FFCP PHASE1:Hg19::chr4:174255536..174255547,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3148 | |EntrezGene=3148 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5000 | |HGNC=5000 | ||
|TSSclassifier=strong | |||
|UniProt=P26583 | |UniProt=P26583 | ||
|association_with_transcript=0bp_to_ENST00000446922_5end | |association_with_transcript=0bp_to_ENST00000446922_5end | ||
|cluster_id=chr4:174255536..174255547,- | |||
|coexpression_cluster_id=C109 | |||
|description=CAGE_peak_2_at_HMGB2_5end | |description=CAGE_peak_2_at_HMGB2_5end | ||
|id=chr4:174255536..174255547,- | |id=chr4:174255536..174255547,- | ||
|ontology_enrichment_celltype=CL:0000542!3.70e-15!53;CL:0000051!3.70e-15!53;CL:0000838!1.30e-14!52;CL:0000945!2.17e-09!24;CL:0000826!2.17e-09!24;CL:0000037!2.91e-07!172;CL:0000566!2.91e-07!172;CL:0000084!4.34e-07!25;CL:0000827!4.34e-07!25;CL:0002032!7.79e-07!165;CL:0000837!7.79e-07!165 | |ontology_enrichment_celltype=CL:0000542!3.70e-15!53;CL:0000051!3.70e-15!53;CL:0000838!1.30e-14!52;CL:0000945!2.17e-09!24;CL:0000826!2.17e-09!24;CL:0000037!2.91e-07!172;CL:0000566!2.91e-07!172;CL:0000084!4.34e-07!25;CL:0000827!4.34e-07!25;CL:0002032!7.79e-07!165;CL:0000837!7.79e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.78e-09;24!CL:0000542;3.40e-09;53!CL:0000084;4.38e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.67e-15,53;CL:0000051,3.67e-15,53;CL:0000838,1.29e-14,52;CL:0000945,2.16e-09,24;CL:0000826,2.16e-09,24;CL:0000084,4.32e-07,25;CL:0000827,4.32e-07,25;CL:0000037,8.25e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000051;3.40e-09;53 | |||
|ontology_enrichment_disease=DOID:162!5.15e-34!235;DOID:14566!5.28e-32!239;DOID:2531!1.30e-22!51;DOID:0060083!1.30e-22!51;DOID:0050686!8.19e-21!137;DOID:1240!6.04e-18!39;DOID:0050687!1.40e-15!143;DOID:8692!2.27e-13!31;DOID:305!8.99e-12!106;DOID:0060058!2.88e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:1240;4.30e-14;39!DOID:2531;6.01e-14;51!DOID:0060083;6.01e-14;51!DOID:8692;4.64e-13;31!DOID:0060058;2.74e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:162,6.53e-34,235;DOID:14566,6.26e-32,239;DOID:2531,1.28e-22,51;DOID:0060083,1.28e-22,51;DOID:0050686,1.03e-20,137;DOID:1240,5.98e-18,39;DOID:0050687,1.51e-15,143;DOID:8692,2.25e-13,31;DOID:305,8.93e-12,106;DOID:0060058,2.87e-07,10 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p2@HMGB2 | |short_description=p2@HMGB2 | ||
}} | }} |
Latest revision as of 19:08, 16 September 2015
Short description: | p2@HMGB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HMGB2_5end |
Coexpression cluster: | C109_Reticulocytes_non_acute_Hodgkin_Burkitt_retinoblastoma_lymphoma |
Association with transcript: | 0bp_to_ENST00000446922_5end |
EntrezGene: | HMGB2 |
HGNC: | 5000 |
UniProt: | P26583 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.67e-15 | 53 |
common lymphoid progenitor | 3.67e-15 | 53 |
lymphoid lineage restricted progenitor cell | 1.29e-14 | 52 |
lymphocyte of B lineage | 2.16e-09 | 24 |
pro-B cell | 2.16e-09 | 24 |
T cell | 4.32e-07 | 25 |
pro-T cell | 4.32e-07 | 25 |
hematopoietic stem cell | 8.25e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.53e-34 | 235 |
disease of cellular proliferation | 6.26e-32 | 239 |
hematologic cancer | 1.28e-22 | 51 |
immune system cancer | 1.28e-22 | 51 |
organ system cancer | 1.03e-20 | 137 |
leukemia | 5.98e-18 | 39 |
cell type cancer | 1.51e-15 | 143 |
myeloid leukemia | 2.25e-13 | 31 |
carcinoma | 8.93e-12 | 106 |
lymphoma | 2.87e-07 | 10 |