FFCP PHASE1:Hg19::chr1:144995002..144995057,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9659 | |EntrezGene=9659 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15580 | |HGNC=15580 | ||
|TSSclassifier=strong | |||
|UniProt=E9PJK3,Q5VU43 | |UniProt=E9PJK3,Q5VU43 | ||
|association_with_transcript=0bp_to_ENST00000369356,ENST00000528129,NM_001002810,NM_001002812,NM_001198834,NM_014644,uc001elk.1,uc001elw.3,uc001emc.1,uc001emd.1,uc001emg.1_5end | |association_with_transcript=0bp_to_ENST00000369356,ENST00000528129,NM_001002810,NM_001002812,NM_001198834,NM_014644,uc001elk.1,uc001elw.3,uc001emc.1,uc001emd.1,uc001emg.1_5end | ||
|cluster_id=chr1:144995002..144995057,- | |||
|coexpression_cluster_id=C93 | |coexpression_cluster_id=C93 | ||
|description=CAGE_peak_11_at_PDE4DIP_5end | |description=CAGE_peak_11_at_PDE4DIP_5end | ||
|id=chr1:144995002..144995057,- | |id=chr1:144995002..144995057,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005062;3.44e-12;4!UBERON:0007284;3.44e-12;4!UBERON:0003104;4.24e-09;31 | |||
|ontology_enrichment_disease=DOID:1036!7.12e-12!8;DOID:8692!2.04e-10!31;DOID:1240!5.76e-10!39 | |ontology_enrichment_disease=DOID:1036!7.12e-12!8;DOID:8692!2.04e-10!31;DOID:1240!5.76e-10!39 | ||
|ontology_enrichment_disease_v019=DOID:1036;1.46e-23;8!DOID:8692;1.14e-20;31!DOID:1240;6.43e-16;39!DOID:114;2.57e-11;2!DOID:2531;3.03e-11;51!DOID:0060083;3.03e-11;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.61e-23,8;DOID:8692,1.34e-21,31;DOID:1240,9.93e-20,39;DOID:2531,1.96e-14,51;DOID:0060083,1.96e-14,51;DOID:114,2.57e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.60e-17!115;UBERON:0003076!5.43e-07!15;UBERON:0003057!5.43e-07!15;UBERON:0004151!8.32e-07!3;UBERON:0003978!8.64e-07!3;UBERON:0009751!8.64e-07!3;UBERON:0000946!8.64e-07!3;UBERON:0002523!8.64e-07!3;UBERON:0005983!8.64e-07!3;UBERON:0002165!8.64e-07!3;UBERON:0002062!8.64e-07!3;UBERON:0007280!8.64e-07!3 | |ontology_enrichment_uberon=UBERON:0007023!1.60e-17!115;UBERON:0003076!5.43e-07!15;UBERON:0003057!5.43e-07!15;UBERON:0004151!8.32e-07!3;UBERON:0003978!8.64e-07!3;UBERON:0009751!8.64e-07!3;UBERON:0000946!8.64e-07!3;UBERON:0002523!8.64e-07!3;UBERON:0005983!8.64e-07!3;UBERON:0002165!8.64e-07!3;UBERON:0002062!8.64e-07!3;UBERON:0007280!8.64e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0004151;3.98e-16;3!UBERON:0003978;4.40e-16;3!UBERON:0000946;4.40e-16;3!UBERON:0007100;2.85e-15;25!UBERON:0002081;2.78e-11;2!UBERON:0005090;3.24e-11;2!UBERON:0001630;3.24e-11;2!UBERON:0002133;3.41e-11;2!UBERON:0000341;4.52e-11;2!UBERON:0000948;5.95e-08;22!UBERON:0001134;1.10e-07;16!UBERON:0002036;1.10e-07;16!UBERON:0001723;1.83e-07;3!UBERON:0001033;1.83e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,3.78e-16,3;UBERON:0003978,4.19e-16,3;UBERON:0009751,4.19e-16,3;UBERON:0000946,4.19e-16,3;UBERON:0002523,4.19e-16,3;UBERON:0005983,4.19e-16,3;UBERON:0002165,4.19e-16,3;UBERON:0002062,4.19e-16,3;UBERON:0007280,4.19e-16,3;UBERON:0007100,4.98e-14,27;UBERON:0003103,1.56e-11,68;UBERON:0002081,2.57e-11,2;UBERON:0010227,2.57e-11,2;UBERON:0005090,3.16e-11,2;UBERON:0001630,3.16e-11,2;UBERON:0002133,3.16e-11,2;UBERON:0000341,4.52e-11,2;UBERON:0001723,1.58e-07,3;UBERON:0001033,1.58e-07,3;UBERON:0010056,1.58e-07,3;UBERON:0000948,3.07e-07,24;UBERON:0005498,3.07e-07,24;UBERON:0004140,3.07e-07,24;UBERON:0009881,3.07e-07,24;UBERON:0004141,3.07e-07,24;UBERON:0003084,3.07e-07,24;UBERON:0007005,3.07e-07,24;UBERON:0004139,3.07e-07,24;UBERON:0004291,3.07e-07,24;UBERON:0004797,3.68e-07,7;UBERON:0007023,9.31e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.232387885739037,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0.87192013766656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0.784596007954691,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0.413509717453592,0.322260734604821,0,0.170453254832202,1.06838442776085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1490322207942,0,0,0.842391534340376,0,0,17.5444133963047,0,0,0,0,0,0,0,0,0,0,168.629736558366,1.08182271390393,15.6543824958975,1.4098700508785,0,0.293016358543788,0,17.1622811787317,0,0.47748896947538,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0.221158519862449,0,0.219385397153973,0,0,0,0,0.23056390438806,1.97466817701499,2.49888955420619,1.5950057986596,0.0915975934018623,0.533034776018635,0,0.627921025580099,0.166211681900156,272.06836670432,273.115110304611,253.578417920498,307.590800745904,40.0520179030554,0,0,0,0,0,0,0,0,0,0,0,4.01288823649394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.451961481561065,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.93703684071214,12.3746628966309,2.87149209830726,5.39133301347276,7.72606886645828,12.7207730741867,13.4366944973453,0,0,0,0,0,0,0,0,0,0.482259445395058,0,0.415440338029185,0,0,0.0607495566580247,0,1.02447419488958,1.31136470337495,0,0,0,13.579211201094,8.60719561475061,0,0,0,0,0,1.14929529049075,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0.427149650270779,0.78602152549833,0,0,0,0,0,0,0,0.612691153526923,0,0,0,0,0.3755727921195,0.573409195690071,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0.785720083444267,0,0,0.405225507710368,0,0,0.126831620387814,0,0,0.496211178389294,0,0,0,0,0,1.36597314810779,0.532214220975833,0,0,0.40781839786099,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,1.56472445072321,0,0.62164849248911,0,0,0,0,0,0,0,0,0,0,0,0,5.82685953469105,5.0304775359561,4.6392577253528,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,1.2679671827502,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0.371995018166751,0,0,0,0,0,0,0.534434810531121,0,0,0,0,0,0,3.19850972851471,3.33290204049236,0,0.0620747142958579,0.224263725161227,0.572824424503484,0.202117188958219,2.39488422686657,1.71116650542641,0.26940821205835,0.0717222053926763,0.665320713092027,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.232387885739037,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0.87192013766656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0.784596007954691,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0.413509717453592,0.322260734604821,0,0.170453254832202,1.06838442776085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1490322207942,0,0,0.842391534340376,0,0,17.5444133963047,0,0,0,0,0,0,0,0,0,0,168.629736558366,1.08182271390393,15.6543824958975,1.4098700508785,0,0.293016358543788,0,17.1622811787317,0,0.47748896947538,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0.221158519862449,0,0.219385397153973,0,0,0,0,0.23056390438806,1.97466817701499,2.49888955420619,1.5950057986596,0.0915975934018623,0.533034776018635,0,0.627921025580099,0.166211681900156,272.06836670432,273.115110304611,253.578417920498,307.590800745904,40.0520179030554,0,0,0,0,0,0,0,0,0,0,0,4.01288823649394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.451961481561065,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.93703684071214,12.3746628966309,2.87149209830726,5.39133301347276,7.72606886645828,12.7207730741867,13.4366944973453,0,0,0,0,0,0,0,0,0,0.482259445395058,0,0.415440338029185,0,0,0.0607495566580247,0,1.02447419488958,1.31136470337495,0,0,0,13.579211201094,8.60719561475061,0,0,0,0,0,1.14929529049075,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0.427149650270779,0.78602152549833,0,0,0,0,0,0,0,0.612691153526923,0,0,0,0,0.3755727921195,0.573409195690071,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0.785720083444267,0,0,0.405225507710368,0,0,0.126831620387814,0,0,0.496211178389294,0,0,0,0,0,1.36597314810779,0.532214220975833,0,0,0.40781839786099,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,1.56472445072321,0,0.62164849248911,0,0,0,0,0,0,0,0,0,0,0,0,5.82685953469105,5.0304775359561,4.6392577253528,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,1.2679671827502,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0.371995018166751,0,0,0,0,0,0,0.534434810531121,0,0,0,0,0,0,3.19850972851471,3.33290204049236,0,0.0620747142958579,0.224263725161227,0.572824424503484,0.202117188958219,2.39488422686657,1.71116650542641,0.26940821205835,0.0717222053926763,0.665320713092027,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p11@PDE4DIP | |short_description=p11@PDE4DIP | ||
}} | }} |
Latest revision as of 16:55, 16 September 2015
Short description: | p11@PDE4DIP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_PDE4DIP_5end |
Coexpression cluster: | C93_chronic_acute_leukemia_acantholytic_medulloblastoma_testis_papillotubular |
Association with transcript: | 0bp_to_ENST00000369356, ENST00000528129, NM_001002810, NM_001002812, NM_001198834, NM_014644, uc001elk.1, uc001elw.3, uc001emc.1, uc001emd.1, uc001emg.1_5end |
EntrezGene: | PDE4DIP |
HGNC: | 15580 |
UniProt: | E9PJK3Q5VU43 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 3.78e-16 | 3 |
valve | 4.19e-16 | 3 |
cardiac mesenchyme | 4.19e-16 | 3 |
cardial valve | 4.19e-16 | 3 |
tunica intima | 4.19e-16 | 3 |
heart layer | 4.19e-16 | 3 |
endocardium | 4.19e-16 | 3 |
endocardial cushion | 4.19e-16 | 3 |
presumptive endocardium | 4.19e-16 | 3 |
primary circulatory organ | 4.98e-14 | 27 |
compound organ | 1.56e-11 | 68 |
cardiac atrium | 2.57e-11 | 2 |
future cardiac atrium | 2.57e-11 | 2 |
muscle structure | 3.16e-11 | 2 |
muscle organ | 3.16e-11 | 2 |
atrioventricular valve | 3.16e-11 | 2 |
throat | 4.52e-11 | 2 |
tongue | 1.58e-07 | 3 |
gustatory system | 1.58e-07 | 3 |
future tongue | 1.58e-07 | 3 |
heart | 3.07e-07 | 24 |
primitive heart tube | 3.07e-07 | 24 |
primary heart field | 3.07e-07 | 24 |
anterior lateral plate mesoderm | 3.07e-07 | 24 |
heart tube | 3.07e-07 | 24 |
heart primordium | 3.07e-07 | 24 |
cardiac mesoderm | 3.07e-07 | 24 |
cardiogenic plate | 3.07e-07 | 24 |
heart rudiment | 3.07e-07 | 24 |
blood vessel layer | 3.68e-07 | 7 |
adult organism | 9.31e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.61e-23 | 8 |
myeloid leukemia | 1.34e-21 | 31 |
leukemia | 9.93e-20 | 39 |
hematologic cancer | 1.96e-14 | 51 |
immune system cancer | 1.96e-14 | 51 |
heart disease | 2.57e-11 | 2 |