Personal tools

FFCP PHASE1:Hg19::chr9:139940414..139940423,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=56654
|EntrezGene=56654
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=7899
|HGNC=7899
|TSSclassifier=strong
|UniProt=
|UniProt=
|association_with_transcript=84bp_to_ENST00000488145_5end
|association_with_transcript=84bp_to_ENST00000488145_5end
|cluster_id=chr9:139940414..139940423,-
|description=CAGE_peak_7_at_NPDC1_5end
|description=CAGE_peak_7_at_NPDC1_5end
|id=chr9:139940414..139940423,-
|id=chr9:139940414..139940423,-
|ontology_enrichment_celltype=
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019=CL:0000511;2.12e-08;1!CL:0002625;2.12e-08;1!CL:0000216;2.12e-08;1!CL:0002591;2.12e-08;1!CL:0000062;7.06e-08;9!CL:0000359;1.85e-07;32!CL:0002595;8.89e-07;5
|ontology_enrichment_celltype_v019_2=CL:0000511,1.27e-08,1;CL:0002625,1.27e-08,1;CL:0000216,1.27e-08,1;CL:0002591,2.46e-08,1;CL:0000359,1.49e-07,32
|ontology_enrichment_development_v019=UBERON:0000358;7.83e-09;1!UBERON:0010227;2.12e-08;1
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0007023!3.81e-15!115;UBERON:0004111!9.86e-10!241;UBERON:0000025!1.42e-08!194;UBERON:0000477!8.93e-08!286;UBERON:0001981!1.96e-07!60;UBERON:0007500!1.96e-07!60;UBERON:0004537!1.96e-07!60;UBERON:0006965!1.96e-07!60;UBERON:0001049!4.00e-07!57;UBERON:0005068!4.00e-07!57;UBERON:0006241!4.00e-07!57;UBERON:0007135!4.00e-07!57;UBERON:0000475!5.92e-07!365
|ontology_enrichment_uberon_v019=UBERON:0002081;1.61e-15;2!UBERON:0004151;1.19e-10;3!UBERON:0002134;7.83e-09;1!UBERON:0002171;7.83e-09;1!UBERON:0005208;7.83e-09;1!UBERON:0006518;7.83e-09;1!UBERON:0008949;7.83e-09;1!UBERON:0004145;7.83e-09;1!UBERON:0005946;7.83e-09;1!UBERON:0000101;7.83e-09;1!UBERON:0005965;7.83e-09;1!UBERON:0002167;7.83e-09;1!UBERON:0002078;7.83e-09;1!UBERON:0002079;2.12e-08;1!UBERON:0001136;2.12e-08;1!UBERON:0001343;2.12e-08;1!UBERON:0004910;2.12e-08;1!UBERON:0004813;2.12e-08;1!UBERON:0003834;8.89e-07;5!UBERON:0001533;8.89e-07;5
|ontology_enrichment_uberon_v019_2=UBERON:0002081,1.67e-15,2;UBERON:0010227,1.67e-15,2;UBERON:0004151,1.22e-10,3;UBERON:0004145,1.48e-10,3;UBERON:0002171,7.01e-09,1;UBERON:0006518,7.01e-09,1;UBERON:0008949,7.01e-09,1;UBERON:0000101,7.01e-09,1;UBERON:0002167,7.01e-09,1;UBERON:0002134,9.46e-09,1;UBERON:0005208,9.46e-09,1;UBERON:0005946,9.46e-09,1;UBERON:0005965,9.46e-09,1;UBERON:0002078,9.46e-09,1;UBERON:0001136,1.27e-08,1;UBERON:0001343,1.27e-08,1;UBERON:0004910,1.27e-08,1;UBERON:0005154,1.27e-08,1;UBERON:0005295,1.27e-08,1;UBERON:0004813,1.27e-08,1;UBERON:0005297,1.27e-08,1;UBERON:0005294,1.27e-08,1;UBERON:0010141,1.27e-08,1;UBERON:0005891,1.27e-08,1;UBERON:0002079,1.84e-08,1;UBERON:0004872,5.56e-07,83
|phase1_expression=1.45342703416445,0.214100523890983,0.563817616383885,1.0007329835313,0,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616804496998528,0,0,0.473447805734733,0,0,0,0,0,0.25618263945135,0.260118695119756,0,0,0,0,0,0,0.113309342697566,0,0.34362744548263,0.506039384039006,0.318565414324097,0,0,0,0.127986611154418,0,0,0.821127996921047,0,0,0.144824403882799,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0.39752481473341,0,0.694281003215189,0,0.419499436209906,0.550236083880135,0.626984899610432,0,0.35576626268671,0,0.402829317109147,0.760272105718513,0.488124115096339,0,0,0.0892997282840798,0,0,1.53316637465883,0,0.183201743930407,0,0,0,0,0,0,0.573673241497627,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0.570471821544449,0.149448680551801,0,0,0,0,0,0.103325781175765,1.18800285728205,0,0,0,0,0,0,0.438977620880838,0,0,0.113432183160021,0,0,0,0.300091096084402,0.103052529238439,0,0.18611685633159,0,0,0,0.0920498986422993,0.161646056818812,0,0,0,0.193260853163297,0.272746120590835,0,0.121973706129595,0,0,0.207322110030741,0,0,0,0,0,0,0.721879481669586,0.236613600079688,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,1.77236972004421,0,0,0,0,1.1240175325762,0,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0.288239906833923,0,0,0.763976851116555,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0.410952645100767,0.179060963239896,0,0,0.215627574859517,0.128343036279748,1.01637849688985,0,0,0,0,0,0,0,0,0,0,0,0,0.315404830067869,0,2.70851489754947,2.27407504055985,1.03473071292505,0,0,0.260650843404249,0,0.343143423810856,0,0.215714200818617,0,0,0,0,0.496215615637554,0,0.561320188866147,0.384417447767103,0,0.804269605718038,0,0,0.177561725313127,0,0,0.232420756919918,0.362578348774867,0.601519410909855,0.460404944679482,0,0,0.655622074797121,0,0,0,0,0,0,0,0,1.54227252690289,0.270946437543853,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0.495854746082934,0.384380134730212,0,0.50578890427775,0.464845549297286,0.94443704049192,0,0.308033580176089,1.06461206063404,0.869932992075073,1.29726953372744,0,0,0,0.190630193923825,0,0,0.95460974377781,2.35484592059769,0,0,0.117812402345686,0.606547444719948,0,0,0,0,1.05650146756755,0,0.565621727814851,1.13008116620243,0,0,3.06915619677634,0.578775534266688,0,0.405820753925408,0,0.281695602532241,0,0.0982490410131212,0.35667105148125,0,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0.18714054040822,0.73254089635947,0,0,0.284136146806413,0,0,0,0,0.562677665642051,0,0.16480387422676,0,0.19924798825107,0.276283915531148,0.251932747854276,0,0,0,0,0,0,0.295930216910801,0,0,0.969332746095218,1.11321717794222,0,0.7812832832557,0.0874599999961957,1.44999915086959,0,0,0.709163045303809,0,0,0.173624994933292,0,0,0,0.331737779793674,0,0.87754158861589,0.21787692703798,0.139423744278603,0.538651809526579,0,0,0,0,0,0.0915975934018623,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0.707660516026713,0,0,0.123563938946503,0,0.134802265961354,0,0.937057782901357,0,0,0,0.394584402849391,0,0.61214552326098,0.063186579628488,0.450970258243478,0.207376382794494,0,0,0,0,0,0,0.347119476670262,0.195984794828755,0.0870592065804026,0.34945333648406,0,0,0.0730893170861856,0.246346371159628,0.484945082442097,0,0,0,0,0.126621591911757,0,0,0.85381197895741,0.19980960958213,0.144090417154106,0,0,0,0,0,0.135904206073614,0,0,0,0,0.410716136675979,0,0.429765441419957,0.262887354279314,0,0,2.15361907373044,0,0.858452096273142,0,0,0.360299883542404,0,0.0787831823072236,0,0.0674035438541849,0,0,0.795229689809303,0.408610218334727,0.321506296930038,0.137539436597234,0,0,0,0.303747783290123,0.335434687599266,0.0788057072991982,0.0524545881349981,0,0.35857467866569,0,1.42939065274673,0,0,1.62899880526114,0.864221491201268,0.979762080328227,1.19730191562487,0,0,0.113312091520126,0.58620893471233,0,0.258565912723101,0.13223260174269,0,0,0.854299300541557,0,2.48543433208317,0,0,0,0,0,0,0,0,0.314108192500469,0,0.244052529803926,0.1251909307065,0,0.332787154610557,0.0620964029413835,0,0,0.151649117541648,0.570930667089935,0,0,0,0,0,0,0,0,0,0.915360273587694,0.302461847526478,0,0.147855149989634,0,0,0,0.414706207840855,0,0,0,0.380805212168795,0.406870733204662,0,0,0,0.398095888698616,0,0,0,0,0,0,0.260994291965212,0,0,0,0.179088841081487,0,0,0,0,0.168942440653073,0,0,0.303859956177382,0.138258436151731,0,0,0,0.327609848846413,0,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,2.87162909937057,0.504143392443436,0.414943514785307,0.161475645631851,0,0,0,0,0.115525666150338,0,0,0,0.376051641746286,0,0,0,0.327543835020193,0,0.135075169236789,0,0.206686796501184,0.380494861163441,0,0.548257766857182,0.992422356778588,0,0,0.535701835878287,0.336283722218824,0,0,0.177404740325278,0,0,0.271878931907327,0.394636641377094,0.118193840883968,0,0.941917114206168,0.314231179832004,0,0.913158720509496,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0.170426809518315,0,0.22910686854405,0,0,0,0.098150233615243,0.609589624911347,0,0.205325613712494,0,0.485710993059139,0,0,0,0,0,0.150962843566674,0.231522474323834,0,0.940634592723046,0,0,0.392616934229891,0.297046400327086,0,0.169927114687817,0.0939839179798536,0.128915775947154,0,0,0,0.0802413666891683,0,0.458729283404541,0.143339583151451,0,0.951880862672806,0,0.5290268405154,0,0,0,0,0,0,0.101988829741982,0,0,0,2.04602485189246,0,0,0.20686599172379,0,0,0,0.0620747142958579,0,0.12729431655633,0,0,0,0,0.502055437748735,0,0,0,0,0.359300808426348,2.34640942403454,0,0,0,0.201273793591026,0
|phase1_expression=1.45342703416445,0.214100523890983,0.563817616383885,1.0007329835313,0,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616804496998528,0,0,0.473447805734733,0,0,0,0,0,0.25618263945135,0.260118695119756,0,0,0,0,0,0,0.113309342697566,0,0.34362744548263,0.506039384039006,0.318565414324097,0,0,0,0.127986611154418,0,0,0.821127996921047,0,0,0.144824403882799,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0.39752481473341,0,0.694281003215189,0,0.419499436209906,0.550236083880135,0.626984899610432,0,0.35576626268671,0,0.402829317109147,0.760272105718513,0.488124115096339,0,0,0.0892997282840798,0,0,1.53316637465883,0,0.183201743930407,0,0,0,0,0,0,0.573673241497627,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0.570471821544449,0.149448680551801,0,0,0,0,0,0.103325781175765,1.18800285728205,0,0,0,0,0,0,0.438977620880838,0,0,0.113432183160021,0,0,0,0.300091096084402,0.103052529238439,0,0.18611685633159,0,0,0,0.0920498986422993,0.161646056818812,0,0,0,0.193260853163297,0.272746120590835,0,0.121973706129595,0,0,0.207322110030741,0,0,0,0,0,0,0.721879481669586,0.236613600079688,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,1.77236972004421,0,0,0,0,1.1240175325762,0,0.0925884451585296,0.325808305310325,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0.288239906833923,0,0,0.763976851116555,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0.410952645100767,0.179060963239896,0,0,0.215627574859517,0.128343036279748,1.01637849688985,0,0,0,0,0,0,0,0,0,0,0,0,0.315404830067869,0,2.70851489754947,2.27407504055985,1.03473071292505,0,0,0.260650843404249,0,0.343143423810856,0,0.215714200818617,0,0,0,0,0.496215615637554,0,0.561320188866147,0.384417447767103,0,0.804269605718038,0,0,0.177561725313127,0,0,0.232420756919918,0.362578348774867,0.601519410909855,0.460404944679482,0,0,0.655622074797121,0,0,0,0,0,0,0,0,1.54227252690289,0.270946437543853,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0.495854746082934,0.384380134730212,0,0.50578890427775,0.464845549297286,0.94443704049192,0,0.308033580176089,1.06461206063404,0.869932992075073,1.29726953372744,0,0,0,0.190630193923825,0,0,0.95460974377781,2.35484592059769,0,0,0.117812402345686,0.606547444719948,0,0,0,0,1.05650146756755,0,0.565621727814851,1.13008116620243,0,0,3.06915619677634,0.578775534266688,0,0.405820753925408,0,0.281695602532241,0,0.0982490410131212,0.35667105148125,0,0.211107635297664,0.329294892959902,0,0,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0.18714054040822,0.73254089635947,0,0,0.284136146806413,0,0,0,0,0.562677665642051,0,0.16480387422676,0,0.19924798825107,0.276283915531148,0.251932747854276,0,0,0,0,0,0,0.295930216910801,0,0,0.969332746095218,1.11321717794222,0,0.7812832832557,0.0874599999961957,1.44999915086959,0,0,0.709163045303809,0,0,0.173624994933292,0,0,0,0.331737779793674,0,0.87754158861589,0.21787692703798,0.139423744278603,0.538651809526579,0,0,0,0,0,0.0915975934018623,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0.707660516026713,0,0,0.123563938946503,0,0.134802265961354,0,0.937057782901357,0,0,0,0.394584402849391,0,0.61214552326098,0.063186579628488,0.450970258243478,0.207376382794494,0,0,0,0,0,0,0.347119476670262,0.195984794828755,0.0870592065804026,0.34945333648406,0,0,0.0730893170861856,0.246346371159628,0.484945082442097,0,0,0,0,0.126621591911757,0,0,0.85381197895741,0.19980960958213,0.144090417154106,0,0,0,0,0,0.135904206073614,0,0,0,0,0.410716136675979,0,0.429765441419957,0.262887354279314,0,0,2.15361907373044,0,0.858452096273142,0,0,0.360299883542404,0,0.0787831823072236,0,0.0674035438541849,0,0,0.795229689809303,0.408610218334727,0.321506296930038,0.137539436597234,0,0,0,0.303747783290123,0.335434687599266,0.0788057072991982,0.0524545881349981,0,0.35857467866569,0,1.42939065274673,0,0,1.62899880526114,0.864221491201268,0.979762080328227,1.19730191562487,0,0,0.113312091520126,0.58620893471233,0,0.258565912723101,0.13223260174269,0,0,0.854299300541557,0,2.48543433208317,0,0,0,0,0,0,0,0,0.314108192500469,0,0.244052529803926,0.1251909307065,0,0.332787154610557,0.0620964029413835,0,0,0.151649117541648,0.570930667089935,0,0,0,0,0,0,0,0,0,0.915360273587694,0.302461847526478,0,0.147855149989634,0,0,0,0.414706207840855,0,0,0,0.380805212168795,0.406870733204662,0,0,0,0.398095888698616,0,0,0,0,0,0,0.260994291965212,0,0,0,0.179088841081487,0,0,0,0,0.168942440653073,0,0,0.303859956177382,0.138258436151731,0,0,0,0.327609848846413,0,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,2.87162909937057,0.504143392443436,0.414943514785307,0.161475645631851,0,0,0,0,0.115525666150338,0,0,0,0.376051641746286,0,0,0,0.327543835020193,0,0.135075169236789,0,0.206686796501184,0.380494861163441,0,0.548257766857182,0.992422356778588,0,0,0.535701835878287,0.336283722218824,0,0,0.177404740325278,0,0,0.271878931907327,0.394636641377094,0.118193840883968,0,0.941917114206168,0.314231179832004,0,0.913158720509496,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0.170426809518315,0,0.22910686854405,0,0,0,0.098150233615243,0.609589624911347,0,0.205325613712494,0,0.485710993059139,0,0,0,0,0,0.150962843566674,0.231522474323834,0,0.940634592723046,0,0,0.392616934229891,0.297046400327086,0,0.169927114687817,0.0939839179798536,0.128915775947154,0,0,0,0.0802413666891683,0,0.458729283404541,0.143339583151451,0,0.951880862672806,0,0.5290268405154,0,0,0,0,0,0,0.101988829741982,0,0,0,2.04602485189246,0,0,0.20686599172379,0,0,0,0.0620747142958579,0,0.12729431655633,0,0,0,0,0.502055437748735,0,0,0,0,0.359300808426348,2.34640942403454,0,0,0,0.201273793591026,0
|short_description=p7@NPDC1
|short_description=p7@NPDC1
}}
}}

Latest revision as of 15:33, 16 September 2015

Short description:p7@NPDC1
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_7_at_NPDC1_5end
Coexpression cluster:NA
Association with transcript: 84bp_to_ENST00000488145_5end
EntrezGene:NPDC1
HGNC: 7899
UniProt: NA
Genome view:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0.0
0.5
1.0
1.5
2.0
2.5
3.0
3.5




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Hg19::chr9:139940414..139940423,-&oldid=4041272"