FFCP PHASE1:Hg19::chr2:128400821..128400830,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z4I2 | |UniProt=Q7Z4I2 | ||
|association_with_transcript=-18bp_to_ENST00000409286_5end | |association_with_transcript=-18bp_to_ENST00000409286_5end | ||
|cluster_id=chr2:128400821..128400830,- | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_39_at_LIMS2_5end | |description=CAGE_peak_39_at_LIMS2_5end | ||
|id=chr2:128400821..128400830,- | |id=chr2:128400821..128400830,- | ||
|ontology_enrichment_celltype=CL:0000148!1.29e-21!10;CL:0000541!1.29e-21!10;CL:0000147!2.84e-15!14;CL:0000710!1.66e-10!20;CL:0002567!3.54e-09!3;CL:0000075!1.28e-07!27;CL:0002566!1.75e-07!1 | |ontology_enrichment_celltype=CL:0000148!1.29e-21!10;CL:0000541!1.29e-21!10;CL:0000147!2.84e-15!14;CL:0000710!1.66e-10!20;CL:0002567!3.54e-09!3;CL:0000075!1.28e-07!27;CL:0002566!1.75e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000148;1.29e-117;10!CL:0000147;2.84e-84;14!CL:0000710;3.03e-59;20!CL:0002567;1.09e-44;3!CL:0000075;4.38e-44;27!CL:0002566;4.27e-34;1!CL:0002077;8.09e-33;34!CL:0000149;1.63e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.29e-117,10;CL:0000541,1.29e-117,10;CL:0000147,2.84e-84,14;CL:0000710,3.03e-59,20;CL:0002567,9.77e-45,3;CL:0000075,4.38e-44,27;CL:0002077,3.73e-35,34;CL:0002566,5.05e-34,1;CL:0000333,6.20e-28,41;CL:0000133,7.27e-20,59;CL:0000221,1.82e-16,72;CL:0000149,1.70e-09,4 | |||
|ontology_enrichment_development_v019=CL:0000133;8.69e-11;59!CL:0000221;4.28e-09;72 | |||
|ontology_enrichment_disease=DOID:178!3.82e-07!1;DOID:326!3.82e-07!1;DOID:3978!3.82e-07!1;DOID:3394!3.82e-07!1;DOID:5844!3.82e-07!1 | |ontology_enrichment_disease=DOID:178!3.82e-07!1;DOID:326!3.82e-07!1;DOID:3978!3.82e-07!1;DOID:3394!3.82e-07!1;DOID:5844!3.82e-07!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001737!1.95e-10!9;UBERON:0007023!2.31e-09!115;UBERON:0002084!2.37e-07!1;UBERON:0002082!2.37e-07!1;UBERON:0004706!2.37e-07!1;UBERON:0001301!2.84e-07!1;UBERON:0001874!4.85e-07!1;UBERON:0007190!5.78e-07!1 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p39@LIMS2 | |short_description=p39@LIMS2 | ||
}} | }} |
Latest revision as of 21:01, 16 September 2015
Short description: | p39@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_39_at_LIMS2_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | -18bp_to_ENST00000409286_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | Q7Z4I2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.29e-117 | 10 |
melanoblast | 1.29e-117 | 10 |
pigment cell | 2.84e-84 | 14 |
neurecto-epithelial cell | 3.03e-59 | 20 |
light melanocyte | 9.77e-45 | 3 |
columnar/cuboidal epithelial cell | 4.38e-44 | 27 |
ecto-epithelial cell | 3.73e-35 | 34 |
dark melanocyte | 5.05e-34 | 1 |
migratory neural crest cell | 6.20e-28 | 41 |
neurectodermal cell | 7.27e-20 | 59 |
ectodermal cell | 1.82e-16 | 72 |
visual pigment cell | 1.70e-09 | 4 |