FFCP PHASE1:Hg19::chr2:128400745..128400763,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z4I2 | |UniProt=Q7Z4I2 | ||
|association_with_transcript=39bp_to_ENST00000409286_5end | |association_with_transcript=39bp_to_ENST00000409286_5end | ||
|cluster_id=chr2:128400745..128400763,- | |||
|coexpression_cluster_id=C88 | |coexpression_cluster_id=C88 | ||
|description=CAGE_peak_23_at_LIMS2_5end | |description=CAGE_peak_23_at_LIMS2_5end | ||
|id=chr2:128400745..128400763,- | |id=chr2:128400745..128400763,- | ||
|ontology_enrichment_celltype=CL:0000148!5.58e-34!10;CL:0000541!5.58e-34!10;CL:0000147!6.53e-24!14;CL:0002567!3.25e-17!3;CL:0000710!2.37e-16!20;CL:0000325!5.14e-12!39;CL:0000075!8.95e-12!27;CL:0002077!9.34e-12!33;CL:0002566!5.90e-07!1;CL:0000333!6.44e-07!41 | |ontology_enrichment_celltype=CL:0000148!5.58e-34!10;CL:0000541!5.58e-34!10;CL:0000147!6.53e-24!14;CL:0002567!3.25e-17!3;CL:0000710!2.37e-16!20;CL:0000325!5.14e-12!39;CL:0000075!8.95e-12!27;CL:0002077!9.34e-12!33;CL:0002566!5.90e-07!1;CL:0000333!6.44e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000148;3.69e-96;10!CL:0000147;9.69e-69;14!CL:0002567;1.49e-59;3!CL:0000710;3.75e-48;20!CL:0000075;1.11e-35;27!CL:0002077;5.74e-25;34!CL:0002566;1.88e-21;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.96e-96,10;CL:0000541,3.96e-96,10;CL:0000147,1.02e-68,14;CL:0002567,1.49e-59,3;CL:0000710,3.89e-48,20;CL:0000075,1.14e-35,27;CL:0002077,2.54e-28,34;CL:0000333,2.22e-22,41;CL:0002566,1.88e-21,1;CL:0000133,9.81e-16,59;CL:0000221,6.18e-13,72 | |||
|ontology_enrichment_development_v019=CL:0000133;1.10e-08;59!UBERON:0003056;5.93e-08;3!CL:0000221;2.59e-07;72 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p23@LIMS2 | |short_description=p23@LIMS2 | ||
}} | }} |
Latest revision as of 20:59, 16 September 2015
Short description: | p23@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_LIMS2_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 39bp_to_ENST00000409286_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | Q7Z4I2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.96e-96 | 10 |
melanoblast | 3.96e-96 | 10 |
pigment cell | 1.02e-68 | 14 |
light melanocyte | 1.49e-59 | 3 |
neurecto-epithelial cell | 3.89e-48 | 20 |
columnar/cuboidal epithelial cell | 1.14e-35 | 27 |
ecto-epithelial cell | 2.54e-28 | 34 |
migratory neural crest cell | 2.22e-22 | 41 |
dark melanocyte | 1.88e-21 | 1 |
neurectodermal cell | 9.81e-16 | 59 |
ectodermal cell | 6.18e-13 | 72 |