FFCP PHASE1:Hg19::chr2:128399812..128399825,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=100bp_to_ENST00000484252,uc002tou.2_5end | |association_with_transcript=100bp_to_ENST00000484252,uc002tou.2_5end | ||
|cluster_id=chr2:128399812..128399825,- | |||
|coexpression_cluster_id=C141 | |||
|description=CAGE_peak_31_at_LIMS2_5end | |description=CAGE_peak_31_at_LIMS2_5end | ||
|id=chr2:128399812..128399825,- | |id=chr2:128399812..128399825,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000084;7.04e-11;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,6.93e-11,25;CL:0000827,6.93e-11,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2531;4.74e-07;51!DOID:0060083;4.74e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.17e-09,51;DOID:0060083,2.17e-09,51;DOID:1240,3.24e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.31e-11!7;UBERON:0001301!7.50e-10!1;UBERON:0002370!1.15e-09!4;UBERON:0005058!1.15e-09!4;UBERON:0009113!1.15e-09!4;UBERON:0003295!1.15e-09!4;UBERON:0005562!1.15e-09!4;UBERON:0002372!1.48e-09!1;UBERON:0001961!1.48e-09!1;UBERON:0001744!1.48e-09!1;UBERON:0001735!1.48e-09!1;UBERON:0000974!2.71e-08!10;UBERON:0001042!3.07e-08!10;UBERON:0009145!3.07e-08!10;UBERON:0006562!1.57e-07!11;UBERON:0009722!1.83e-07!11;UBERON:0007690!1.83e-07!11 | |ontology_enrichment_uberon=UBERON:0004177!1.31e-11!7;UBERON:0001301!7.50e-10!1;UBERON:0002370!1.15e-09!4;UBERON:0005058!1.15e-09!4;UBERON:0009113!1.15e-09!4;UBERON:0003295!1.15e-09!4;UBERON:0005562!1.15e-09!4;UBERON:0002372!1.48e-09!1;UBERON:0001961!1.48e-09!1;UBERON:0001744!1.48e-09!1;UBERON:0001735!1.48e-09!1;UBERON:0000974!2.71e-08!10;UBERON:0001042!3.07e-08!10;UBERON:0009145!3.07e-08!10;UBERON:0006562!1.57e-07!11;UBERON:0009722!1.83e-07!11;UBERON:0007690!1.83e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.10e-57;2!UBERON:0005058;3.10e-57;2!UBERON:0009113;3.10e-57;2!UBERON:0004177;1.21e-23;5!UBERON:0005057;1.21e-23;5!UBERON:0002114;1.09e-10;2!UBERON:0002108;6.39e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.74e-29,4;UBERON:0005058,2.74e-29,4;UBERON:0009113,2.74e-29,4;UBERON:0003295,2.74e-29,4;UBERON:0005562,2.74e-29,4;UBERON:0003351,6.48e-20,6;UBERON:0004177,3.15e-17,7;UBERON:0005057,3.15e-17,7;UBERON:0000974,2.24e-12,10;UBERON:0003408,2.24e-12,10;UBERON:0001042,2.24e-12,10;UBERON:0009145,2.24e-12,10;UBERON:0006562,2.42e-11,11;UBERON:0009722,2.42e-11,11;UBERON:0007690,2.42e-11,11;UBERON:0002114,1.20e-10,2;UBERON:0008814,2.68e-07,18;UBERON:0001557,5.84e-07,19;UBERON:0002108,6.77e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0.267540828089713,0,0,0,0,0.253019692019503,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.0097453800981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,1.84968792705877,1.27541018183058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10966490978682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0.45120521581504,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,5.49005733606052,3.91070700063905,0,0.0636471582781649,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0.267540828089713,0,0,0,0,0.253019692019503,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.0097453800981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,1.84968792705877,1.27541018183058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10966490978682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0.45120521581504,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,5.49005733606052,3.91070700063905,0,0.0636471582781649,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p31@LIMS2 | |short_description=p31@LIMS2 | ||
}} | }} |
Latest revision as of 20:58, 16 September 2015
Short description: | p31@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_31_at_LIMS2_5end |
Coexpression cluster: | C141_Hodgkin_acute_thymus_chronic_vein_CD4_B |
Association with transcript: | 100bp_to_ENST00000484252, uc002tou.2_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 6.93e-11 | 25 |
pro-T cell | 6.93e-11 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.74e-29 | 4 |
hemolymphoid system gland | 2.74e-29 | 4 |
thymic region | 2.74e-29 | 4 |
pharyngeal gland | 2.74e-29 | 4 |
thymus primordium | 2.74e-29 | 4 |
pharyngeal epithelium | 6.48e-20 | 6 |
hemopoietic organ | 3.15e-17 | 7 |
immune organ | 3.15e-17 | 7 |
neck | 2.24e-12 | 10 |
gland of gut | 2.24e-12 | 10 |
chordate pharynx | 2.24e-12 | 10 |
pharyngeal region of foregut | 2.24e-12 | 10 |
pharynx | 2.42e-11 | 11 |
entire pharyngeal arch endoderm | 2.42e-11 | 11 |
early pharyngeal endoderm | 2.42e-11 | 11 |
duodenum | 1.20e-10 | 2 |
pharyngeal arch system | 2.68e-07 | 18 |
upper respiratory tract | 5.84e-07 | 19 |
small intestine | 6.77e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.17e-09 | 51 |
immune system cancer | 2.17e-09 | 51 |
leukemia | 3.24e-07 | 39 |