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FFCP PHASE1:Hg19::chr19:16771936..16772021,+: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=79041
|EntrezGene=79041
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=28462
|HGNC=28462
|TSSclassifier=strong
|UniProt=Q9H6F2
|UniProt=Q9H6F2
|association_with_transcript=0bp_to_ENST00000187762,NM_024074,uc002nes.2_5end
|association_with_transcript=0bp_to_ENST00000187762,NM_024074,uc002nes.2_5end
|cluster_id=chr19:16771936..16772021,+
|coexpression_cluster_id=C31
|coexpression_cluster_id=C31
|description=CAGE_peak_1_at_TMEM38A_5end
|description=CAGE_peak_1_at_TMEM38A_5end
Line 9: Line 14:
|ontology_enrichment_celltype=CL:0000945!5.14e-07!24;CL:0000826!5.14e-07!24
|ontology_enrichment_celltype=CL:0000945!5.14e-07!24;CL:0000826!5.14e-07!24
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019_2=CL:0000945,6.33e-07,24;CL:0000826,6.33e-07,24
|ontology_enrichment_development_v019=UBERON:0006601;3.82e-12;82!UBERON:0002532;3.82e-07;206!UBERON:0010316;3.82e-07;206
|ontology_enrichment_development_v019=UBERON:0006601;3.82e-12;82!UBERON:0002532;3.82e-07;206!UBERON:0010316;3.82e-07;206
|ontology_enrichment_disease=DOID:0050687!1.58e-07!143;DOID:305!2.91e-07!106
|ontology_enrichment_disease=DOID:0050687!1.58e-07!143;DOID:305!2.91e-07!106
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=DOID:0050687,8.16e-08,143;DOID:305,1.22e-07,106
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|ontology_enrichment_uberon=UBERON:0007023!4.47e-32!115;UBERON:0005743!5.76e-23!86;UBERON:0001049!7.46e-23!57;UBERON:0005068!7.46e-23!57;UBERON:0006241!7.46e-23!57;UBERON:0007135!7.46e-23!57;UBERON:0001017!4.32e-22!82;UBERON:0000073!7.96e-22!94;UBERON:0001016!7.96e-22!94;UBERON:0000955!2.69e-21!69;UBERON:0006238!2.69e-21!69;UBERON:0002346!5.86e-20!90;UBERON:0002616!2.41e-19!59;UBERON:0003080!3.17e-19!42;UBERON:0002780!5.35e-19!41;UBERON:0001890!5.35e-19!41;UBERON:0006240!5.35e-19!41;UBERON:0003075!1.11e-18!86;UBERON:0007284!1.11e-18!86;UBERON:0001893!1.04e-15!34;UBERON:0002020!1.25e-15!34;UBERON:0003528!1.25e-15!34;UBERON:0003056!3.45e-15!61;UBERON:0002791!4.10e-15!33;UBERON:0001869!6.40e-15!32;UBERON:0000153!3.13e-14!129;UBERON:0007811!3.13e-14!129;UBERON:0000033!4.99e-14!123;UBERON:0000924!5.91e-12!173;UBERON:0006601!5.91e-12!173;UBERON:0002619!9.08e-12!22;UBERON:0000956!3.76e-11!25;UBERON:0000203!3.76e-11!25;UBERON:0004121!5.27e-11!169;UBERON:0001950!5.39e-11!20;UBERON:0004111!5.70e-10!241;UBERON:0000025!7.01e-10!194;UBERON:0000481!6.90e-09!347;UBERON:0000477!1.15e-08!286;UBERON:0000483!6.16e-07!309
|ontology_enrichment_uberon_v019=UBERON:0002780;4.57e-15;41!UBERON:0001890;4.57e-15;41!UBERON:0001893;4.86e-15;34!UBERON:0001869;5.17e-15;32!UBERON:0003528;7.02e-15;34!UBERON:0002020;7.02e-15;34!UBERON:0002791;8.10e-15;32!UBERON:0000073;2.36e-13;53!UBERON:0002616;2.36e-13;53!UBERON:0002619;4.74e-13;22!UBERON:0000956;2.16e-12;25!UBERON:0000203;2.16e-12;25!UBERON:0001950;3.60e-12;20!UBERON:0000955;2.77e-11;68!UBERON:0001017;2.50e-10;75!UBERON:0007023;1.90e-09;114!UBERON:0001016;5.42e-09;83
|ontology_enrichment_uberon_v019=UBERON:0002780;4.57e-15;41!UBERON:0001890;4.57e-15;41!UBERON:0001893;4.86e-15;34!UBERON:0001869;5.17e-15;32!UBERON:0003528;7.02e-15;34!UBERON:0002020;7.02e-15;34!UBERON:0002791;8.10e-15;32!UBERON:0000073;2.36e-13;53!UBERON:0002616;2.36e-13;53!UBERON:0002619;4.74e-13;22!UBERON:0000956;2.16e-12;25!UBERON:0000203;2.16e-12;25!UBERON:0001950;3.60e-12;20!UBERON:0000955;2.77e-11;68!UBERON:0001017;2.50e-10;75!UBERON:0007023;1.90e-09;114!UBERON:0001016;5.42e-09;83
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|short_description=p1@TMEM38A
|short_description=p1@TMEM38A
}}
}}

Latest revision as of 10:34, 16 September 2015

Short description:p1@TMEM38A
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_1_at_TMEM38A_5end
Coexpression cluster:C31_skeletal_tongue_diaphragm_throat_penis_skin_trachea
Association with transcript: 0bp_to_ENST00000187762, NM_024074, uc002nes.2_5end
EntrezGene:TMEM38A
HGNC: 28462
UniProt: Q9H6F2
Genome view:ZENBU


View on UCSC genome browser

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CAGE Expression



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  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

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