FFCP PHASE1:Hg19::chr19:18433859..18433870,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25804 | |EntrezGene=25804 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17259 | |HGNC=17259 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y4Z0 | |UniProt=Q9Y4Z0 | ||
|association_with_transcript=130bp_to_ENST00000252816,NM_001252129,NM_012321,uc002niq.2_5end | |association_with_transcript=130bp_to_ENST00000252816,NM_001252129,NM_012321,uc002niq.2_5end | ||
|cluster_id=chr19:18433859..18433870,- | |||
|description=CAGE_peak_3_at_LSM4_5end | |description=CAGE_peak_3_at_LSM4_5end | ||
|id=chr19:18433859..18433870,- | |id=chr19:18433859..18433870,- | ||
|ontology_enrichment_celltype=CL:0000548!8.12e-21!679;CL:0000004!8.12e-21!679;CL:0000255!8.12e-21!679;CL:0000012!1.71e-20!682;CL:0000066!2.95e-20!254;CL:0002321!1.60e-17!248;CL:0000220!1.99e-17!246;CL:0000055!6.37e-13!180;CL:0000221!3.03e-11!71;CL:0000003!1.12e-10!722;CL:0000144!1.82e-09!625;CL:0000333!1.74e-08!41;CL:0000183!1.06e-07!59;CL:0000133!2.14e-07!59;CL:0000680!2.23e-07!57;CL:0000056!2.23e-07!57;CL:0000355!2.23e-07!57;CL:0002077!3.00e-07!33;CL:0000393!3.05e-07!60;CL:0000211!3.05e-07!60;CL:0002371!4.15e-07!591;CL:0000187!7.33e-07!54 | |ontology_enrichment_celltype=CL:0000548!8.12e-21!679;CL:0000004!8.12e-21!679;CL:0000255!8.12e-21!679;CL:0000012!1.71e-20!682;CL:0000066!2.95e-20!254;CL:0002321!1.60e-17!248;CL:0000220!1.99e-17!246;CL:0000055!6.37e-13!180;CL:0000221!3.03e-11!71;CL:0000003!1.12e-10!722;CL:0000144!1.82e-09!625;CL:0000333!1.74e-08!41;CL:0000183!1.06e-07!59;CL:0000133!2.14e-07!59;CL:0000680!2.23e-07!57;CL:0000056!2.23e-07!57;CL:0000355!2.23e-07!57;CL:0002077!3.00e-07!33;CL:0000393!3.05e-07!60;CL:0000211!3.05e-07!60;CL:0002371!4.15e-07!591;CL:0000187!7.33e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:0002077;4.50e-07;34!CL:0002159;9.08e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.11e-20,253;CL:0002321,1.40e-17,250;CL:0000221,1.04e-11,72;CL:0000333,1.67e-08,41;CL:0002077,1.16e-07,34;CL:0000133,1.84e-07,59;CL:0000680,3.64e-07,58;CL:0000056,3.64e-07,58;CL:0000355,3.64e-07,58;CL:0000393,4.85e-07,61;CL:0000211,4.85e-07,61;CL:0002159,7.90e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!8.40e-15!239;DOID:162!1.79e-13!235;DOID:305!7.91e-09!106;DOID:0050687!3.35e-08!143;DOID:0050686!4.89e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,6.95e-15,239;DOID:162,1.50e-13,235;DOID:305,6.84e-09,106;DOID:0050687,2.93e-08,143;DOID:0050686,4.72e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0003104!2.38e-09!238;UBERON:0009142!2.38e-09!238;UBERON:0000481!7.47e-09!347;UBERON:0000486!1.73e-08!82;UBERON:0000914!2.11e-08!83;UBERON:0002329!2.11e-08!83;UBERON:0003077!2.11e-08!83;UBERON:0003059!2.11e-08!83;UBERON:0007282!2.11e-08!83;UBERON:0009618!2.11e-08!83;UBERON:0007285!2.11e-08!83;UBERON:0002100!2.47e-08!216;UBERON:0000475!4.44e-08!365;UBERON:0005256!2.06e-07!143;UBERON:0005085!2.10e-07!29;UBERON:0004290!2.45e-07!70;UBERON:0000483!6.16e-07!309;UBERON:0000119!6.72e-07!312 | |ontology_enrichment_uberon=UBERON:0003104!2.38e-09!238;UBERON:0009142!2.38e-09!238;UBERON:0000481!7.47e-09!347;UBERON:0000486!1.73e-08!82;UBERON:0000914!2.11e-08!83;UBERON:0002329!2.11e-08!83;UBERON:0003077!2.11e-08!83;UBERON:0003059!2.11e-08!83;UBERON:0007282!2.11e-08!83;UBERON:0009618!2.11e-08!83;UBERON:0007285!2.11e-08!83;UBERON:0002100!2.47e-08!216;UBERON:0000475!4.44e-08!365;UBERON:0005256!2.06e-07!143;UBERON:0005085!2.10e-07!29;UBERON:0004290!2.45e-07!70;UBERON:0000483!6.16e-07!309;UBERON:0000119!6.72e-07!312 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,2.36e-08,83;UBERON:0002100,9.22e-08,199;UBERON:0007503,1.28e-07,78;UBERON:0002329,3.35e-07,71;UBERON:0003059,3.35e-07,71;UBERON:0007282,3.35e-07,71;UBERON:0004290,3.35e-07,71;UBERON:0009618,3.35e-07,71;UBERON:0000483,3.43e-07,306;UBERON:0000119,3.76e-07,309;UBERON:0007524,4.13e-07,73;UBERON:0005085,5.05e-07,31;UBERON:0003077,6.30e-07,72;UBERON:0007285,6.30e-07,72 | |||
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| ||
|short_description=p3@LSM4 | |short_description=p3@LSM4 | ||
}} | }} |
Latest revision as of 15:37, 16 September 2015
Short description: | p3@LSM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LSM4_5end |
Coexpression cluster: | NA |
Association with transcript: | 130bp_to_ENST00000252816, NM_001252129, NM_012321, uc002niq.2_5end |
EntrezGene: | LSM4 |
HGNC: | 17259 |
UniProt: | Q9Y4Z0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.11e-20 | 253 |
embryonic cell | 1.40e-17 | 250 |
ectodermal cell | 1.04e-11 | 72 |
migratory neural crest cell | 1.67e-08 | 41 |
ecto-epithelial cell | 1.16e-07 | 34 |
neurectodermal cell | 1.84e-07 | 59 |
muscle precursor cell | 3.64e-07 | 58 |
myoblast | 3.64e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.64e-07 | 58 |
electrically responsive cell | 4.85e-07 | 61 |
electrically active cell | 4.85e-07 | 61 |
general ecto-epithelial cell | 7.90e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 2.36e-08 | 83 |
trunk | 9.22e-08 | 199 |
epithelial vesicle | 1.28e-07 | 78 |
somite | 3.35e-07 | 71 |
presomitic mesoderm | 3.35e-07 | 71 |
presumptive segmental plate | 3.35e-07 | 71 |
dermomyotome | 3.35e-07 | 71 |
trunk paraxial mesoderm | 3.35e-07 | 71 |
epithelium | 3.43e-07 | 306 |
cell layer | 3.76e-07 | 309 |
dense mesenchyme tissue | 4.13e-07 | 73 |
ectodermal placode | 5.05e-07 | 31 |
paraxial mesoderm | 6.30e-07 | 72 |
presumptive paraxial mesoderm | 6.30e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 6.95e-15 | 239 |
cancer | 1.50e-13 | 235 |
carcinoma | 6.84e-09 | 106 |
cell type cancer | 2.93e-08 | 143 |
organ system cancer | 4.72e-07 | 137 |