FFCP PHASE1:Hg19::chr13:24825805..24825819,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221178 | |EntrezGene=221178 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23222 | |HGNC=23222 | ||
|TSSclassifier=strong | |||
|UniProt=Q96N96 | |UniProt=Q96N96 | ||
|association_with_transcript=-12bp_to_ENST00000434675,ENST00000438694,uc010tcy.1,uc010tcz.1_5end | |association_with_transcript=-12bp_to_ENST00000434675,ENST00000438694,uc010tcy.1,uc010tcz.1_5end | ||
|cluster_id=chr13:24825805..24825819,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_6_at_SPATA13_5end | |description=CAGE_peak_6_at_SPATA13_5end | ||
|id=chr13:24825805..24825819,+ | |id=chr13:24825805..24825819,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.62e-29!18;CL:0000789!1.62e-29!18;CL:0002420!1.62e-29!18;CL:0002419!1.62e-29!18;CL:0000790!1.62e-29!18;CL:0000084!6.00e-27!25;CL:0000827!6.00e-27!25;CL:0000738!1.18e-22!140;CL:0002087!2.70e-20!119;CL:0000625!2.70e-18!11;CL:0002031!1.54e-17!124;CL:0000838!3.91e-17!52;CL:0000542!1.20e-16!53;CL:0000051!1.20e-16!53;CL:0000037!2.48e-15!172;CL:0000566!2.48e-15!172;CL:0002032!4.75e-14!165;CL:0000837!4.75e-14!165;CL:0000988!1.30e-13!182;CL:0000624!1.88e-11!6;CL:0002057!2.44e-07!42 | |ontology_enrichment_celltype=CL:0000791!1.62e-29!18;CL:0000789!1.62e-29!18;CL:0002420!1.62e-29!18;CL:0002419!1.62e-29!18;CL:0000790!1.62e-29!18;CL:0000084!6.00e-27!25;CL:0000827!6.00e-27!25;CL:0000738!1.18e-22!140;CL:0002087!2.70e-20!119;CL:0000625!2.70e-18!11;CL:0002031!1.54e-17!124;CL:0000838!3.91e-17!52;CL:0000542!1.20e-16!53;CL:0000051!1.20e-16!53;CL:0000037!2.48e-15!172;CL:0000566!2.48e-15!172;CL:0002032!4.75e-14!165;CL:0000837!4.75e-14!165;CL:0000988!1.30e-13!182;CL:0000624!1.88e-11!6;CL:0002057!2.44e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.13e-47;18!CL:0000789;2.13e-47;18!CL:0002419;2.13e-47;18!CL:0000084;2.76e-44;25!CL:0000625;5.46e-29;11!CL:0000624;1.11e-17;6!CL:0000542;1.01e-13;53!CL:0000898;7.87e-10;3!CL:0000623;1.92e-09;3!CL:0000226;9.87e-09;3!CL:0000842;9.87e-09;3!CL:0000767;4.37e-08;3!CL:0000815;3.70e-07;2!CL:0000792;3.70e-07;2!CL:0002677;3.70e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.36e-47,18;CL:0000789,2.36e-47,18;CL:0002420,2.36e-47,18;CL:0002419,2.36e-47,18;CL:0000790,2.36e-47,18;CL:0000084,2.78e-44,25;CL:0000827,2.78e-44,25;CL:0000625,6.35e-29,11;CL:0000838,9.64e-25,52;CL:0000542,3.81e-24,53;CL:0000051,3.81e-24,53;CL:0000624,1.03e-17,6;CL:0002087,1.04e-16,115;CL:0000738,5.75e-16,136;CL:0002031,2.93e-12,120;CL:0000037,3.30e-11,168;CL:0000988,3.40e-10,177;CL:0000898,7.23e-10,3;CL:0002032,1.81e-09,161;CL:0000837,1.81e-09,161;CL:0000623,1.84e-09,3;CL:0000825,1.84e-09,3;CL:0000226,1.03e-08,3;CL:0000842,1.03e-08,3;CL:0000767,4.78e-08,3;CL:0000815,3.54e-07,2;CL:0000792,3.54e-07,2;CL:0002677,3.54e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;2.13e-47;18!CL:0000051;1.01e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.59e-14!15;UBERON:0000179!5.59e-14!15;UBERON:0000463!5.59e-14!15;UBERON:0002390!4.43e-13!102;UBERON:0003061!4.43e-13!102;UBERON:0002193!1.09e-12!112;UBERON:0007023!2.60e-10!115;UBERON:0004177!7.19e-08!7;UBERON:0002370!3.66e-07!4;UBERON:0005058!3.66e-07!4;UBERON:0009113!3.66e-07!4;UBERON:0003295!3.66e-07!4;UBERON:0005562!3.66e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.33e-22;15!UBERON:0000179;1.33e-22;15!UBERON:0000463;1.33e-22;15!UBERON:0002390;1.93e-11;32!UBERON:0002193;9.44e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.26e-22,15;UBERON:0000179,1.26e-22,15;UBERON:0000463,1.26e-22,15;UBERON:0002370,1.02e-10,4;UBERON:0005058,1.02e-10,4;UBERON:0009113,1.02e-10,4;UBERON:0003295,1.02e-10,4;UBERON:0005562,1.02e-10,4;UBERON:0002193,2.10e-07,108;UBERON:0003351,3.79e-07,6;UBERON:0002390,5.77e-07,98;UBERON:0003061,5.77e-07,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,5.37361157336098,1.39334510984468,0,0,0,0,0,0,1.66198622559563,2.20598892217156,2.82114131930607,0,1.94336199611388,0,0,0.377875943688809,0.485168122375632,0,0,0,0,0.256160706529101,0.236482229888585,0,0,1.35426486594342,0.188242339542605,0.545812300115692,0.224723484445085,0.306083892370903,0.320929027076094,0.639337125799041,0,0,0,0,1.13477044938228,0.622822248995575,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0.569212969109448,0.587237189370939,0,0,0.560508562981536,0,8.65522988500866,11.3973121197258,13.7753004329671,8.86088425570594,14.6665019985116,14.203434172042,19.4826728407911,8.46719472327319,12.3734481139432,9.96902525626295,13.5401931882508,12.8091319725675,10.7949258474699,8.71520894399483,8.0141505157896,7.82468331484642,10.9732056739925,18.4603171381902,14.6349733326968,8.83812873041016,11.8798353016596,11.3397057009268,12.1449452169361,8.60126618675061,9.76625180784628,12.3558765778289,9.03450714466637,10.4949021146623,3.74792179657038,6.86654030927649,4.92676798152628,7.25784275609037,9.36040685242276,10.4273570795615,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06400514659507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.70757604772815,9.45747648969251,11.6438890424139,9.88241379354062,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.16920065307218,5.1771408196468,5.87001567918944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.239293992399,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.188287601553558,0,0,0,0,5.58192370155386,3.0585488285695,2.27858874869665,5.71756261098694,4.93634727703433,3.24236655596359,3.7802200606668,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6480387422676,0,0.19924798825107,4.14425873296722,0,0,0,0,0,0,0,0.197286811273867,7.18449277040819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,3.06579894587209,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,1.22206028986725,0,0,0,0.067401132980677,0,0,0,0,0,0,3.62972148145992,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,1.06726497369676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0,0,0.315222829196793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28144895081234,0.314408610199332,0.414239055347196,4.96166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531459361253452,0.490696182767533,0,0,0,2.19986135440423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0.913158720509496,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0,0,0,0,0,0,0,1.08043821351123,0.218559560503957,0,0,0,0,0,0,0,0.375935671919414,0.773494655682926,0,0,0,0,0.730336388246517,1.37618785021362,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0.639701945702943,0,1.61472274590015,1.24149428591716,0,0.12729431655633,0.202117188958219,0.217716747896961,0,2.62673006756891,0.286888821570705,0,0,0,0,0,0,0.122241444182866,0,0,1.61019034872821,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,5.37361157336098,1.39334510984468,0,0,0,0,0,0,1.66198622559563,2.20598892217156,2.82114131930607,0,1.94336199611388,0,0,0.377875943688809,0.485168122375632,0,0,0,0,0.256160706529101,0.236482229888585,0,0,1.35426486594342,0.188242339542605,0.545812300115692,0.224723484445085,0.306083892370903,0.320929027076094,0.639337125799041,0,0,0,0,1.13477044938228,0.622822248995575,0,0.521482918420201,0.217188844705117,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0.569212969109448,0.587237189370939,0,0,0.560508562981536,0,8.65522988500866,11.3973121197258,13.7753004329671,8.86088425570594,14.6665019985116,14.203434172042,19.4826728407911,8.46719472327319,12.3734481139432,9.96902525626295,13.5401931882508,12.8091319725675,10.7949258474699,8.71520894399483,8.0141505157896,7.82468331484642,10.9732056739925,18.4603171381902,14.6349733326968,8.83812873041016,11.8798353016596,11.3397057009268,12.1449452169361,8.60126618675061,9.76625180784628,12.3558765778289,9.03450714466637,10.4949021146623,3.74792179657038,6.86654030927649,4.92676798152628,7.25784275609037,9.36040685242276,10.4273570795615,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06400514659507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.70757604772815,9.45747648969251,11.6438890424139,9.88241379354062,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.16920065307218,5.1771408196468,5.87001567918944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.239293992399,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.188287601553558,0,0,0,0,5.58192370155386,3.0585488285695,2.27858874869665,5.71756261098694,4.93634727703433,3.24236655596359,3.7802200606668,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6480387422676,0,0.19924798825107,4.14425873296722,0,0,0,0,0,0,0,0.197286811273867,7.18449277040819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,3.06579894587209,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,1.22206028986725,0,0,0,0.067401132980677,0,0,0,0,0,0,3.62972148145992,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,1.06726497369676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0,0,0.315222829196793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28144895081234,0.314408610199332,0.414239055347196,4.96166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531459361253452,0.490696182767533,0,0,0,2.19986135440423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0.913158720509496,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0,0,0,0,0,0,0,1.08043821351123,0.218559560503957,0,0,0,0,0,0,0,0.375935671919414,0.773494655682926,0,0,0,0,0.730336388246517,1.37618785021362,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0.639701945702943,0,1.61472274590015,1.24149428591716,0,0.12729431655633,0.202117188958219,0.217716747896961,0,2.62673006756891,0.286888821570705,0,0,0,0,0,0,0.122241444182866,0,0,1.61019034872821,0 | ||
|short_description=p6@SPATA13 | |short_description=p6@SPATA13 | ||
}} | }} |
Latest revision as of 21:19, 16 September 2015
Short description: | p6@SPATA13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SPATA13_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -12bp_to_ENST00000434675, ENST00000438694, uc010tcy.1, uc010tcz.1_5end |
EntrezGene: | SPATA13 |
HGNC: | 23222 |
UniProt: | Q96N96 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.36e-47 | 18 |
alpha-beta T cell | 2.36e-47 | 18 |
immature T cell | 2.36e-47 | 18 |
mature T cell | 2.36e-47 | 18 |
immature alpha-beta T cell | 2.36e-47 | 18 |
T cell | 2.78e-44 | 25 |
pro-T cell | 2.78e-44 | 25 |
CD8-positive, alpha-beta T cell | 6.35e-29 | 11 |
lymphoid lineage restricted progenitor cell | 9.64e-25 | 52 |
lymphocyte | 3.81e-24 | 53 |
common lymphoid progenitor | 3.81e-24 | 53 |
CD4-positive, alpha-beta T cell | 1.03e-17 | 6 |
nongranular leukocyte | 1.04e-16 | 115 |
leukocyte | 5.75e-16 | 136 |
hematopoietic lineage restricted progenitor cell | 2.93e-12 | 120 |
hematopoietic stem cell | 3.30e-11 | 168 |
hematopoietic cell | 3.40e-10 | 177 |
naive T cell | 7.23e-10 | 3 |
hematopoietic oligopotent progenitor cell | 1.81e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.81e-09 | 161 |
natural killer cell | 1.84e-09 | 3 |
pro-NK cell | 1.84e-09 | 3 |
single nucleate cell | 1.03e-08 | 3 |
mononuclear cell | 1.03e-08 | 3 |
basophil | 4.78e-08 | 3 |
regulatory T cell | 3.54e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.54e-07 | 2 |
naive regulatory T cell | 3.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 1.26e-22 | 15 |
haemolymphatic fluid | 1.26e-22 | 15 |
organism substance | 1.26e-22 | 15 |
thymus | 1.02e-10 | 4 |
hemolymphoid system gland | 1.02e-10 | 4 |
thymic region | 1.02e-10 | 4 |
pharyngeal gland | 1.02e-10 | 4 |
thymus primordium | 1.02e-10 | 4 |
hemolymphoid system | 2.10e-07 | 108 |
pharyngeal epithelium | 3.79e-07 | 6 |
hematopoietic system | 5.77e-07 | 98 |
blood island | 5.77e-07 | 98 |