FFCP PHASE1:Hg19::chr1:120311553..120311555,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3158 | |EntrezGene=3158 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5008 | |HGNC=5008 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z8R3,P54868 | |UniProt=B7Z8R3,P54868 | ||
|association_with_transcript=0bp_to_NM_001166107,NM_005518_5end | |association_with_transcript=0bp_to_NM_001166107,NM_005518_5end | ||
|cluster_id=chr1:120311553..120311555,- | |||
|coexpression_cluster_id=C129 | |coexpression_cluster_id=C129 | ||
|description=CAGE_peak_2_at_HMGCS2_5end | |description=CAGE_peak_2_at_HMGCS2_5end | ||
|id=chr1:120311553..120311555,- | |id=chr1:120311553..120311555,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.77e-11;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.45e-11,12 | |||
|ontology_enrichment_development_v019=UBERON:0010226;9.99e-16;1 | |||
|ontology_enrichment_disease=DOID:114!2.79e-10!2 | |ontology_enrichment_disease=DOID:114!2.79e-10!2 | ||
|ontology_enrichment_disease_v019=DOID:114;2.00e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,2.00e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.56e-13!129;UBERON:0004185!1.56e-13!129;UBERON:0005409!1.68e-13!35;UBERON:0007023!3.36e-11!115;UBERON:0001007!2.08e-10!155;UBERON:0001555!2.08e-10!155;UBERON:0007026!2.08e-10!155;UBERON:0004119!3.60e-10!169;UBERON:0000925!3.60e-10!169;UBERON:0006595!3.60e-10!169;UBERON:0000160!1.51e-09!27;UBERON:0002107!1.04e-08!19;UBERON:0006925!1.04e-08!19;UBERON:0008836!1.04e-08!19;UBERON:0001155!1.13e-08!9;UBERON:0005057!4.03e-08!26;UBERON:0008835!1.99e-07!22;UBERON:0003894!1.99e-07!22;UBERON:0000059!4.22e-07!11;UBERON:0009854!4.47e-07!23;UBERON:0003929!6.83e-07!54;UBERON:0002365!9.79e-07!31;UBERON:0002330!9.79e-07!31 | |ontology_enrichment_uberon=UBERON:0004921!1.56e-13!129;UBERON:0004185!1.56e-13!129;UBERON:0005409!1.68e-13!35;UBERON:0007023!3.36e-11!115;UBERON:0001007!2.08e-10!155;UBERON:0001555!2.08e-10!155;UBERON:0007026!2.08e-10!155;UBERON:0004119!3.60e-10!169;UBERON:0000925!3.60e-10!169;UBERON:0006595!3.60e-10!169;UBERON:0000160!1.51e-09!27;UBERON:0002107!1.04e-08!19;UBERON:0006925!1.04e-08!19;UBERON:0008836!1.04e-08!19;UBERON:0001155!1.13e-08!9;UBERON:0005057!4.03e-08!26;UBERON:0008835!1.99e-07!22;UBERON:0003894!1.99e-07!22;UBERON:0000059!4.22e-07!11;UBERON:0009854!4.47e-07!23;UBERON:0003929!6.83e-07!54;UBERON:0002365!9.79e-07!31;UBERON:0002330!9.79e-07!31 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;7.29e-19;19!UBERON:0006925;7.29e-19;19!UBERON:0002084;9.99e-16;1!UBERON:0002082;9.99e-16;1!UBERON:0002423;2.38e-14;25!UBERON:0002365;1.49e-11;31!UBERON:0002330;1.49e-11;31!UBERON:0002368;4.91e-10;33!UBERON:0000949;2.28e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,6.52e-19,19;UBERON:0006925,6.52e-19,19;UBERON:0008836,6.52e-19,19;UBERON:0008835,2.42e-16,22;UBERON:0003894,2.42e-16,22;UBERON:0002084,9.99e-16,1;UBERON:0002082,9.99e-16,1;UBERON:0010226,9.99e-16,1;UBERON:0009854,1.24e-15,23;UBERON:0007499,2.19e-14,25;UBERON:0009497,2.19e-14,25;UBERON:0000015,2.19e-14,25;UBERON:0002423,2.19e-14,25;UBERON:0006235,2.19e-14,25;UBERON:0004161,2.19e-14,25;UBERON:0009856,7.82e-14,26;UBERON:0002365,1.33e-11,31;UBERON:0002330,1.33e-11,31;UBERON:0002368,2.83e-10,35;UBERON:0000949,5.60e-08,45 | |||
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|short_description=p2@HMGCS2 | |short_description=p2@HMGCS2 | ||
}} | }} |
Latest revision as of 12:26, 16 September 2015
Short description: | p2@HMGCS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HMGCS2_5end |
Coexpression cluster: | C129_liver_Hepatocyte_colon_duodenum_temporal_testicular_small |
Association with transcript: | 0bp_to_NM_001166107, NM_005518_5end |
EntrezGene: | HMGCS2 |
HGNC: | 5008 |
UniProt: | B7Z8R3P54868 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.45e-11 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 6.52e-19 | 19 |
digestive gland | 6.52e-19 | 19 |
liver bud | 6.52e-19 | 19 |
hepatic diverticulum | 2.42e-16 | 22 |
liver primordium | 2.42e-16 | 22 |
heart left ventricle | 9.99e-16 | 1 |
cardiac ventricle | 9.99e-16 | 1 |
future cardiac ventricle | 9.99e-16 | 1 |
digestive tract diverticulum | 1.24e-15 | 23 |
epithelial sac | 2.19e-14 | 25 |
epithelium of foregut-midgut junction | 2.19e-14 | 25 |
anatomical boundary | 2.19e-14 | 25 |
hepatobiliary system | 2.19e-14 | 25 |
foregut-midgut junction | 2.19e-14 | 25 |
septum transversum | 2.19e-14 | 25 |
sac | 7.82e-14 | 26 |
exocrine gland | 1.33e-11 | 31 |
exocrine system | 1.33e-11 | 31 |
endocrine gland | 2.83e-10 | 35 |
endocrine system | 5.60e-08 | 45 |
Ontology term | p-value | n |
---|---|---|
heart disease | 2.00e-08 | 2 |