON:0002097!7.85e-07!40;UBERON:0001013!8.71e-07!14;UBERON:0000486!9.12e-07!82 | |ontology_enrichment_uberon=UBERON:0000475!5.18e-18!365;UBERON:0000914!1.01e-11!83;UBERON:0002329!1.01e-11!83;UBERON:0003077!1.01e-11!83;UBERON:0003059!1.01e-11!83;UBERON:0007282!1.01e-11!83;UBERON:0009618!1.01e-11!83;UBERON:0007285!1.01e-11!83;UBERON:0000481!2.80e-09!347;UBERON:0003102!3.52e-09!95;UBERON:0004290!4.18e-09!70;UBERON:0005256!5.41e-09!143;UBERON:0002199!2.25e-08!45;UBERON:0002416!2.25e-08!45;UBERON:0007023!5.53e-08!115;UBERON:0002100!1.37e-07!216;UBERON:0000033!2.28e-07!123;UBERON:0000153!2.74e-07!129;UBERON:0007811!2.74e-07!129;UBERON:0002200!6.20e-07!11;UBERON:0006876!6.20e-07!11;UBERON:0002097!7.85e-07!40;UBERON:0001013!8.71e-07!14;UBERON:0000486!9.12e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.94e-09;14!UBERON:0003688;1.95e-07;6!UBERON:0002358;1.95e-07;6!UBERON:0003684;1.95e-07;6!UBERON:0001178;1.95e-07;6!UBERON:0002384;2.01e-07;198!UBERON:0000075;5.24e-07;16!UBERON:0006876;5.46e-07;11!UBERON:0002199;6.67e-07;46!UBERON:0002416;6.67e-07;46 | |ontology_enrichment_uberon_v019=UBERON:0001013;1.94e-09;14!UBERON:0003688;1.95e-07;6!UBERON:0002358;1.95e-07;6!UBERON:0003684;1.95e-07;6!UBERON:0001178;1.95e-07;6!UBERON:0002384;2.01e-07;198!UBERON:0000075;5.24e-07;16!UBERON:0006876;5.46e-07;11!UBERON:0002199;6.67e-07;46!UBERON:0002416;6.67e-07;46 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.11e-10,99;UBERON:0002199,1.47e-09,46;UBERON:0002416,1.47e-09,46;UBERON:0001013,1.81e-09,14;UBERON:0003104,5.87e-08,160;UBERON:0009142,5.87e-08,160;UBERON:0002097,2.23e-07,41;UBERON:0007524,2.56e-07,73;UBERON:0003688,2.71e-07,6;UBERON:0002358,2.71e-07,6;UBERON:0003684,2.71e-07,6;UBERON:0001178,2.71e-07,6;UBERON:0002329,5.07e-07,71;UBERON:0003059,5.07e-07,71;UBERON:0007282,5.07e-07,71;UBERON:0004290,5.07e-07,71;UBERON:0009618,5.07e-07,71;UBERON:0006876,5.42e-07,11;UBERON:0000075,6.92e-07,16;UBERON:0003077,8.40e-07,72;UBERON:0007285,8.40e-07,72 | |||
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| ||
|short_description=p5@PDGFRB | |short_description=p5@PDGFRB | ||
}} | }} |
Latest revision as of 03:07, 16 September 2015
Short description: | p5@PDGFRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PDGFRB_5end |
Coexpression cluster: | C1528_Mesenchymal_Pericytes_mesodermal_Adipocyte_Fibroblast_Multipotent_Hair |
Association with transcript: | 36bp_to_ENST00000520579, NM_002609, uc003lro.2, uc003lrp.2, uc010jhd.2_5end |
EntrezGene: | PDGFRB |
HGNC: | 8804 |
UniProt: | E5RH16P09619Q59F04 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.30e-24 | 76 |
preadipocyte | 2.99e-10 | 12 |
mesenchymal stem cell of adipose | 2.98e-08 | 8 |
skin fibroblast | 6.11e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.11e-10 | 99 |
integument | 1.47e-09 | 46 |
integumental system | 1.47e-09 | 46 |
adipose tissue | 1.81e-09 | 14 |
mesenchyme | 5.87e-08 | 160 |
entire embryonic mesenchyme | 5.87e-08 | 160 |
skin of body | 2.23e-07 | 41 |
dense mesenchyme tissue | 2.56e-07 | 73 |
omentum | 2.71e-07 | 6 |
peritoneum | 2.71e-07 | 6 |
abdominal cavity | 2.71e-07 | 6 |
visceral peritoneum | 2.71e-07 | 6 |
somite | 5.07e-07 | 71 |
presomitic mesoderm | 5.07e-07 | 71 |
presumptive segmental plate | 5.07e-07 | 71 |
dermomyotome | 5.07e-07 | 71 |
trunk paraxial mesoderm | 5.07e-07 | 71 |
vasculature of organ | 5.42e-07 | 11 |
subdivision of skeletal system | 6.92e-07 | 16 |
paraxial mesoderm | 8.40e-07 | 72 |
presumptive paraxial mesoderm | 8.40e-07 | 72 |