FFCP PHASE1:Hg19::chr2:241976174..241976202,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25992 | |EntrezGene=25992 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24696 | |HGNC=24696 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-434bp_to_ENST00000401644_5end | |association_with_transcript=-434bp_to_ENST00000401644_5end | ||
|cluster_id=chr2:241976174..241976202,+ | |||
|coexpression_cluster_id=C144 | |||
|description=CAGE_peak_7_at_SNED1_5end | |description=CAGE_peak_7_at_SNED1_5end | ||
|id=chr2:241976174..241976202,+ | |id=chr2:241976174..241976202,+ | ||
|ontology_enrichment_celltype=CL:0000542!1.88e-29!53;CL:0000051!1.88e-29!53;CL:0000838!6.53e-28!52;CL:0000945!1.97e-25!24;CL:0000826!1.97e-25!24;CL:0002087!4.90e-24!119;CL:0000236!3.07e-22!14;CL:0000738!1.94e-21!140;CL:0002031!7.71e-19!124;CL:0000988!5.34e-15!182;CL:0000037!8.89e-15!172;CL:0000566!8.89e-15!172;CL:0002032!1.88e-13!165;CL:0000837!1.88e-13!165;CL:0000791!1.06e-10!18;CL:0000789!1.06e-10!18;CL:0002420!1.06e-10!18;CL:0002419!1.06e-10!18;CL:0000790!1.06e-10!18;CL:0000084!1.53e-08!25;CL:0000827!1.53e-08!25;CL:0000624!1.64e-08!6;CL:0000080!4.86e-08!6 | |ontology_enrichment_celltype=CL:0000542!1.88e-29!53;CL:0000051!1.88e-29!53;CL:0000838!6.53e-28!52;CL:0000945!1.97e-25!24;CL:0000826!1.97e-25!24;CL:0002087!4.90e-24!119;CL:0000236!3.07e-22!14;CL:0000738!1.94e-21!140;CL:0002031!7.71e-19!124;CL:0000988!5.34e-15!182;CL:0000037!8.89e-15!172;CL:0000566!8.89e-15!172;CL:0002032!1.88e-13!165;CL:0000837!1.88e-13!165;CL:0000791!1.06e-10!18;CL:0000789!1.06e-10!18;CL:0002420!1.06e-10!18;CL:0002419!1.06e-10!18;CL:0000790!1.06e-10!18;CL:0000084!1.53e-08!25;CL:0000827!1.53e-08!25;CL:0000624!1.64e-08!6;CL:0000080!4.86e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000236;3.92e-33;13!CL:0000945;1.16e-17;24!CL:0000542;6.07e-15;53!CL:0000898;3.06e-13;3!CL:0000785;2.74e-10;1!CL:0000895;2.74e-10;1!CL:0000819;2.74e-10;1!CL:0000624;4.73e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,9.18e-31,14;CL:0000542,5.05e-19,53;CL:0000051,5.05e-19,53;CL:0000945,1.10e-17,24;CL:0000826,1.10e-17,24;CL:0000838,5.96e-16,52;CL:0000898,2.47e-13,3;CL:0000810,1.89e-10,1;CL:0000895,1.89e-10,1;CL:0002436,1.89e-10,1;CL:0002427,1.89e-10,1;CL:0002428,1.89e-10,1;CL:0002429,1.89e-10,1;CL:0002433,1.89e-10,1;CL:0002431,1.89e-10,1;CL:0002432,1.89e-10,1;CL:0000819,2.08e-10,1;CL:0002087,9.38e-08,115;CL:0000624,4.26e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;6.07e-15;53!CL:0002427;2.74e-10;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:12603;1.13e-10;1!DOID:0060073;2.74e-10;1!DOID:8675;2.74e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,1.08e-10,1;DOID:0060073,2.08e-10,1;DOID:8675,2.08e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!3.44e-11!15;UBERON:0000179!3.44e-11!15;UBERON:0000463!3.44e-11!15;UBERON:0002193!6.60e-09!112;UBERON:0002390!6.77e-09!102;UBERON:0003061!6.77e-09!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0.764134057479513,0.738905305049512,0.865818594450472,0.393364276848904,0,0.309632246632152,0,0,0,0,0,0,0,0,0.217010870715852,0.223915474239924,0.32389366601898,0,0.145398238779565,0.377875943688809,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0.290209238628584,0.56738522469114,0,0,0.521482918420201,0,0,0.736555271975129,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0.546138611262131,0.889509253863555,2.13365111283254,2.40237592221607,0.574752439954483,1.32208974556972,0.954053754535364,1.1384259382189,0.587237189370939,1.14681968437569,0,0.560508562981536,0,0.983548850569165,0.393010762749165,0.616804496998528,0.501559486172034,0,0.473447805734733,0,10.3611724903211,6.18672405697158,4.65221178625604,5.95768500283034,1.15282187753108,0.910415432919148,1.15106533222573,1.10540007114339,0.869409257205157,0.14828656316206,0.267540828089713,0,6.23201384836614,1.53288197440768,0,0.759059076058509,0.637130828648193,0,0.950452044448374,0.451725357233318,0,0,0,0,0.403213486449465,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,0,0,0,0,0,0,0,0.241011029883482,0.441175890929576,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.215714200818617,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,0.952927101831156,0.822724546172388,0,0,0,0,0,0,3.15865397713722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.00897137549192,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0.472775363535873,0,0,0,0,0,0,0,0,0,1.0893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35920332841153,1.8795950910982,0,0,0,1.45963831372533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365446585430928,0.246346371159628,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0.197611631897944,0.60896299190448,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0.378806010550178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344429959321631,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,1.1829261750188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0.455324382702595,0,0.230467975111559,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0.924351257262837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.869046000142011,0,0,0.808468755832877,0,0,0.740872583160463,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 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| ||
|short_description=p7@SNED1 | |short_description=p7@SNED1 | ||
}} | }} |
Latest revision as of 09:23, 16 September 2015
Short description: | p7@SNED1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SNED1_5end |
Coexpression cluster: | C144_CD4_tonsil_NK_appendix_CD8_splenic_mycosis |
Association with transcript: | -434bp_to_ENST00000401644_5end |
EntrezGene: | SNED1 |
HGNC: | 24696 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 9.18e-31 | 14 |
lymphocyte | 5.05e-19 | 53 |
common lymphoid progenitor | 5.05e-19 | 53 |
lymphocyte of B lineage | 1.10e-17 | 24 |
pro-B cell | 1.10e-17 | 24 |
lymphoid lineage restricted progenitor cell | 5.96e-16 | 52 |
naive T cell | 2.47e-13 | 3 |
CD4-positive, alpha-beta thymocyte | 1.89e-10 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.89e-10 | 1 |
mature CD4 single-positive thymocyte | 1.89e-10 | 1 |
resting double-positive thymocyte | 1.89e-10 | 1 |
double-positive blast | 1.89e-10 | 1 |
CD69-positive double-positive thymocyte | 1.89e-10 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.89e-10 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.89e-10 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.89e-10 | 1 |
B-1 B cell | 2.08e-10 | 1 |
nongranular leukocyte | 9.38e-08 | 115 |
CD4-positive, alpha-beta T cell | 4.26e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 1.08e-10 | 1 |
lymphatic system cancer | 2.08e-10 | 1 |
lymphosarcoma | 2.08e-10 | 1 |