FFCP PHASE1:Hg19::chr1:243419073..243419095,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:243419073..243419095,-
|short_description=p3@CEP170
|description=CAGE_peak_3_at_CEP170_5end
|association_with_transcript=-365bp_to_ENST00000424081,ENST0000...") |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9859 | |EntrezGene=9859 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28920 | |HGNC=28920 | ||
|TSSclassifier=strong | |||
|UniProt=E7ES90,F8W8A3,Q5SW79 | |UniProt=E7ES90,F8W8A3,Q5SW79 | ||
|association_with_transcript=-365bp_to_ENST00000424081,ENST00000532008,NM_001042404,NM_001042405,NM_014812,uc001hzs.2,uc001hzt.2,uc001hzu.2_5end | |||
|cluster_id=chr1:243419073..243419095,- | |||
|description=CAGE_peak_3_at_CEP170_5end | |||
|id=chr1:243419073..243419095,- | |||
|ontology_enrichment_celltype=CL:0000048!3.32e-16!430;CL:0000723!7.59e-16!436;CL:0000034!6.59e-15!444;CL:0000222!5.35e-09!119;CL:0000057!8.99e-09!75;CL:0000766!9.85e-09!76;CL:0000359!2.13e-08!32;CL:0000055!6.16e-08!180;CL:0000557!1.34e-07!71;CL:0000134!1.41e-07!358;CL:0000680!1.51e-07!57;CL:0000056!1.51e-07!57;CL:0000355!1.51e-07!57;CL:0000763!2.36e-07!112;CL:0000049!2.36e-07!112;CL:0002194!2.65e-07!63;CL:0000576!2.65e-07!63;CL:0000040!2.65e-07!63;CL:0000559!2.65e-07!63;CL:0002009!2.69e-07!65;CL:0000839!4.46e-07!70;CL:0002320!5.56e-07!365;CL:0000192!9.48e-07!42;CL:0000514!9.48e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.32e-08;32!CL:0000860;1.76e-07;33!CL:0002057;1.76e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,9.74e-17,427;CL:0000723,2.09e-16,433;CL:0000034,1.60e-15,441;CL:0000766,2.74e-09,72;CL:0000057,4.62e-09,76;CL:0000222,4.71e-09,121;CL:0000359,2.00e-08,32;CL:0000557,4.12e-08,67;CL:0002194,7.51e-08,59;CL:0000576,7.51e-08,59;CL:0000040,7.51e-08,59;CL:0000559,7.51e-08,59;CL:0002009,7.90e-08,61;CL:0000134,8.06e-08,354;CL:0000680,9.38e-08,58;CL:0000056,9.38e-08,58;CL:0000355,9.38e-08,58;CL:0000763,1.23e-07,108;CL:0000049,1.23e-07,108;CL:0000839,1.47e-07,66;CL:0002320,3.22e-07,361;CL:0000192,5.89e-07,43;CL:0000514,5.89e-07,43;CL:0000187,6.74e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001981!3.33e-12!60;UBERON:0007500!3.33e-12!60;UBERON:0004537!3.33e-12!60;UBERON:0006965!3.33e-12!60;UBERON:0000055!4.33e-12!69;UBERON:0002049!1.83e-11!79;UBERON:0007798!1.83e-11!79;UBERON:0004872!2.10e-11!84;UBERON:0001637!3.16e-11!42;UBERON:0003509!3.16e-11!42;UBERON:0004572!3.16e-11!42;UBERON:0004535!1.27e-10!110;UBERON:0003081!2.17e-10!216;UBERON:0004573!1.29e-09!33;UBERON:0004571!1.29e-09!33;UBERON:0002204!1.62e-09!167;UBERON:0001009!1.66e-09!113;UBERON:0004290!2.92e-07!70;UBERON:0002384!6.05e-07!375;UBERON:0000914!6.97e-07!83;UBERON:0002329!6.97e-07!83;UBERON:0003077!6.97e-07!83;UBERON:0003059!6.97e-07!83;UBERON:0007282!6.97e-07!83;UBERON:0009618!6.97e-07!83;UBERON:0007285!6.97e-07!83;UBERON:0000479!7.85e-07!787;UBERON:0001017!8.80e-07!82;UBERON:0000947!8.81e-07!21;UBERON:0010191!8.81e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.89e-09;33!UBERON:0004571;4.89e-09;33!UBERON:0001637;1.50e-08;42!UBERON:0003509;1.50e-08;42!UBERON:0004572;1.50e-08;42!UBERON:0000947;5.44e-07;21!UBERON:0010191;5.44e-07;21!UBERON:0007500;7.47e-07;56!UBERON:0001981;7.47e-07;56!UBERON:0004537;7.47e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,3.21e-12,203;UBERON:0007500,8.23e-12,59;UBERON:0001981,8.23e-12,59;UBERON:0004537,8.23e-12,59;UBERON:0006965,8.23e-12,59;UBERON:0000055,1.40e-11,68;UBERON:0001637,2.89e-11,42;UBERON:0003509,2.89e-11,42;UBERON:0004572,2.89e-11,42;UBERON:0000926,3.58e-11,315;UBERON:0004120,3.58e-11,315;UBERON:0006603,3.58e-11,315;UBERON:0004872,4.18e-11,83;UBERON:0002049,5.50e-11,78;UBERON:0007798,5.50e-11,78;UBERON:0004535,4.06e-10,109;UBERON:0004573,1.20e-09,33;UBERON:0004571,1.20e-09,33;UBERON:0002204,1.24e-09,167;UBERON:0001009,5.14e-09,112;UBERON:0000479,9.95e-08,773;UBERON:0003077,1.22e-07,72;UBERON:0007285,1.22e-07,72;UBERON:0007524,1.95e-07,73;UBERON:0002329,1.95e-07,71;UBERON:0003059,1.95e-07,71;UBERON:0007282,1.95e-07,71;UBERON:0004290,1.95e-07,71;UBERON:0009618,1.95e-07,71;UBERON:0002384,3.67e-07,371;UBERON:0000947,8.39e-07,21;UBERON:0010191,8.39e-07,21 | |||
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| ||
|short_description=p3@CEP170 | |||
}} | }} |
Latest revision as of 19:30, 16 September 2015
Short description: | p3@CEP170 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CEP170_5end |
Coexpression cluster: | NA |
Association with transcript: | -365bp_to_ENST00000424081, ENST00000532008, NM_001042404, NM_001042405, NM_014812, uc001hzs.2, uc001hzt.2, uc001hzu.2_5end |
EntrezGene: | CEP170 |
HGNC: | 28920 |
UniProt: | E7ES90F8W8A3Q5SW79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 9.74e-17 | 427 |
somatic stem cell | 2.09e-16 | 433 |
stem cell | 1.60e-15 | 441 |
myeloid leukocyte | 2.74e-09 | 72 |
fibroblast | 4.62e-09 | 76 |
mesodermal cell | 4.71e-09 | 121 |
vascular associated smooth muscle cell | 2.00e-08 | 32 |
granulocyte monocyte progenitor cell | 4.12e-08 | 67 |
monopoietic cell | 7.51e-08 | 59 |
monocyte | 7.51e-08 | 59 |
monoblast | 7.51e-08 | 59 |
promonocyte | 7.51e-08 | 59 |
macrophage dendritic cell progenitor | 7.90e-08 | 61 |
mesenchymal cell | 8.06e-08 | 354 |
muscle precursor cell | 9.38e-08 | 58 |
myoblast | 9.38e-08 | 58 |
multi-potent skeletal muscle stem cell | 9.38e-08 | 58 |
myeloid cell | 1.23e-07 | 108 |
common myeloid progenitor | 1.23e-07 | 108 |
myeloid lineage restricted progenitor cell | 1.47e-07 | 66 |
connective tissue cell | 3.22e-07 | 361 |
smooth muscle cell | 5.89e-07 | 43 |
smooth muscle myoblast | 5.89e-07 | 43 |
muscle cell | 6.74e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 3.21e-12 | 203 |
epithelial tube open at both ends | 8.23e-12 | 59 |
blood vessel | 8.23e-12 | 59 |
blood vasculature | 8.23e-12 | 59 |
vascular cord | 8.23e-12 | 59 |
vessel | 1.40e-11 | 68 |
artery | 2.89e-11 | 42 |
arterial blood vessel | 2.89e-11 | 42 |
arterial system | 2.89e-11 | 42 |
mesoderm | 3.58e-11 | 315 |
mesoderm-derived structure | 3.58e-11 | 315 |
presumptive mesoderm | 3.58e-11 | 315 |
splanchnic layer of lateral plate mesoderm | 4.18e-11 | 83 |
vasculature | 5.50e-11 | 78 |
vascular system | 5.50e-11 | 78 |
cardiovascular system | 4.06e-10 | 109 |
systemic artery | 1.20e-09 | 33 |
systemic arterial system | 1.20e-09 | 33 |
musculoskeletal system | 1.24e-09 | 167 |
circulatory system | 5.14e-09 | 112 |
tissue | 9.95e-08 | 773 |
paraxial mesoderm | 1.22e-07 | 72 |
presumptive paraxial mesoderm | 1.22e-07 | 72 |
dense mesenchyme tissue | 1.95e-07 | 73 |
somite | 1.95e-07 | 71 |
presomitic mesoderm | 1.95e-07 | 71 |
presumptive segmental plate | 1.95e-07 | 71 |
dermomyotome | 1.95e-07 | 71 |
trunk paraxial mesoderm | 1.95e-07 | 71 |
connective tissue | 3.67e-07 | 371 |
aorta | 8.39e-07 | 21 |
aortic system | 8.39e-07 | 21 |