FFCP PHASE1:Hg19::chr17:62658408..62658499,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64750 | |EntrezGene=64750 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16809 | |HGNC=16809 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HAU4,Q96DE7 | |UniProt=Q9HAU4,Q96DE7 | ||
|association_with_transcript=-22bp_to_ENST00000262435,NM_022739,uc002jep.1,uc002jeq.1,uc002jer.1_5end | |association_with_transcript=-22bp_to_ENST00000262435,NM_022739,uc002jep.1,uc002jeq.1,uc002jer.1_5end | ||
|cluster_id=chr17:62658408..62658499,- | |||
|description=CAGE_peak_1_at_SMURF2_5end | |description=CAGE_peak_1_at_SMURF2_5end | ||
|id=chr17:62658408..62658499,- | |id=chr17:62658408..62658499,- | ||
|ontology_enrichment_celltype=CL:0000222!4.54e-11!119;CL:0000359!4.75e-10!32;CL:0002139!1.83e-09!24;CL:0000071!3.45e-08!18;CL:0002546!3.45e-08!18;CL:0000220!7.98e-08!246;CL:0002321!1.03e-07!248;CL:0000192!1.22e-07!42;CL:0000514!1.22e-07!42;CL:0000076!3.13e-07!62;CL:0000055!3.29e-07!180 | |ontology_enrichment_celltype=CL:0000222!4.54e-11!119;CL:0000359!4.75e-10!32;CL:0002139!1.83e-09!24;CL:0000071!3.45e-08!18;CL:0002546!3.45e-08!18;CL:0000220!7.98e-08!246;CL:0002321!1.03e-07!248;CL:0000192!1.22e-07!42;CL:0000514!1.22e-07!42;CL:0000076!3.13e-07!62;CL:0000055!3.29e-07!180 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.43e-09;24!CL:0000359;2.00e-09;32!CL:0000071;3.03e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.50e-11,121;CL:0000359,4.75e-10,32;CL:0002139,1.83e-09,24;CL:0000071,3.45e-08,18;CL:0002546,3.45e-08,18;CL:0002321,9.03e-08,250;CL:0000192,2.10e-07,43;CL:0000514,2.10e-07,43;CL:0000076,8.23e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;3.03e-08;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001981!8.15e-18!60;UBERON:0007500!8.15e-18!60;UBERON:0004537!8.15e-18!60;UBERON:0006965!8.15e-18!60;UBERON:0000055!5.23e-17!69;UBERON:0002049!6.95e-16!79;UBERON:0007798!6.95e-16!79;UBERON:0001637!9.70e-15!42;UBERON:0003509!9.70e-15!42;UBERON:0004572!9.70e-15!42;UBERON:0004872!3.11e-14!84;UBERON:0004573!1.24e-11!33;UBERON:0004571!1.24e-11!33;UBERON:0004535!4.21e-11!110;UBERON:0006914!1.62e-10!25;UBERON:0001009!4.71e-10!113;UBERON:0000487!1.95e-09!22;UBERON:0000467!8.53e-09!625;UBERON:0000480!1.54e-08!626;UBERON:0001986!3.45e-08!18;UBERON:0004638!3.45e-08!18;UBERON:0004852!3.45e-08!18;UBERON:0000914!3.95e-08!83;UBERON:0002329!3.95e-08!83;UBERON:0003077!3.95e-08!83;UBERON:0003059!3.95e-08!83;UBERON:0007282!3.95e-08!83;UBERON:0009618!3.95e-08!83;UBERON:0007285!3.95e-08!83;UBERON:0000490!4.40e-08!138;UBERON:0000947!4.70e-08!21;UBERON:0010191!4.70e-08!21;UBERON:0000468!4.98e-08!659;UBERON:0000486!1.28e-07!82;UBERON:0000483!6.64e-07!309;UBERON:0000119!8.97e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.57e-11;33!UBERON:0004571;5.57e-11;33!UBERON:0001637;6.42e-11;42!UBERON:0003509;6.42e-11;42!UBERON:0004572;6.42e-11;42!UBERON:0006914;1.40e-10;25!UBERON:0007500;5.57e-10;56!UBERON:0001981;5.57e-10;56!UBERON:0004537;5.57e-10;56!UBERON:0000487;1.71e-09;22!UBERON:0000055;9.14e-09;65!UBERON:0004638;3.03e-08;18!UBERON:0001986;3.03e-08;18!UBERON:0004852;3.03e-08;18!UBERON:0000947;4.07e-08;21!UBERON:0010191;4.07e-08;21!UBERON:0002049;1.13e-07;75!UBERON:0007798;1.13e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007500,2.03e-17,59;UBERON:0001981,2.03e-17,59;UBERON:0004537,2.03e-17,59;UBERON:0006965,2.03e-17,59;UBERON:0000055,1.27e-16,68;UBERON:0002049,1.64e-15,78;UBERON:0007798,1.64e-15,78;UBERON:0001637,9.70e-15,42;UBERON:0003509,9.70e-15,42;UBERON:0004572,9.70e-15,42;UBERON:0004872,7.04e-14,83;UBERON:0004573,1.24e-11,33;UBERON:0004571,1.24e-11,33;UBERON:0004535,8.46e-11,109;UBERON:0006914,1.62e-10,25;UBERON:0001009,9.14e-10,112;UBERON:0000487,1.95e-09,22;UBERON:0000490,6.37e-09,148;UBERON:0004638,3.45e-08,18;UBERON:0001986,3.45e-08,18;UBERON:0004852,3.45e-08,18;UBERON:0000947,4.70e-08,21;UBERON:0010191,4.70e-08,21;UBERON:0000926,1.10e-07,315;UBERON:0004120,1.10e-07,315;UBERON:0006603,1.10e-07,315;UBERON:0002050,1.20e-07,564;UBERON:0000486,1.77e-07,83;UBERON:0000483,4.78e-07,306;UBERON:0000923,5.41e-07,560;UBERON:0010316,5.41e-07,560;UBERON:0005291,5.41e-07,560;UBERON:0006598,5.41e-07,560;UBERON:0010317,5.41e-07,560;UBERON:0002532,5.41e-07,560;UBERON:0000119,6.50e-07,309 | |||
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| ||
|short_description=p1@SMURF2 | |short_description=p1@SMURF2 | ||
}} | }} |
Latest revision as of 19:58, 16 September 2015
Short description: | p1@SMURF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMURF2_5end |
Coexpression cluster: | NA |
Association with transcript: | -22bp_to_ENST00000262435, NM_022739, uc002jep.1, uc002jeq.1, uc002jer.1_5end |
EntrezGene: | SMURF2 |
HGNC: | 16809 |
UniProt: | Q9HAU4Q96DE7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.50e-11 | 121 |
vascular associated smooth muscle cell | 4.75e-10 | 32 |
endothelial cell of vascular tree | 1.83e-09 | 24 |
blood vessel endothelial cell | 3.45e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.45e-08 | 18 |
embryonic cell | 9.03e-08 | 250 |
smooth muscle cell | 2.10e-07 | 43 |
smooth muscle myoblast | 2.10e-07 | 43 |
squamous epithelial cell | 8.23e-07 | 63 |