FFCP PHASE1:Hg19::chr17:59477275..59477286,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:59477275..59477286,+
|short_description=p3@TBX2
|description=CAGE_peak_3_at_TBX2_5end
|association_with_transcript=4bp_to_ENST00000419047_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6909 | |EntrezGene=6909 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11597 | |HGNC=11597 | ||
|TSSclassifier=strong | |||
|UniProt=F8WCM9 | |UniProt=F8WCM9 | ||
|association_with_transcript=4bp_to_ENST00000419047_5end | |||
|cluster_id=chr17:59477275..59477286,+ | |||
|coexpression_cluster_id=C2425 | |||
|description=CAGE_peak_3_at_TBX2_5end | |||
|id=chr17:59477275..59477286,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.58e-24!180;CL:0000183!9.60e-13!59;CL:0000680!3.30e-12!57;CL:0000056!3.30e-12!57;CL:0000355!3.30e-12!57;CL:0000187!9.91e-12!54;CL:0000192!1.10e-10!42;CL:0000514!1.10e-10!42;CL:0000057!9.52e-10!75;CL:0000393!2.68e-09!60;CL:0000211!2.68e-09!60;CL:0000075!6.12e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000192;1.60e-08;43!CL:0000187;8.80e-08;55!CL:0000075;1.60e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.27e-13,58;CL:0000056,3.27e-13,58;CL:0000355,3.27e-13,58;CL:0000187,1.30e-12,55;CL:0000192,2.75e-12,43;CL:0000514,2.75e-12,43;CL:0000393,5.57e-10,61;CL:0000211,5.57e-10,61;CL:0000075,1.19e-07,27 | |||
|ontology_enrichment_development_v019=CL:0000514;1.60e-08;43!CL:0000355;5.71e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.08e-19!365;UBERON:0000481!1.48e-18!347;UBERON:0000914!1.14e-14!83;UBERON:0002329!1.14e-14!83;UBERON:0003077!1.14e-14!83;UBERON:0003059!1.14e-14!83;UBERON:0007282!1.14e-14!83;UBERON:0009618!1.14e-14!83;UBERON:0007285!1.14e-14!83;UBERON:0002100!1.55e-14!216;UBERON:0005256!5.48e-14!143;UBERON:0004290!2.79e-13!70;UBERON:0002385!9.35e-13!63;UBERON:0001015!9.35e-13!63;UBERON:0000383!9.35e-13!63;UBERON:0001134!3.45e-12!61;UBERON:0002036!3.45e-12!61;UBERON:0003082!3.45e-12!61;UBERON:0003104!4.08e-11!238;UBERON:0009142!4.08e-11!238;UBERON:0000486!1.04e-09!82;UBERON:0000483!1.95e-09!309;UBERON:0000119!2.85e-09!312;UBERON:0000468!8.73e-09!659;UBERON:0007023!7.70e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.39e-15,160;UBERON:0009142,1.39e-15,160;UBERON:0002329,1.10e-14,71;UBERON:0003059,1.10e-14,71;UBERON:0007282,1.10e-14,71;UBERON:0004290,1.10e-14,71;UBERON:0009618,1.10e-14,71;UBERON:0007524,1.16e-14,73;UBERON:0007503,2.10e-14,78;UBERON:0005256,2.65e-14,122;UBERON:0003077,3.18e-14,72;UBERON:0007285,3.18e-14,72;UBERON:0002385,4.02e-14,64;UBERON:0001015,4.02e-14,64;UBERON:0000383,4.02e-14,64;UBERON:0001134,1.97e-13,62;UBERON:0002036,1.97e-13,62;UBERON:0003082,1.97e-13,62;UBERON:0002100,7.17e-13,199;UBERON:0000486,1.44e-10,83;UBERON:0000490,2.97e-08,148 | |||
|phase1_expression=2.36181893051724,2.35510576280081,1.40954404095971,1.0007329835313,2.23480547213644,0,2.53299878168311,6.31719873426831,2.35067065379855,4.91467873003018,1.39560233594486,0,0,0.866364470720326,1.98838425436749,0,0.602694528023977,0,0,0.246242116153576,0,1.25381888591235,0.572471974262113,0.273748850145768,1.00434111675842,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.895037932904712,7.59022220007589,11.0294340339896,13.7604193012783,0,4.86634870302636,2.83604451492204,3.1042115644759,2.81071314218003,9.43049343583531,0,0,0,0,0,0,0,0,0,1.72046919021225,0,0,0,0,0,0,1.42306505074684,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0.25326102332916,0.264818361626438,0.286836620748814,2.4826786753885,2.24271040056923,3.20246987189115,1.2333377420858,2.48968828319813,0.538842688278752,0.163461903113459,1.21085942115945,0.576175924479999,1.17160715916898,6.55536161343673,6.27519003698894,12.5536891663513,0.939475989150119,2.26622122115384,1.40450806702248,5.10385428137233,8.84407084644729,4.95963749643674,15.4440371446667,23.4903582814629,0,5.03032699271367,5.89176398839232,7.88246675193374,2.77064115484183,5.70670907145089,3.0648779579902,24.3385655428687,0.680593098960126,1.4351170855109,0.85422955527427,0.635795703478686,0.300091096084402,0.618315175430633,0.772921620136887,1.8611685633159,0.843881661206331,0.389748020644795,0.504867548488229,0.920498986422993,0.323292113637624,1.06502877754984,1.30977727695932,3.89989362314122,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,6.90674606762403,3.71494342425583,0.721879481669586,0.118306800039844,0,0,0,0,0,0.134831308160164,0,0,0,4.20725321410337,1.2347220339942,4.41026134156626,0,0,2.95394953340702,0,0.122988438543114,1.88724591328378,0,0,0,0,3.9096996637239,20.7986957055916,8.6598805215164,7.9991979432803,3.17003474436719,0,0,0,13.4334747653077,12.8772924314231,0,0,0,0,0,0,0.268675568108545,0.290633938513962,0.766765358330422,0,0,0,0,0,4.63534628332834,34.7609467258033,50.4035023003202,23.9501424431787,16.4523988325318,12.9147514872885,15.7204537946818,0.448524337381443,0,0.66004457238855,2.19761916788222,32.1890801266694,14.370146793452,6.11657668145202,3.12022310734098,7.9734286021264,2.83698264046557,8.79193190753128,8.86463560680515,10.3098105024374,4.11620168390384,11.7265026345745,8.5294067698211,5.543663110534,0.301439377059586,0.871533458600294,0.199945982364114,0,0,0,0.958499421966331,1.14861935834114,1.42636905040718,1.73737568001095,1.64381058040307,1.43248770591916,0,0,0,0,0.76228387266739,1.30139853857622,0,0.167516265334349,0.637938751653163,0,0,0,1.10422342547226,0.500170521059677,2.44138521329762,1.87173775377726,3.03329280955175,2.36553622550902,2.57711112983969,1.50473049863859,11.3703752027992,6.2083842775503,3.98535359121262,4.24049087645917,14.1620291582975,10.1816601880625,11.6668764095691,0,0,0,0,1.66435439510497,2.11673205330776,0.992431231275107,0.767309866440312,2.80660094433074,0.512556597022804,0.511707249066704,1.12597744800525,0,5.08891989548763,6.92490728721196,5.91315523299426,4.67328986265259,5.57809816607804,0.483437798366489,0,0,6.31479464905337,11.8359259204366,10.7522020266728,0.902399225814824,0.308061348417659,1.56869953835371,0,0.105551628892876,0,0,0,1.54227252690289,2.43851793789468,3.51182841698397,0.254876273045038,2.49322802678617,0.223874754722178,0,0,0.512900250232778,0.328014645699706,0,8.55240396676095,1.37354197227515,1.40266149865,1.14853107599234,0,0,3.0934629853479,2.31072925671967,1.68854042198743,2.75673144969061,0.214840489736547,2.32026710262766,4.34655799822115,0.712256285173899,0,0,0,0,1.85938219718914,0.94443704049192,4.8792608911242,0.924100740528266,3.72614221221915,1.73986598415015,0.9266210955196,1.00187420719394,2.232950216158,4.42931194606216,2.85945290885737,22.263107844086,13.6940476170855,7.31867470229655,2.35484592059769,6.47540847299933,4.11805544604082,4.94812089851883,5.25674452090622,1.58510321173008,2.94880919367287,10.727942259971,2.92456187557541,2.11300293513511,4.64099698787152,5.09059555033366,0,3.30819206127675,2.65375590096488,4.82295973779139,9.260408548267,19.676842561399,4.05820753925408,5.5768229657955,2.81695602532241,3.58528380510129,3.92996164052485,7.133421029625,8.86902660176495,1.68886108238131,0.658589785919804,5.31262443272001,15.3971276907792,0,0,0,10.2616742846689,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,1.1750647824022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0.307240764308458,0,0.500547425135725,0,0,0,0,0,0,0,2.93016358543788,0.121360521749513,0,0,0.23874448473769,0.890894042497916,0,0.994147647766298,0.140669416410513,1.44701316529778,0,0,5.57894367102995,0.828851746593443,0,0.20453736500431,0,1.55519793830904,0,0,0,7.39825542277002,0,4.44547960578548,0.969332746095218,1.11321717794222,0,6.77112178821606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| ||
|short_description=p3@TBX2 | |||
}} | }} |
Latest revision as of 15:18, 16 September 2015
Short description: | p3@TBX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TBX2_5end |
Coexpression cluster: | C2425_MCF7_Melanocyte_normal_Fibroblast_rhabdomyosarcoma_Smooth_lung |
Association with transcript: | 4bp_to_ENST00000419047_5end |
EntrezGene: | TBX2 |
HGNC: | 11597 |
UniProt: | F8WCM9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.27e-13 | 58 |
myoblast | 3.27e-13 | 58 |
multi-potent skeletal muscle stem cell | 3.27e-13 | 58 |
muscle cell | 1.30e-12 | 55 |
smooth muscle cell | 2.75e-12 | 43 |
smooth muscle myoblast | 2.75e-12 | 43 |
electrically responsive cell | 5.57e-10 | 61 |
electrically active cell | 5.57e-10 | 61 |
columnar/cuboidal epithelial cell | 1.19e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.39e-15 | 160 |
entire embryonic mesenchyme | 1.39e-15 | 160 |
somite | 1.10e-14 | 71 |
presomitic mesoderm | 1.10e-14 | 71 |
presumptive segmental plate | 1.10e-14 | 71 |
dermomyotome | 1.10e-14 | 71 |
trunk paraxial mesoderm | 1.10e-14 | 71 |
dense mesenchyme tissue | 1.16e-14 | 73 |
epithelial vesicle | 2.10e-14 | 78 |
trunk mesenchyme | 2.65e-14 | 122 |
paraxial mesoderm | 3.18e-14 | 72 |
presumptive paraxial mesoderm | 3.18e-14 | 72 |
muscle tissue | 4.02e-14 | 64 |
musculature | 4.02e-14 | 64 |
musculature of body | 4.02e-14 | 64 |
skeletal muscle tissue | 1.97e-13 | 62 |
striated muscle tissue | 1.97e-13 | 62 |
myotome | 1.97e-13 | 62 |
trunk | 7.17e-13 | 199 |
multilaminar epithelium | 1.44e-10 | 83 |
unilaminar epithelium | 2.97e-08 | 148 |