FFCP PHASE1:Hg19::chr5:161112693..161112696,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2559 | |EntrezGene=2559 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4080 | |HGNC=4080 | ||
|TSSclassifier=strong | |||
|UniProt=Q16445 | |UniProt=Q16445 | ||
|association_with_transcript=35bp_to_NM_000811,uc003lyu.2_5end | |association_with_transcript=35bp_to_NM_000811,uc003lyu.2_5end | ||
|cluster_id=chr5:161112693..161112696,+ | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_12_at_GABRA6_5end | |description=CAGE_peak_12_at_GABRA6_5end | ||
|id=chr5:161112693..161112696,+ | |id=chr5:161112693..161112696,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.79e-195;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002037!2.58e-74!6;UBERON:0006215!2.58e-74!6;UBERON:0004733!5.11e-66!12;UBERON:0002028!5.11e-66!12;UBERON:0007277!5.11e-66!12;UBERON:0004732!4.89e-61!13;UBERON:0003076!4.60e-53!15;UBERON:0003057!4.60e-53!15;UBERON:0002680!5.60e-50!9;UBERON:0001895!5.60e-50!9;UBERON:0010092!5.60e-50!9;UBERON:0001896!1.12e-17!3;UBERON:0005290!1.12e-17!3;UBERON:0010096!1.12e-17!3;UBERON:0001049!1.72e-14!57;UBERON:0005068!1.72e-14!57;UBERON:0006241!1.72e-14!57;UBERON:0007135!1.72e-14!57;UBERON:0002616!4.87e-14!59;UBERON:0000955!5.31e-12!69;UBERON:0006238!5.31e-12!69;UBERON:0001017!2.82e-10!82;UBERON:0003075!5.98e-10!86;UBERON:0007284!5.98e-10!86;UBERON:0005743!7.60e-10!86;UBERON:0002346!1.51e-09!90;UBERON:0000073!5.24e-09!94;UBERON:0000063!5.24e-09!97;UBERON:0001016!5.24e-09!94;UBERON:0007023!1.02e-07!115;UBERON:0002298!1.80e-07!8;UBERON:0000033!3.69e-07!123;UBERON:0000153!7.27e-07!129;UBERON:0007811!7.27e-07!129 | |ontology_enrichment_uberon=UBERON:0002037!2.58e-74!6;UBERON:0006215!2.58e-74!6;UBERON:0004733!5.11e-66!12;UBERON:0002028!5.11e-66!12;UBERON:0007277!5.11e-66!12;UBERON:0004732!4.89e-61!13;UBERON:0003076!4.60e-53!15;UBERON:0003057!4.60e-53!15;UBERON:0002680!5.60e-50!9;UBERON:0001895!5.60e-50!9;UBERON:0010092!5.60e-50!9;UBERON:0001896!1.12e-17!3;UBERON:0005290!1.12e-17!3;UBERON:0010096!1.12e-17!3;UBERON:0001049!1.72e-14!57;UBERON:0005068!1.72e-14!57;UBERON:0006241!1.72e-14!57;UBERON:0007135!1.72e-14!57;UBERON:0002616!4.87e-14!59;UBERON:0000955!5.31e-12!69;UBERON:0006238!5.31e-12!69;UBERON:0001017!2.82e-10!82;UBERON:0003075!5.98e-10!86;UBERON:0007284!5.98e-10!86;UBERON:0005743!7.60e-10!86;UBERON:0002346!1.51e-09!90;UBERON:0000073!5.24e-09!94;UBERON:0000063!5.24e-09!97;UBERON:0001016!5.24e-09!94;UBERON:0007023!1.02e-07!115;UBERON:0002298!1.80e-07!8;UBERON:0000033!3.69e-07!123;UBERON:0000153!7.27e-07!129;UBERON:0007811!7.27e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.83e-98;6!UBERON:0002680;3.75e-66;9!UBERON:0001895;3.75e-66;9!UBERON:0004733;5.59e-50;12!UBERON:0002028;5.59e-50;12!UBERON:0004732;3.04e-46;13!UBERON:0000073;8.24e-09;53!UBERON:0002616;8.24e-09;53!UBERON:0001016;9.24e-08;83!UBERON:0000955;1.67e-07;68!UBERON:0001017;8.54e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.83e-98,6;UBERON:0006215,1.83e-98,6;UBERON:0002680,3.75e-66,9;UBERON:0001895,3.75e-66,9;UBERON:0010092,3.75e-66,9;UBERON:0004733,5.59e-50,12;UBERON:0002028,5.59e-50,12;UBERON:0007277,5.59e-50,12;UBERON:0004732,3.04e-46,13;UBERON:0003076,2.90e-40,15;UBERON:0003057,2.90e-40,15;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89 | |||
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|short_description=p12@GABRA6 | |short_description=p12@GABRA6 | ||
}} | }} |
Latest revision as of 17:11, 16 September 2015
Short description: | p12@GABRA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_GABRA6_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 35bp_to_NM_000811, uc003lyu.2_5end |
EntrezGene: | GABRA6 |
HGNC: | 4080 |
UniProt: | Q16445 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.83e-98 | 6 |
rhombic lip | 1.83e-98 | 6 |
regional part of metencephalon | 3.75e-66 | 9 |
metencephalon | 3.75e-66 | 9 |
future metencephalon | 3.75e-66 | 9 |
segmental subdivision of hindbrain | 5.59e-50 | 12 |
hindbrain | 5.59e-50 | 12 |
presumptive hindbrain | 5.59e-50 | 12 |
segmental subdivision of nervous system | 3.04e-46 | 13 |
posterior neural tube | 2.90e-40 | 15 |
chordal neural plate | 2.90e-40 | 15 |
regional part of nervous system | 4.68e-12 | 53 |
regional part of brain | 4.68e-12 | 53 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
brain | 1.53e-09 | 68 |
future brain | 1.53e-09 | 68 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |