FFCP PHASE1:Hg19::chr19:19144666..19144730,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=93436 | |EntrezGene=93436 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25049 | |HGNC=25049 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYG2,F5H6J3,F5H052,F5GWK8 | |UniProt=F5GYG2,F5H6J3,F5H052,F5GWK8 | ||
|association_with_transcript=0bp_to_ENST00000379532,ENST00000535288,ENST00000538663,ENST00000545190,uc002nle.2_5end | |association_with_transcript=0bp_to_ENST00000379532,ENST00000535288,ENST00000538663,ENST00000545190,uc002nle.2_5end | ||
|cluster_id=chr19:19144666..19144730,+ | |||
|description=CAGE_peak_2_at_ARMC6_5end | |description=CAGE_peak_2_at_ARMC6_5end | ||
|id=chr19:19144666..19144730,+ | |id=chr19:19144666..19144730,+ | ||
|ontology_enrichment_celltype=CL:0000548!5.71e-28!679;CL:0000004!5.71e-28!679;CL:0000255!5.71e-28!679;CL:0000012!1.15e-27!682;CL:0002321!2.60e-24!248;CL:0000220!4.61e-24!246;CL:0000144!1.31e-19!625;CL:0000003!1.69e-18!722;CL:0000222!1.10e-14!119;CL:0002371!1.14e-14!591;CL:0000066!1.61e-13!254;CL:0000055!5.88e-13!180;CL:0000393!9.15e-10!60;CL:0000211!9.15e-10!60;CL:0000183!1.58e-09!59;CL:0000680!2.70e-09!57;CL:0000056!2.70e-09!57;CL:0000355!2.70e-09!57;CL:0000187!9.01e-09!54;CL:0000192!2.22e-08!42;CL:0000514!2.22e-08!42;CL:0000359!8.71e-08!32;CL:0000063!1.11e-07!578;CL:0000221!2.79e-07!71 | |ontology_enrichment_celltype=CL:0000548!5.71e-28!679;CL:0000004!5.71e-28!679;CL:0000255!5.71e-28!679;CL:0000012!1.15e-27!682;CL:0002321!2.60e-24!248;CL:0000220!4.61e-24!246;CL:0000144!1.31e-19!625;CL:0000003!1.69e-18!722;CL:0000222!1.10e-14!119;CL:0002371!1.14e-14!591;CL:0000066!1.61e-13!254;CL:0000055!5.88e-13!180;CL:0000393!9.15e-10!60;CL:0000211!9.15e-10!60;CL:0000183!1.58e-09!59;CL:0000680!2.70e-09!57;CL:0000056!2.70e-09!57;CL:0000355!2.70e-09!57;CL:0000187!9.01e-09!54;CL:0000192!2.22e-08!42;CL:0000514!2.22e-08!42;CL:0000359!8.71e-08!32;CL:0000063!1.11e-07!578;CL:0000221!2.79e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000359;2.11e-07;32 | |ontology_enrichment_celltype_v019=CL:0000359;2.11e-07;32 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,8.04e-25,250;CL:0000222,4.81e-15,121;CL:0000066,1.17e-13,253;CL:0000393,1.02e-09,61;CL:0000211,1.02e-09,61;CL:0000680,3.02e-09,58;CL:0000056,3.02e-09,58;CL:0000355,3.02e-09,58;CL:0000187,1.01e-08,55;CL:0000192,2.63e-08,43;CL:0000514,2.63e-08,43;CL:0000359,8.44e-08,32;CL:0000221,5.12e-07,72 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:14566!2.61e-16!239;DOID:2531!3.48e-16!51;DOID:0060083!3.48e-16!51;DOID:162!6.67e-15!235;DOID:1240!1.62e-12!39;DOID:0050686!9.48e-12!137;DOID:8692!3.34e-10!31 | |ontology_enrichment_disease=DOID:14566!2.61e-16!239;DOID:2531!3.48e-16!51;DOID:0060083!3.48e-16!51;DOID:162!6.67e-15!235;DOID:1240!1.62e-12!39;DOID:0050686!9.48e-12!137;DOID:8692!3.34e-10!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;4.29e-10;31!DOID:2531;4.51e-10;51!DOID:0060083;4.51e-10;51!DOID:1240;5.30e-10;39 | |ontology_enrichment_disease_v019=DOID:8692;4.29e-10;31!DOID:2531;4.51e-10;51!DOID:0060083;4.51e-10;51!DOID:1240;5.30e-10;39 | ||
|ontology_enrichment_disease_v019_2=DOID:14566,2.46e-16,239;DOID:2531,3.23e-16,51;DOID:0060083,3.23e-16,51;DOID:162,6.31e-15,235;DOID:1240,1.53e-12,39;DOID:0050686,1.02e-11,137;DOID:8692,3.20e-10,31 | |||
|ontology_enrichment_uberon=UBERON:0000486!1.50e-10!82;UBERON:0001637!3.25e-10!42;UBERON:0003509!3.25e-10!42;UBERON:0004572!3.25e-10!42;UBERON:0002049!6.02e-10!79;UBERON:0007798!6.02e-10!79;UBERON:0004290!6.27e-10!70;UBERON:0000055!8.97e-10!69;UBERON:0001981!6.61e-09!60;UBERON:0007500!6.61e-09!60;UBERON:0004537!6.61e-09!60;UBERON:0006965!6.61e-09!60;UBERON:0000914!7.26e-09!83;UBERON:0002329!7.26e-09!83;UBERON:0003077!7.26e-09!83;UBERON:0003059!7.26e-09!83;UBERON:0007282!7.26e-09!83;UBERON:0009618!7.26e-09!83;UBERON:0007285!7.26e-09!83;UBERON:0004872!2.12e-07!84;UBERON:0001134!2.29e-07!61;UBERON:0002036!2.29e-07!61;UBERON:0003082!2.29e-07!61;UBERON:0003104!3.23e-07!238;UBERON:0009142!3.23e-07!238;UBERON:0003914!3.30e-07!118;UBERON:0005256!7.32e-07!143;UBERON:0004573!8.16e-07!33;UBERON:0004571!8.16e-07!33 | |ontology_enrichment_uberon=UBERON:0000486!1.50e-10!82;UBERON:0001637!3.25e-10!42;UBERON:0003509!3.25e-10!42;UBERON:0004572!3.25e-10!42;UBERON:0002049!6.02e-10!79;UBERON:0007798!6.02e-10!79;UBERON:0004290!6.27e-10!70;UBERON:0000055!8.97e-10!69;UBERON:0001981!6.61e-09!60;UBERON:0007500!6.61e-09!60;UBERON:0004537!6.61e-09!60;UBERON:0006965!6.61e-09!60;UBERON:0000914!7.26e-09!83;UBERON:0002329!7.26e-09!83;UBERON:0003077!7.26e-09!83;UBERON:0003059!7.26e-09!83;UBERON:0007282!7.26e-09!83;UBERON:0009618!7.26e-09!83;UBERON:0007285!7.26e-09!83;UBERON:0004872!2.12e-07!84;UBERON:0001134!2.29e-07!61;UBERON:0002036!2.29e-07!61;UBERON:0003082!2.29e-07!61;UBERON:0003104!3.23e-07!238;UBERON:0009142!3.23e-07!238;UBERON:0003914!3.30e-07!118;UBERON:0005256!7.32e-07!143;UBERON:0004573!8.16e-07!33;UBERON:0004571!8.16e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.35e-07;42!UBERON:0003509;1.35e-07;42!UBERON:0004572;1.35e-07;42 | |ontology_enrichment_uberon_v019=UBERON:0001637;1.35e-07;42!UBERON:0003509;1.35e-07;42!UBERON:0004572;1.35e-07;42 | ||
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| ||
|short_description=p2@ARMC6 | |short_description=p2@ARMC6 | ||
}} | }} |
Latest revision as of 19:14, 16 September 2015
Short description: | p2@ARMC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ARMC6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000379532, ENST00000535288, ENST00000538663, ENST00000545190, uc002nle.2_5end |
EntrezGene: | ARMC6 |
HGNC: | 25049 |
UniProt: | F5GYG2F5H6J3F5H052F5GWK8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 8.04e-25 | 250 |
mesodermal cell | 4.81e-15 | 121 |
epithelial cell | 1.17e-13 | 253 |
electrically responsive cell | 1.02e-09 | 61 |
electrically active cell | 1.02e-09 | 61 |
muscle precursor cell | 3.02e-09 | 58 |
myoblast | 3.02e-09 | 58 |
multi-potent skeletal muscle stem cell | 3.02e-09 | 58 |
muscle cell | 1.01e-08 | 55 |
smooth muscle cell | 2.63e-08 | 43 |
smooth muscle myoblast | 2.63e-08 | 43 |
vascular associated smooth muscle cell | 8.44e-08 | 32 |
ectodermal cell | 5.12e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.15e-12 | 78 |
multilaminar epithelium | 1.40e-10 | 83 |
vasculature | 2.57e-10 | 78 |
vascular system | 2.57e-10 | 78 |
artery | 2.99e-10 | 42 |
arterial blood vessel | 2.99e-10 | 42 |
arterial system | 2.99e-10 | 42 |
vessel | 3.60e-10 | 68 |
somite | 5.95e-10 | 71 |
presomitic mesoderm | 5.95e-10 | 71 |
presumptive segmental plate | 5.95e-10 | 71 |
dermomyotome | 5.95e-10 | 71 |
trunk paraxial mesoderm | 5.95e-10 | 71 |
paraxial mesoderm | 1.39e-09 | 72 |
presumptive paraxial mesoderm | 1.39e-09 | 72 |
epithelial tube open at both ends | 2.61e-09 | 59 |
blood vessel | 2.61e-09 | 59 |
blood vasculature | 2.61e-09 | 59 |
vascular cord | 2.61e-09 | 59 |
dense mesenchyme tissue | 4.37e-09 | 73 |
unilaminar epithelium | 3.25e-08 | 148 |
splanchnic layer of lateral plate mesoderm | 1.06e-07 | 83 |
skeletal muscle tissue | 2.16e-07 | 62 |
striated muscle tissue | 2.16e-07 | 62 |
myotome | 2.16e-07 | 62 |
trunk | 2.21e-07 | 199 |
epithelial tube | 2.61e-07 | 117 |
systemic artery | 7.67e-07 | 33 |
systemic arterial system | 7.67e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.46e-16 | 239 |
hematologic cancer | 3.23e-16 | 51 |
immune system cancer | 3.23e-16 | 51 |
cancer | 6.31e-15 | 235 |
leukemia | 1.53e-12 | 39 |
organ system cancer | 1.02e-11 | 137 |
myeloid leukemia | 3.20e-10 | 31 |