FFCP PHASE1:Hg19::chr3:170076223..170076242,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6498 | |EntrezGene=6498 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10897 | |HGNC=10897 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-54bp_to_ENST00000490989_5end | |association_with_transcript=-54bp_to_ENST00000490989_5end | ||
|cluster_id=chr3:170076223..170076242,+ | |||
|coexpression_cluster_id=C4304 | |||
|description=CAGE_peak_6_at_SKIL_5end | |description=CAGE_peak_6_at_SKIL_5end | ||
|id=chr3:170076223..170076242,+ | |id=chr3:170076223..170076242,+ | ||
|ontology_enrichment_celltype=CL:0000144!1.41e-12!625;CL:0000012!1.43e-12!682;CL:0000548!3.86e-12!679;CL:0000004!3.86e-12!679;CL:0000255!3.86e-12!679;CL:0000055!2.85e-11!180;CL:0000222!1.80e-10!119;CL:0000680!9.95e-10!57;CL:0000056!9.95e-10!57;CL:0000355!9.95e-10!57;CL:0000393!1.14e-09!60;CL:0000211!1.14e-09!60;CL:0002321!2.58e-09!248;CL:0000183!3.74e-09!59;CL:0000187!8.54e-09!54;CL:0002371!1.02e-08!591;CL:0000220!1.18e-08!246 | |ontology_enrichment_celltype=CL:0000144!1.41e-12!625;CL:0000012!1.43e-12!682;CL:0000548!3.86e-12!679;CL:0000004!3.86e-12!679;CL:0000255!3.86e-12!679;CL:0000055!2.85e-11!180;CL:0000222!1.80e-10!119;CL:0000680!9.95e-10!57;CL:0000056!9.95e-10!57;CL:0000355!9.95e-10!57;CL:0000393!1.14e-09!60;CL:0000211!1.14e-09!60;CL:0002321!2.58e-09!248;CL:0000183!3.74e-09!59;CL:0000187!8.54e-09!54;CL:0002371!1.02e-08!591;CL:0000220!1.18e-08!246 | ||
|ontology_enrichment_celltype_v019=CL:0002322;6.87e-10;5!CL:0002321;2.52e-09;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,7.64e-10,5;CL:0000393,1.99e-07,61;CL:0000211,1.99e-07,61;CL:0000680,8.65e-07,58;CL:0000056,8.65e-07,58;CL:0000355,8.65e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004573!1.02e-11!33;UBERON:0004571!1.02e-11!33;UBERON:0001637!1.47e-11!42;UBERON:0003509!1.47e-11!42;UBERON:0004572!1.47e-11!42;UBERON:0002049!1.15e-09!79;UBERON:0007798!1.15e-09!79;UBERON:0001981!6.43e-09!60;UBERON:0007500!6.43e-09!60;UBERON:0004537!6.43e-09!60;UBERON:0006965!6.43e-09!60;UBERON:0000947!3.47e-08!21;UBERON:0010191!3.47e-08!21;UBERON:0001134!5.59e-08!61;UBERON:0002036!5.59e-08!61;UBERON:0003082!5.59e-08!61;UBERON:0004535!5.73e-08!110;UBERON:0004872!6.55e-08!84;UBERON:0003914!9.98e-08!118;UBERON:0000055!1.22e-07!69;UBERON:0002385!1.72e-07!63;UBERON:0001015!1.72e-07!63;UBERON:0000383!1.72e-07!63;UBERON:0001009!3.66e-07!113;UBERON:0000490!9.37e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.65e-08;33!UBERON:0004571;2.65e-08;33!UBERON:0001637;1.58e-07;42!UBERON:0003509;1.58e-07;42!UBERON:0004572;1.58e-07;42!UBERON:0000488;2.32e-07;4!UBERON:0003688;5.36e-07;6!UBERON:0002358;5.36e-07;6!UBERON:0003684;5.36e-07;6!UBERON:0001178;5.36e-07;6!UBERON:0007625;9.49e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,1.59e-09,33;UBERON:0004571,1.59e-09,33;UBERON:0001637,1.77e-08,42;UBERON:0003509,1.77e-08,42;UBERON:0004572,1.77e-08,42;UBERON:0002049,7.66e-08,78;UBERON:0007798,7.66e-08,78;UBERON:0000488,2.99e-07,4;UBERON:0003688,3.02e-07,6;UBERON:0002358,3.02e-07,6;UBERON:0003684,3.02e-07,6;UBERON:0001178,3.02e-07,6 | |||
|phase1_expression=0.908391896352783,0.642301571672949,3.52386010239928,3.00219895059391,0.893922188854576,0,2.53299878168311,0.631719873426831,0,2.7030733015166,1.39560233594486,0.436882744260345,0.527533956456907,0.247532705920093,0.331397375727916,3.36162573225888,0.602694528023977,1.46062018077475,0.975865597581014,1.35433163884467,0.204000691244253,0.313454721478088,0.572471974262113,0.547497700291537,0.251085279189606,0,0,0,0,0,0.309632246632152,0,0.30120591877825,0,0,0,0,0,0.200544447470142,0.434021741431704,0,0,0,0.290796477559129,0.755751887377619,1.21292030593908,0.697287110717054,1.6446715520873,0,0.863077176966451,0.512321413058201,0.47296445977717,0.344745680736619,0,1.35426486594342,3.01187743268168,0.818718450173537,1.57306439111559,0.918251677112708,0.641858054152187,1.27867425159808,0,0.598390972864896,0.852449501065388,0.870627715885752,0,3.11411124497787,0.502497330513487,0,0.217188844705117,0,0.736555271975129,0,0,0,0,0.22465726229299,0,0,0.570025487482497,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0,1.32171328579026,0.560508562981536,0,0.196709770113833,0,0.205601498999509,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.534880391567015,0,2.43806866313962,0.670700859703636,1.53435074212236,1.0843174571537,0,0.434539556882471,1.5905718941022,0,3.68685786939865,5.32150553910154,4.65524364173568,0.327447688744282,0,0,0,0,0,0.238490624305342,1.14398982156026,1.48583000531826,1.39133685156694,0.860234595106124,1.38856200643038,0.56530794192401,0.838998872419812,0.825354125820202,1.8809546988313,0.258416759169329,0.71153252537342,1.33888245105868,0,0,0.24406205754817,1.47065232138347,0.81014194788176,0.892997282840798,0.44905874525234,0.225222960966644,0,0.949265659568129,1.09921046358244,5.27121669744253,0,0.436094052142534,1.49091585508596,1.01304409331664,1.45650098894541,2.58152958673932,0.354668382198357,0.560677600142307,0,0.49333509683432,0.311211035399766,2.42479209725439,0.817309515567294,0.605429710579726,1.72852777344,0.468642863667593,0,0,0,0,0.161872944368132,0,0.204154171254893,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,1.24775401476023,0.89694817844431,0,0.423863802319124,0.600182192168805,0.309157587715317,1.03056216018252,0,2.70042131586026,1.36411807225678,0.252433774244115,0.184099797284599,0.484938170456436,0.710019185033229,0.503760491138201,0.169560592310488,0.57978255948989,0.545492241181669,0,6.83052754325734,7.42166702600317,8.13357600086629,5.07939169575315,6.30802127189071,5.47466038613745,0,0.643240938192885,0,0.464367928031979,0,0,0.168584690078102,0,0,0.217879444092406,0,0,0.196221465125346,0,0,1.40241773803446,0,0,1.26755034821831,0,0,0,0,1.20097467208968,0.329250856225877,0,0,0,0.325808305310325,1.03993478527958,0,0.927443239800615,8.45342598497916,0,0,0.380508304469197,0,0,0,0,0.297262324577456,0.93733833986777,1.17587489739202,1.27597587518148,0.358234090811393,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0.336393253036082,0.87192013766656,0.2933531432838,1.55126058909333,0,0,1.06375246633948,0,0,0,0.266422179016099,0.285955987316295,0,0.823240336780769,0,0,0,0.602878754119172,0.871533458600294,0.499864955910285,0,0,0,0.239624855491583,1.14861935834114,1.42636905040718,0.579125226670317,1.02738161275192,1.43248770591916,0,0.197030760201927,0,0.128343036279748,0.254094624222463,0,0.773288812777695,0,0,0,2.99161459204025,0,0.12269149171914,0,0.271265023699736,0,0.535286966391485,0.630809660135739,0.702848489956279,0.902838299183157,0,1.03473071292505,0.664225598535437,0.368738337083406,0.260650843404249,0.195801157462741,0.343143423810856,0.206768026122887,0.647142602455851,0.213455115606889,0,0,0.30239029332968,2.97729369382532,4.75732117192994,0.561320188866147,2.81906128362542,2.55853624533352,1.76939313257968,0,0.308419387605311,0,0.492762936082855,0.519254429183621,0.348631135379878,0,1.80455823272956,0,0.68888668898764,0.364182336013434,0.131124414959424,0.451199612907412,1.07821471946181,0,0,0.844413031143006,0,0.340187410553031,0.431831832204279,0,0.541892875087706,0.501689773854853,0.509752546090077,0,0,0,0,0.256450125116389,0.328014645699706,2.60302715731442,0.412164046590889,0.366277859273374,0.660075999364704,1.14853107599234,0,0,1.16004861950546,0.770243085573222,0.460511024178389,1.10269257987624,0.966782203814463,0.290033387828457,0.170453254832202,1.24644849905432,0.330569830721956,0.384380134730212,0.382838137483752,0,1.39453664789186,3.46293581513704,0.6970372701606,0.924100740528266,1.06461206063404,0,0.9266210955196,1.14499909393593,0.372158369359667,1.58189712359363,0,0,0,0,0.78494864019923,0.179872457583315,0.274537029736055,0.235624804691373,0.606547444719948,1.58510321173008,1.26377536871694,0.975267478179181,1.46228093778771,1.05650146756755,1.22849920267187,1.27264888758341,0,1.10273068709225,0.66343897524122,1.75380354101505,0,0,0.405820753925408,0.92947049429925,0,0.286822704408103,0.491245205065606,0,0,0,0.658589785919804,0,0,0,0,0,0.376575203107117,0,1.68471475667626,0,2.0675106018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| ||
|short_description=p6@SKIL | |short_description=p6@SKIL | ||
}} | }} |
Latest revision as of 16:02, 16 September 2015
Short description: | p6@SKIL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SKIL_5end |
Coexpression cluster: | C4304_iPS_H9_Lens_HES3GFP_Ciliary_renal_Fibroblast |
Association with transcript: | -54bp_to_ENST00000490989_5end |
EntrezGene: | SKIL |
HGNC: | 10897 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 7.64e-10 | 5 |
electrically responsive cell | 1.99e-07 | 61 |
electrically active cell | 1.99e-07 | 61 |
muscle precursor cell | 8.65e-07 | 58 |
myoblast | 8.65e-07 | 58 |
multi-potent skeletal muscle stem cell | 8.65e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 1.59e-09 | 33 |
systemic arterial system | 1.59e-09 | 33 |
artery | 1.77e-08 | 42 |
arterial blood vessel | 1.77e-08 | 42 |
arterial system | 1.77e-08 | 42 |
vasculature | 7.66e-08 | 78 |
vascular system | 7.66e-08 | 78 |
atypical epithelium | 2.99e-07 | 4 |
omentum | 3.02e-07 | 6 |
peritoneum | 3.02e-07 | 6 |
abdominal cavity | 3.02e-07 | 6 |
visceral peritoneum | 3.02e-07 | 6 |