FFCP PHASE1:Hg19::chr9:139652713..139652718,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=138307 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27038 | |||
|TSSclassifier=strong | |||
|UniProt=Q6JVE9,Q6ZT51 | |||
|association_with_transcript=12bp_to_NM_178469,uc004cjb.1,uc004cjc.1_5end | |||
|cluster_id=chr9:139652713..139652718,- | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_8_at_LCN8_5end | |||
|id=chr9:139652713..139652718,- | |||
|ontology_enrichment_celltype=CL:0000236!9.57e-15!14;CL:0000945!1.06e-08!24;CL:0000826!1.06e-08!24 | |||
|ontology_enrichment_celltype_v019=CL:0000236;5.70e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,2.00e-08,14 | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.74e-50;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006947!6.52e-18!3;UBERON:0004054!6.52e-18!3;UBERON:0001301!3.08e-14!1;UBERON:0007029!4.53e-14!1;UBERON:0001000!6.65e-14!1;UBERON:0005352!6.65e-14!1;UBERON:0005904!1.11e-13!4;UBERON:0002902!1.25e-13!1;UBERON:0009899!1.25e-13!1;UBERON:0007190!1.42e-13!1;UBERON:0002372!1.61e-13!1;UBERON:0001961!1.61e-13!1;UBERON:0001744!1.61e-13!1;UBERON:0001735!1.61e-13!1;UBERON:0002581!1.83e-13!1;UBERON:0007023!1.23e-11!115;UBERON:0003135!6.75e-11!11;UBERON:0000200!4.55e-09!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;9.37e-99;1!UBERON:0006947;4.27e-34;3!UBERON:0004054;4.27e-34;3!UBERON:0005904;5.56e-26;4!UBERON:0000058;2.73e-11;10!UBERON:0003135;2.16e-10;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,9.37e-99,1;UBERON:0006947,4.27e-34,3;UBERON:0004054,4.27e-34,3;UBERON:0005904,5.56e-26,4;UBERON:0005103,9.39e-14,8;UBERON:0000083,9.39e-14,8;UBERON:0009201,9.39e-14,8;UBERON:0006553,9.39e-14,8;UBERON:0003074,9.39e-14,8;UBERON:0003060,9.39e-14,8;UBERON:0000080,2.19e-12,9;UBERON:0002120,2.19e-12,9;UBERON:0004875,2.19e-12,9;UBERON:0005721,2.19e-12,9;UBERON:0005754,2.19e-12,9;UBERON:0007297,2.19e-12,9;UBERON:0003135,2.16e-10,11;UBERON:0004876,2.16e-10,11;UBERON:0003887,1.22e-09,12;UBERON:0006555,1.45e-07,16;UBERON:0004819,1.45e-07,16 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,1.70763890732835,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0,0,0.28853842595289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331737779793674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.36816670605075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p8@LCN8 | |||
}} |
Latest revision as of 13:13, 16 September 2015
Short description: | p8@LCN8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LCN8_5end |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | 12bp_to_NM_178469, uc004cjb.1, uc004cjc.1_5end |
EntrezGene: | LCN8 |
HGNC: | 27038 |
UniProt: | Q6JVE9Q6ZT51 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 2.00e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
epididymis | 9.37e-99 | 1 |
male genital duct | 4.27e-34 | 3 |
internal male genitalia | 4.27e-34 | 3 |
duct of male reproductive system | 5.56e-26 | 4 |
mesonephric epithelium | 9.39e-14 | 8 |
mesonephric tubule | 9.39e-14 | 8 |
nephric duct | 9.39e-14 | 8 |
renal duct | 9.39e-14 | 8 |
mesonephric duct | 9.39e-14 | 8 |
pronephric duct | 9.39e-14 | 8 |
mesonephros | 2.19e-12 | 9 |
pronephros | 2.19e-12 | 9 |
nephrogenic cord | 2.19e-12 | 9 |
pronephric mesoderm | 2.19e-12 | 9 |
rostral part of nephrogenic cord | 2.19e-12 | 9 |
presumptive pronephric mesoderm | 2.19e-12 | 9 |
male reproductive organ | 2.16e-10 | 11 |
urogenital ridge | 2.16e-10 | 11 |
intraembryonic coelom | 1.22e-09 | 12 |
excretory tube | 1.45e-07 | 16 |
kidney epithelium | 1.45e-07 | 16 |