FFCP PHASE1:Hg19::chr2:128400788..128400798,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z4I2 | |UniProt=Q7Z4I2 | ||
|association_with_transcript=4bp_to_ENST00000409286_5end | |association_with_transcript=4bp_to_ENST00000409286_5end | ||
|cluster_id=chr2:128400788..128400798,- | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_44_at_LIMS2_5end | |description=CAGE_peak_44_at_LIMS2_5end | ||
|id=chr2:128400788..128400798,- | |id=chr2:128400788..128400798,- | ||
|ontology_enrichment_celltype=CL:0000148!3.25e-38!10;CL:0000541!3.25e-38!10;CL:0000147!4.26e-27!14;CL:0002567!8.73e-25!3;CL:0000710!9.63e-19!20;CL:0000075!1.12e-13!27;CL:0002077!4.82e-11!33;CL:0002566!1.74e-09!1;CL:0000325!3.23e-09!39;CL:0000333!2.78e-08!41 | |ontology_enrichment_celltype=CL:0000148!3.25e-38!10;CL:0000541!3.25e-38!10;CL:0000147!4.26e-27!14;CL:0002567!8.73e-25!3;CL:0000710!9.63e-19!20;CL:0000075!1.12e-13!27;CL:0002077!4.82e-11!33;CL:0002566!1.74e-09!1;CL:0000325!3.23e-09!39;CL:0000333!2.78e-08!41 | ||
|ontology_enrichment_celltype_v019=CL:0000148;1.66e-88;10!CL:0002567;2.75e-74;3!CL:0000147;2.27e-63;14!CL:0000710;1.71e-44;20!CL:0000075;4.68e-33;27!CL:0002566;3.15e-26;1!CL:0002077;2.66e-22;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.66e-88,10;CL:0000541,1.66e-88,10;CL:0002567,1.66e-74,3;CL:0000147,2.27e-63,14;CL:0000710,1.71e-44,20;CL:0000075,4.69e-33,27;CL:0002077,2.58e-26,34;CL:0002566,2.78e-26,1;CL:0000333,7.31e-21,41;CL:0000133,9.18e-15,59;CL:0000221,3.42e-12,72 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.53e-09;3!UBERON:0003056;1.53e-09;3!UBERON:0003057;1.53e-09;3!CL:0000133;3.38e-09;59!CL:0000221;6.78e-07;72 | |||
|ontology_enrichment_disease=DOID:1909!2.37e-16!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.00e-11!57;UBERON:0005068!2.00e-11!57;UBERON:0006241!2.00e-11!57;UBERON:0007135!2.00e-11!57;UBERON:0002426!3.05e-09!1;UBERON:0003831!3.05e-09!1;UBERON:0003898!3.05e-09!1;UBERON:0004830!3.05e-09!1;UBERON:0001774!3.05e-09!1;UBERON:0003830!3.05e-09!1;UBERON:0005175!3.05e-09!1;UBERON:0003897!3.05e-09!1;UBERON:0001103!3.05e-09!1;UBERON:0010084!3.05e-09!1;UBERON:0001301!3.58e-09!1;UBERON:0002616!8.19e-09!59;UBERON:0002336!8.49e-09!1;UBERON:0001018!8.49e-09!1;UBERON:0002473!8.49e-09!1;UBERON:0005340!8.49e-09!1;UBERON:0002316!8.49e-09!1;UBERON:0003544!8.49e-09!1;UBERON:0001020!8.49e-09!1;UBERON:0005970!8.49e-09!1;UBERON:0002437!8.49e-09!1;UBERON:0001882!9.91e-09!1;UBERON:0005403!9.91e-09!1;UBERON:0003075!1.07e-08!86;UBERON:0007284!1.07e-08!86;UBERON:0002022!1.16e-08!1;UBERON:0005743!1.41e-08!86;UBERON:0002346!3.10e-08!90;UBERON:0002780!5.68e-08!41;UBERON:0001890!5.68e-08!41;UBERON:0006240!5.68e-08!41;UBERON:0003080!9.07e-08!42;UBERON:0000073!1.30e-07!94;UBERON:0001016!1.30e-07!94;UBERON:0001017!2.11e-07!82;UBERON:0000955!3.03e-07!69;UBERON:0006238!3.03e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;1.53e-09;3!UBERON:0005174;1.53e-09;3!UBERON:0001137;1.53e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,1.41e-09,3;UBERON:0005174,1.41e-09,3;UBERON:0001137,1.41e-09,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.92090313743978,1.52795370223311,8.20522130470329,1.71072446022705,1.23392991243988,0,2.5724378936752,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,1.35805433935647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6906229103336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.92090313743978,1.52795370223311,8.20522130470329,1.71072446022705,1.23392991243988,0,2.5724378936752,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,1.35805433935647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6906229103336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p44@LIMS2 | |short_description=p44@LIMS2 | ||
}} | }} |
Latest revision as of 21:00, 16 September 2015
Short description: | p44@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_44_at_LIMS2_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | 4bp_to_ENST00000409286_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | Q7Z4I2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.66e-88 | 10 |
melanoblast | 1.66e-88 | 10 |
light melanocyte | 1.66e-74 | 3 |
pigment cell | 2.27e-63 | 14 |
neurecto-epithelial cell | 1.71e-44 | 20 |
columnar/cuboidal epithelial cell | 4.69e-33 | 27 |
ecto-epithelial cell | 2.58e-26 | 34 |
dark melanocyte | 2.78e-26 | 1 |
migratory neural crest cell | 7.31e-21 | 41 |
neurectodermal cell | 9.18e-15 | 59 |
ectodermal cell | 3.42e-12 | 72 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 1.41e-09 | 3 |
dorsal region element | 1.41e-09 | 3 |
dorsum | 1.41e-09 | 3 |