FFCP PHASE1:Hg19::chr12:120315074..120315097,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:120315074..120315097,- to FFCP PHASE1:Hg19::chr12:120315074..120315097,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11113 | |EntrezGene=11113 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1985 | |HGNC=1985 | ||
|TSSclassifier=strong | |||
|UniProt=O14578,Q2M5E1 | |UniProt=O14578,Q2M5E1 | ||
|association_with_transcript=0bp_to_ENST00000261833,ENST00000392521,NM_001206999,NM_007174,uc001txi.1,uc001txj.1_5end | |||
|cluster_id=chr12:120315074..120315097,- | |||
|description=CAGE_peak_3_at_CIT_5end | |||
|id=chr12:120315074..120315097,- | |||
|ontology_enrichment_celltype=CL:0000066!3.27e-16!254;CL:0000548!1.81e-15!679;CL:0000004!1.81e-15!679;CL:0000255!1.81e-15!679;CL:0000012!6.71e-15!682;CL:0000055!1.39e-14!180;CL:0000333!8.58e-13!41;CL:0002321!4.80e-11!248;CL:0000133!1.36e-10!59;CL:0000220!2.04e-10!246;CL:0000221!1.09e-08!71;CL:0000003!4.15e-08!722;CL:0000095!8.20e-08!17;CL:0000123!8.20e-08!17;CL:0002319!1.30e-07!25;CL:0000057!1.82e-07!75;CL:0000148!2.47e-07!10;CL:0000541!2.47e-07!10;CL:0002620!2.91e-07!23;CL:0000063!4.91e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000095;3.61e-08;17!CL:0002319;3.93e-08;25!CL:0000148;6.29e-08;10!CL:0000243;5.90e-07;15!CL:0000125;5.90e-07;15!CL:0002620;6.23e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,1.04e-13,41;CL:0000066,1.64e-12,253;CL:0000133,2.23e-11,59;CL:0000221,1.87e-08,72;CL:0002319,4.18e-08,25;CL:0000095,4.36e-08,17;CL:0000123,4.36e-08,17;CL:0002321,4.36e-08,250;CL:0000148,6.48e-08,10;CL:0000541,6.48e-08,10;CL:0000057,4.89e-07,76;CL:0000243,7.08e-07,15;CL:0000125,7.08e-07,15;CL:0000030,7.08e-07,15;CL:0000339,7.08e-07,15;CL:0002620,8.35e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000339;5.90e-07;15 | |||
|ontology_enrichment_disease=DOID:14566!4.74e-34!239;DOID:162!1.03e-33!235;DOID:0050687!1.37e-19!143;DOID:305!3.15e-15!106;DOID:0050686!5.79e-15!137;DOID:2531!1.19e-09!51;DOID:0060083!1.19e-09!51;DOID:1240!1.81e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,3.23e-32,239;DOID:162,6.66e-32,235;DOID:0050687,2.07e-18,143;DOID:305,7.60e-14,106;DOID:0050686,1.38e-13,137;DOID:2531,6.52e-10,51;DOID:0060083,6.52e-10,51;DOID:1240,1.58e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002097!4.82e-08!40 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,5.98e-07,41 | |||
|phase1_expression=0,0.642301571672949,0,0,0,0,0,0,0,1.22866968250754,1.39560233594486,4.15038607047327,1.84636884759917,0.37129905888014,0.662794751455832,0,0,0,0,7.01790031037691,4.28401451612931,2.19418305034661,10.304495536718,7.39121895393575,5.52387614217132,1.83392173795083,3.11982239909794,2.59745578335141,0.393364276848904,0.383829398097213,0.154816123316076,2.75826367343678,0.90361775633475,0.369754010166788,5.88750724410292,2.70121541726101,0.880801318004542,0.553995408531877,0,0,0.447830948479849,0,0.515151135268373,0,0.377875943688809,0,0,0.411167888021826,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632924774881769,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,1.05353633910031,0.196709770113833,0.393010762749165,0.205601498999509,0.167186495390678,0,0,0,2.33961959458865,0.294605907474837,0.443067789167242,0,1.5370958367081,1.04047478047903,3.4531959966772,0.829050053357545,1.73881851441031,0,0.267540828089713,0,3.51258962362455,0.383220493601921,0,0,0,0,0,0,0.255973222308837,0,0,0,0.201606743224732,0,0,0,0.670700859703636,0.639312809217652,7.22878304769133,1.50401373190767,0.579386075843295,2.3858578411533,0.486634870302636,6.14476311566441,1.77383517970051,3.07421749925941,1.57174890597255,1.45718115317017,1.48313777113772,0,0,0,0,0,0,3.18019851786728,1.72046919021225,1.04142150482278,0.56530794192401,0.419499436209906,0.825354125820202,5.01587919688345,0.775250277507987,0.35576626268671,1.67360306382335,2.81980521976403,0,0.488124115096339,2.57364156242108,2.43042584364528,5.00078478390847,4.71511682514957,4.16662477788292,3.06633274931766,2.84779697870439,2.01521918323448,0,0,0.872188104285069,0,1.8994576749687,0,10.3261183469573,4.61068896857864,0,1.06748995729705,0,2.8008993185979,1.48181739276657,3.92308567472301,1.96764655938411,0,2.34321431833797,1.24864030732128,5.13424639390004,2.39117888882882,9.15989089421366,10.5217413839285,11.6574169562866,2.44985005505872,8.47556789451199,1.75653827998801,3.56400857184616,0.741800787835671,1.82032272387605,0.718618141816238,11.1101835209684,13.3876816263002,7.20366700258876,6.58466431321257,1.83892677479412,1.05166641234618,1.81491493056034,17.5801842975085,0.640672166455702,1.27159140695737,9.90300617078528,2.67936576019941,4.12224864073007,1.11670113798954,17.3839622208504,4.96928726322113,13.6314238091822,0.644349290496095,0.969876340912871,10.2952781829818,5.54136540252021,6.95198428472999,0.773043412653187,0.818238361772504,0.860413786167011,9.39197537197884,7.28913725768169,6.73924868643207,6.94529068602982,5.80337957013945,8.75945661781992,6.25798129319264,1.28648187638577,2.76269842704961,0,0,3.31259040111563,3.20310911148393,3.61516544825223,2.20587945464788,2.61455332910887,4.03360052488864,2.02246962240247,2.94332197688019,1.92373578473195,2.21446636387394,1.40241773803446,1.2347220339942,1.47008711385542,0,0,0,8.82926198829301,3.68965315629341,1.54411029268673,0.548751427043128,3.37205259772859,1.50793458617446,1.11106134190236,1.95484983186195,2.07986957055916,1.44331342025273,2.55046890945169,0.587043471179108,1.15493158208859,1.85194205030644,1.52203321787679,7.90204397959275,12.8772924314231,0.492434012174795,0.234004265139238,2.37809859661965,0,0.16798212819886,0.992425680696705,2.86587272649115,4.35950907770943,3.83382679165211,0.985326475791887,1.05658120815871,0.414656231081544,0,0.25248486685276,13.0805662241868,15.6615254478894,29.3043618025117,13.6857956818164,7.19792448923265,8.40960561962969,5.14487578735041,7.06425831375773,3.92364061949952,3.15354629030085,0.129271715757778,0,1.690605505112,0.797814349754612,1.04007436911366,7.45901385360212,9.92943924162948,5.86128793835419,0.285955987316295,0,4.93944202068461,1.95441710576241,0.710783897485092,2.37585561880029,0,0,0.399891964728228,0,0,0,0.479249710983165,0,4.27910715122155,1.30303176000821,2.26023954805422,4.47652408099739,2.35378802386407,0,0,0,1.77866236955724,2.60279707715243,0,1.17261385734044,1.27587750330633,0,0,0,0.12269149171914,0.500170521059677,0.542530047399471,0.207970861530807,1.42743191037729,0.315404830067869,1.17141414992713,0.300946099727719,0,0,1.99267679560631,2.39679919104214,4.60483156680839,0.587403472388222,0,0,0,0,0.606255142892519,0,2.11673205330776,0,0.306923946576125,0.280660094433074,0.128139149255701,1.02341449813341,0,0,2.92998418225046,0.887808626565635,4.84550220481474,5.71179872101983,3.02146983995894,2.53804844142407,0,0,3.78887678943202,5.09855270418808,0,0.451199612907412,1.61732207919271,4.70609861506113,4.38417673959782,0.949964660035881,1.13733384070897,1.53084334748864,3.45465465763423,1.54227252690289,2.70946437543853,1.00337954770971,2.03901018436031,0.831076008928724,3.35812132083267,14.2518919819857,12.8103371002201,2.3080511260475,2.29610251989794,0.325378394664303,0.103041011647722,5.21945949464557,6.93079799332939,2.29706215198469,0.650060246036521,4.82051789532479,1.06337790121334,2.61882649094895,3.68408819342711,4.41077031950498,4.61907052933577,3.33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| ||
|short_description=p3@CIT | |||
}} | }} |
Latest revision as of 19:03, 16 September 2015
Short description: | p3@CIT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CIT_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000261833, ENST00000392521, NM_001206999, NM_007174, uc001txi.1, uc001txj.1_5end |
EntrezGene: | CIT |
HGNC: | 1985 |
UniProt: | O14578Q2M5E1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 1.04e-13 | 41 |
epithelial cell | 1.64e-12 | 253 |
neurectodermal cell | 2.23e-11 | 59 |
ectodermal cell | 1.87e-08 | 72 |
neural cell | 4.18e-08 | 25 |
neuron associated cell | 4.36e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 4.36e-08 | 17 |
embryonic cell | 4.36e-08 | 250 |
melanocyte | 6.48e-08 | 10 |
melanoblast | 6.48e-08 | 10 |
fibroblast | 4.89e-07 | 76 |
glial cell (sensu Vertebrata) | 7.08e-07 | 15 |
glial cell | 7.08e-07 | 15 |
glioblast | 7.08e-07 | 15 |
glioblast (sensu Vertebrata) | 7.08e-07 | 15 |
skin fibroblast | 8.35e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
skin of body | 5.98e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.23e-32 | 239 |
cancer | 6.66e-32 | 235 |
cell type cancer | 2.07e-18 | 143 |
carcinoma | 7.60e-14 | 106 |
organ system cancer | 1.38e-13 | 137 |
hematologic cancer | 6.52e-10 | 51 |
immune system cancer | 6.52e-10 | 51 |
leukemia | 1.58e-07 | 39 |