FFCP PHASE1:Hg19::chr7:142176848..142176863,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12238 | |HGNC=12238 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-58bp_to_ENST00000390369_5end | |association_with_transcript=-58bp_to_ENST00000390369_5end | ||
|cluster_id=chr7:142176848..142176863,- | |||
|coexpression_cluster_id=C2285 | |||
|description=CAGE_peak_2_at_TRBV7-4_5end | |description=CAGE_peak_2_at_TRBV7-4_5end | ||
|id=chr7:142176848..142176863,- | |id=chr7:142176848..142176863,- | ||
|ontology_enrichment_celltype=CL:0000791!5.59e-34!18;CL:0000789!5.59e-34!18;CL:0002420!5.59e-34!18;CL:0002419!5.59e-34!18;CL:0000790!5.59e-34!18;CL:0000084!1.01e-29!25;CL:0000827!1.01e-29!25;CL:0000838!9.57e-21!52;CL:0000542!3.23e-20!53;CL:0000051!3.23e-20!53;CL:0000625!1.22e-19!11;CL:0000624!1.63e-14!6;CL:0002087!3.33e-12!119;CL:0000738!1.60e-11!140;CL:0002031!1.19e-09!124;CL:0000037!5.04e-09!172;CL:0000566!5.04e-09!172;CL:0000898!1.97e-08!3;CL:0002032!2.15e-08!165;CL:0000837!2.15e-08!165;CL:0000988!4.98e-08!182 | |ontology_enrichment_celltype=CL:0000791!5.59e-34!18;CL:0000789!5.59e-34!18;CL:0002420!5.59e-34!18;CL:0002419!5.59e-34!18;CL:0000790!5.59e-34!18;CL:0000084!1.01e-29!25;CL:0000827!1.01e-29!25;CL:0000838!9.57e-21!52;CL:0000542!3.23e-20!53;CL:0000051!3.23e-20!53;CL:0000625!1.22e-19!11;CL:0000624!1.63e-14!6;CL:0002087!3.33e-12!119;CL:0000738!1.60e-11!140;CL:0002031!1.19e-09!124;CL:0000037!5.04e-09!172;CL:0000566!5.04e-09!172;CL:0000898!1.97e-08!3;CL:0002032!2.15e-08!165;CL:0000837!2.15e-08!165;CL:0000988!4.98e-08!182 | ||
|ontology_enrichment_celltype_v019=CL:0000084;2.83e-29;25!CL:0000791;2.00e-27;18!CL:0000789;2.00e-27;18!CL:0002419;2.00e-27;18!CL:0000624;1.59e-26;6!CL:0000898;3.98e-20;3!CL:0000815;2.91e-14;2!CL:0000792;2.91e-14;2!CL:0002677;2.91e-14;2!CL:0000625;1.32e-09;11!CL:0000542;1.59e-08;53!CL:0000895;1.35e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.76e-29,25;CL:0000827,2.76e-29,25;CL:0000791,2.03e-27,18;CL:0000789,2.03e-27,18;CL:0002420,2.03e-27,18;CL:0002419,2.03e-27,18;CL:0000790,2.03e-27,18;CL:0000624,1.55e-26,6;CL:0000898,2.14e-20,3;CL:0000815,2.16e-14,2;CL:0000792,2.16e-14,2;CL:0002677,2.16e-14,2;CL:0000838,4.73e-13,52;CL:0000542,9.08e-13,53;CL:0000051,9.08e-13,53;CL:0000625,1.35e-09,11;CL:0000810,9.72e-08,1;CL:0000895,9.72e-08,1;CL:0002436,9.72e-08,1;CL:0002427,9.72e-08,1;CL:0002428,9.72e-08,1;CL:0002429,9.72e-08,1;CL:0002433,9.72e-08,1;CL:0002431,9.72e-08,1;CL:0002432,9.72e-08,1 | |||
|ontology_enrichment_development_v019=CL:0000790;2.00e-27;18!CL:0000051;1.59e-08;53!CL:0002427;1.35e-07;1!UBERON:0005425;1.35e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.22e-14!15;UBERON:0000179!2.22e-14!15;UBERON:0000463!2.22e-14!15;UBERON:0002370!1.75e-09!4;UBERON:0005058!1.75e-09!4;UBERON:0009113!1.75e-09!4;UBERON:0003295!1.75e-09!4;UBERON:0005562!1.75e-09!4;UBERON:0004177!7.67e-08!7 | |ontology_enrichment_uberon=UBERON:0000178!2.22e-14!15;UBERON:0000179!2.22e-14!15;UBERON:0000463!2.22e-14!15;UBERON:0002370!1.75e-09!4;UBERON:0005058!1.75e-09!4;UBERON:0009113!1.75e-09!4;UBERON:0003295!1.75e-09!4;UBERON:0005562!1.75e-09!4;UBERON:0004177!7.67e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.50e-20;15!UBERON:0000179;1.50e-20;15!UBERON:0000463;1.50e-20;15!UBERON:0002390;7.26e-09;32!UBERON:0000941;1.35e-07;1!UBERON:0001785;1.35e-07;1!UBERON:0002464;1.35e-07;1!UBERON:0004904;1.35e-07;1!UBERON:0001021;1.35e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.40e-20,15;UBERON:0000179,1.40e-20,15;UBERON:0000463,1.40e-20,15;UBERON:0000941,1.44e-07,1;UBERON:0001785,1.44e-07,1;UBERON:0002464,1.44e-07,1;UBERON:0004904,1.44e-07,1;UBERON:0001021,1.44e-07,1;UBERON:0003902,1.44e-07,1;UBERON:0005425,1.44e-07,1 | |||
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| ||
|short_description=p2@TRBV7-4 | |short_description=p2@TRBV7-4 | ||
}} | }} |
Latest revision as of 19:59, 16 September 2015
Short description: | p2@TRBV7-4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRBV7-4_5end |
Coexpression cluster: | C2285_acute_CD4_thymus_CD8_Whole_Peripheral_vein |
Association with transcript: | -58bp_to_ENST00000390369_5end |
EntrezGene: | NA |
HGNC: | 12238 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.76e-29 | 25 |
pro-T cell | 2.76e-29 | 25 |
mature alpha-beta T cell | 2.03e-27 | 18 |
alpha-beta T cell | 2.03e-27 | 18 |
immature T cell | 2.03e-27 | 18 |
mature T cell | 2.03e-27 | 18 |
immature alpha-beta T cell | 2.03e-27 | 18 |
CD4-positive, alpha-beta T cell | 1.55e-26 | 6 |
naive T cell | 2.14e-20 | 3 |
regulatory T cell | 2.16e-14 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.16e-14 | 2 |
naive regulatory T cell | 2.16e-14 | 2 |
lymphoid lineage restricted progenitor cell | 4.73e-13 | 52 |
lymphocyte | 9.08e-13 | 53 |
common lymphoid progenitor | 9.08e-13 | 53 |
CD8-positive, alpha-beta T cell | 1.35e-09 | 11 |
CD4-positive, alpha-beta thymocyte | 9.72e-08 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 9.72e-08 | 1 |
mature CD4 single-positive thymocyte | 9.72e-08 | 1 |
resting double-positive thymocyte | 9.72e-08 | 1 |
double-positive blast | 9.72e-08 | 1 |
CD69-positive double-positive thymocyte | 9.72e-08 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 9.72e-08 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 9.72e-08 | 1 |
CD24-positive, CD4 single-positive thymocyte | 9.72e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
blood | 1.40e-20 | 15 |
haemolymphatic fluid | 1.40e-20 | 15 |
organism substance | 1.40e-20 | 15 |
cranial nerve II | 1.44e-07 | 1 |
cranial nerve | 1.44e-07 | 1 |
nerve trunk | 1.44e-07 | 1 |
nerve connecting eye with brain | 1.44e-07 | 1 |
nerve | 1.44e-07 | 1 |
retinal neural layer | 1.44e-07 | 1 |
presumptive neural retina | 1.44e-07 | 1 |